Wall clock time and date at job start Tue Mar 31 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46507 * 109.46879 * 2 1 4 4 C 1.46492 * 120.00174 * 274.00697 * 3 2 1 5 5 C 1.50704 * 109.47106 * 280.84118 * 4 3 2 6 6 H 1.07996 * 119.99856 * 3.39942 * 5 4 3 7 7 C 1.37872 * 120.00005 * 183.40032 * 5 4 3 8 8 N 1.31519 * 119.99952 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00370 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.46882 * 89.99672 * 9 7 5 11 11 H 1.48497 * 109.47215 * 210.00368 * 9 7 5 12 12 H 1.48498 * 109.46651 * 330.00272 * 9 7 5 13 13 S 1.65595 * 119.99645 * 94.00659 * 3 2 1 14 14 O 1.42105 * 106.40513 * 336.30777 * 13 3 2 15 15 O 1.42106 * 106.40156 * 203.39229 * 13 3 2 16 16 N 1.65598 * 107.21961 * 89.84945 * 13 3 2 17 17 C 1.46494 * 119.99791 * 65.48112 * 16 13 3 18 18 C 1.53007 * 109.47208 * 164.41031 * 17 16 13 19 19 C 1.50700 * 109.47311 * 179.97438 * 18 17 16 20 20 C 1.41383 * 128.00582 * 89.99775 * 19 18 17 21 21 N 1.30170 * 106.39328 * 179.97438 * 20 19 18 22 22 O 1.20925 * 111.60750 * 0.02562 * 21 20 19 23 23 C 1.34040 * 111.56265 * 359.75874 * 22 21 20 24 24 H 1.09005 * 109.47338 * 305.05001 * 1 2 3 25 25 H 1.09000 * 109.47432 * 65.04798 * 1 2 3 26 26 H 1.08999 * 109.47140 * 185.05324 * 1 2 3 27 27 H 1.08994 * 109.46850 * 240.00569 * 2 1 3 28 28 H 1.08998 * 109.47098 * 119.99998 * 2 1 3 29 29 H 1.09000 * 109.47371 * 40.83709 * 4 3 2 30 30 H 1.08998 * 109.47627 * 160.84055 * 4 3 2 31 31 H 0.96998 * 119.99779 * 180.02562 * 8 7 5 32 32 H 0.96999 * 120.00164 * 245.48238 * 16 13 3 33 33 H 1.09000 * 109.47540 * 284.41136 * 17 16 13 34 34 H 1.09005 * 109.47296 * 44.41380 * 17 16 13 35 35 H 1.09004 * 109.46731 * 299.99995 * 18 17 16 36 36 H 1.08996 * 109.47209 * 59.99770 * 18 17 16 37 37 H 1.08000 * 126.80070 * 359.97438 * 20 19 18 38 38 H 1.08008 * 126.77219 * 180.28643 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1789 2.1015 -1.2655 5 6 3.4605 1.6694 -1.9303 6 1 4.0645 0.8927 -1.4851 7 6 3.8618 2.2656 -3.1069 8 7 4.9800 1.8881 -3.6873 9 14 2.8167 3.6085 -3.8775 10 1 3.2432 4.9303 -3.3521 11 1 2.9872 3.5834 -5.3524 12 1 1.3888 3.3791 -3.5403 13 16 2.3887 2.1284 1.4306 14 8 1.6441 1.4578 2.4382 15 8 2.2894 3.5257 1.1911 16 7 3.9850 1.8203 1.7457 17 6 5.0230 2.3599 0.8640 18 6 6.3813 2.2738 1.5631 19 6 7.4493 2.8283 0.6558 20 6 7.9075 4.1627 0.