Wall clock time and date at job start Tue Mar 31 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47231 * 2 1 4 4 C 1.50695 * 109.47255 * 120.00212 * 2 1 3 5 5 H 1.07997 * 120.00138 * 120.00244 * 4 2 1 6 6 C 1.37875 * 119.99833 * 299.99967 * 4 2 1 7 7 N 1.31519 * 120.00148 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00118 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47338 * 89.99606 * 8 6 4 10 10 H 1.48505 * 109.47002 * 209.99920 * 8 6 4 11 11 H 1.48496 * 109.46770 * 329.99576 * 8 6 4 12 12 N 1.46500 * 109.46842 * 240.00287 * 2 1 3 13 13 C 1.46498 * 119.99824 * 299.99505 * 12 2 1 14 14 S 1.65600 * 120.00217 * 120.00331 * 12 2 1 15 15 O 1.42093 * 106.40443 * 156.45634 * 14 12 2 16 16 O 1.42102 * 106.40045 * 23.53288 * 14 12 2 17 17 N 1.65604 * 107.21598 * 269.99839 * 14 12 2 18 18 C 1.46498 * 120.00133 * 64.99693 * 17 14 12 19 19 C 1.53002 * 109.46969 * 165.00322 * 18 17 14 20 20 C 1.50702 * 109.46941 * 179.97438 * 19 18 17 21 21 C 1.41385 * 128.00459 * 90.00093 * 20 19 18 22 22 N 1.30179 * 106.39389 * 179.97438 * 21 20 19 23 23 O 1.20927 * 111.60367 * 359.97438 * 22 21 20 24 24 C 1.34037 * 111.56699 * 359.97438 * 23 22 21 25 25 H 1.09005 * 109.47092 * 299.99975 * 1 2 3 26 26 H 1.08997 * 109.47357 * 59.99913 * 1 2 3 27 27 H 1.09003 * 109.47231 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99878 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.47342 * 270.00205 * 13 12 2 30 30 H 1.08995 * 109.47441 * 30.00502 * 13 12 2 31 31 H 1.09005 * 109.46882 * 150.00556 * 13 12 2 32 32 H 0.97004 * 119.99738 * 245.00206 * 17 14 12 33 33 H 1.08994 * 109.47319 * 44.99783 * 18 17 14 34 34 H 1.09005 * 109.47165 * 284.99718 * 18 17 14 35 35 H 1.08997 * 109.47643 * 60.00125 * 19 18 17 36 36 H 1.08998 * 109.46977 * 299.99512 * 19 18 17 37 37 H 1.07993 * 126.80227 * 359.70041 * 21 20 19 38 38 H 1.08002 * 126.77549 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2394 2.4826 7 7 0.9435 0.8302 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6305 -0.5441 4.4118 10 1 1.3444 -0.9490 5.1123 11 1 2.4879 -2.5654 3.7121 12 7 2.0182 -0.6906 -1.1962 13 6 1.6643 -2.0931 -1.4280 14 16 2.9703 0.1142 -2.2863 15 8 3.7117 -0.8788 -2.9815 16 8 3.5793 1.1830 -1.5749 17 7 1.9606 0.8091 -3.3998 18 6 1.0291 1.8619 -2.9875 19 6 0.4945 2.5837 -4.2261 20 6 -0.4643 3.6663 -3.8020 21 6 -0.1740 5.0164 -3.4989 22 7 -1.3073 5.5740 -3.1838 23 8 -2.2236 4.7874 -3.2476 24 6 -1.8038 3.5716 -3.6248 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 0.7089 1.1614 3.4844 29 1 2.4157 -2.7377 -0.9717 30 1 0.6904 -2.3002 -0.9847 31 1 1.6237 -2.2852 -2.5003 32 1 1.9859 0.5190 -4.3251 33 1 1.5474 2.5751 -2.3467 34 1 0.1983 1.4177 -2.4391 35 1 -0.0239 1.8705 -4.8669 36 1 1.3252 3.0279 -4.7745 37 1 0.7963 5.4900 -3.5199 38 1 -2.4132 2.6903 -3.7600 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907384120.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:10 Heat of formation + Delta-G solvation = -39.813609 kcal Electronic energy + Delta-G solvation = -23519.116841 eV Core-core repulsion = 19912.078805 eV Total energy + Delta-G solvation = -3607.038035 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -45.85282 -38.37527 -37.87519 -37.43488 -36.86224 -34.93244 -34.50843 -32.95737 -30.89093 -29.90120 -27.27192 -26.97705 -24.85334 -23.72128 -22.58579 -22.03829 -20.28159 -18.98011 -18.62563 -18.54762 -18.43387 -17.99877 -17.32284 -16.73710 -16.05211 -15.88054 -15.64626 -15.13724 -14.82236 -14.57750 -14.23400 -14.08021 -13.70313 -13.40241 -13.29770 -13.16010 -13.08410 -12.97346 -12.94477 -12.75258 -12.63920 -12.55719 -12.19226 -12.12172 -11.99683 -11.84633 -11.22316 -11.11090 -10.53228 -10.44167 -10.27444 -9.65006 -8.11123 -6.24006 -0.31039 0.65661 1.32855 1.42008 1.44598 1.53020 2.08023 2.43528 2.48678 2.67609 3.17591 3.41757 3.48286 3.82734 3.96413 4.08415 4.14829 4.26930 4.40420 4.55196 4.68150 4.72586 4.85276 4.88089 5.01056 5.05252 5.13607 5.16266 5.18319 5.22432 5.30447 5.63485 5.74470 5.90642 6.14512 6.25836 6.33988 6.83753 7.36177 7.45046 8.92513 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013789 B = 0.005020 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.068250 B = 5576.174472 C = 6923.893306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.272 3.728 3 H 0.025 0.975 4 C -0.538 4.538 5 H 0.055 0.945 6 C 0.019 3.981 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.284 1.284 10 H -0.279 1.279 11 H -0.267 1.267 12 N -0.997 5.997 13 C 0.104 3.896 14 S 2.795 3.205 15 O -1.010 7.010 16 O -1.019 7.019 17 N -1.111 6.111 18 C 0.116 3.884 19 C -0.034 4.034 20 C -0.212 4.212 21 C -0.016 4.016 22 N -0.403 5.403 23 O 0.083 5.917 24 C -0.038 4.038 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.263 0.737 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.428 0.572 33 H 0.053 0.947 34 H 0.073 0.927 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.201 0.799 38 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.649 0.541 -16.139 17.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.181 4.181 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.210 1.210 10 H -0.205 1.205 11 H -0.191 1.191 12 N -0.839 5.839 13 C -0.041 4.041 14 S 2.804 3.196 15 O -0.994 6.994 16 O -1.002 7.002 17 N -0.875 5.875 18 C -0.010 4.010 19 C -0.073 4.073 20 C -0.217 4.217 21 C -0.194 4.194 22 N -0.108 5.108 23 O 0.021 5.979 24 C -0.120 4.120 25 H 0.082 0.918 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.265 0.735 33 H 0.072 0.928 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.114 0.886 37 H 0.218 0.782 38 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -6.143 2.001 -15.428 16.726 hybrid contribution 0.664 -0.950 0.719 1.364 sum -5.479 1.051 -14.709 15.732 Atomic orbital electron populations 1.21958 0.96580 1.00349 1.00711 1.18401 0.92425 0.91230 0.81152 0.95748 1.21668 1.31503 1.12974 0.91625 0.92724 1.25595 0.95260 0.95717 1.01544 1.69969 1.37320 1.23648 1.24244 0.85656 0.77900 0.79259 0.79413 1.21042 1.20478 1.19100 1.57560 1.70045 1.21118 1.35206 1.21331 1.01582 0.80190 1.01015 1.01216 0.73500 0.72407 0.72430 1.93522 1.70424 1.60587 1.74842 1.93547 1.75335 1.57473 1.73894 1.55588 1.56750 1.51196 1.23961 1.21391 0.92488 0.88919 0.98180 1.20013 0.97274 0.94116 0.95924 1.21439 0.95437 0.95720 1.09124 1.25459 0.98997 0.93792 1.01146 1.73884 0.98071 1.18188 1.20701 1.84778 1.32048 1.17310 1.63798 1.26668 0.95864 0.90492 0.98952 0.91753 0.93763 0.93788 0.92736 0.94393 0.90304 0.89884 0.73540 0.92845 0.90914 0.86515 0.88602 0.78187 0.72693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.95 71.98 0.64 -5.07 16 2 C 0.27 12.84 2.62 44.24 0.12 12.96 16 3 H 0.02 1.33 6.91 -2.39 -0.02 1.31 16 4 C -0.54 -28.71 8.37 25.60 0.21 -28.49 16 5 H 0.05 2.92 7.65 -2.91 -0.02 2.90 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -50.71 11.32 21.45 0.24 -50.46 16 8 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 9 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 N -1.00 -38.69 3.12 -520.45 -1.62 -40.31 16 13 C 0.10 3.37 9.53 127.77 1.22 4.58 16 14 S 2.80 101.90 6.09 -56.49 -0.34 101.55 16 15 O -1.01 -38.77 17.21 -128.00 -2.20 -40.97 16 16 O -1.02 -46.94 16.17 -128.00 -2.07 -49.01 16 17 N -1.11 -26.62 6.05 -187.49 -1.14 -27.75 16 18 C 0.12 2.69 6.23 86.38 0.54 3.23 16 19 C -0.03 -0.50 5.94 29.85 0.18 -0.32 16 20 C -0.21 -3.80 5.58 -19.73 -0.11 -3.91 16 21 C -0.02 -0.34 12.16 85.71 1.04 0.70 16 22 N -0.40 -10.48 12.07 -59.25 -0.72 -11.19 16 23 O 0.08 1.86 11.20 71.65 0.80 2.66 16 24 C -0.04 -0.60 12.26 67.17 0.82 0.23 16 25 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 26 H 0.04 1.51 6.18 -2.39 -0.01 1.49 16 27 H 0.04 1.72 6.66 -2.39 -0.02 1.70 16 28 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.08 2.42 6.43 -2.39 -0.02 2.40 16 31 H 0.08 2.09 7.79 -2.38 -0.02 2.07 16 32 H 0.43 7.06 8.65 -96.74 -0.84 6.22 16 33 H 0.05 1.56 7.75 -2.39 -0.02 1.54 16 34 H 0.07 1.70 6.18 -2.38 -0.01 1.68 16 35 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.20 3.65 8.06 -2.91 -0.02 3.62 16 38 H 0.26 1.50 8.06 -2.91 -0.02 1.47 16 Total: -1.00 -73.98 330.17 0.35 -73.64 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 0.26 Total: 11.37 kcal Atomic # 6 Polarization: -19.75 SS G_CDS: 5.11 Total: -14.64 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -3.23 Total: -129.72 kcal Atomic # 8 Polarization: -83.85 SS G_CDS: -3.47 Total: -87.32 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: 101.90 SS G_CDS: -0.34 Total: 101.55 kcal Total: -73.98 0.35 -73.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907384120.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.822 kcal (2) G-P(sol) polarization free energy of solvation -73.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds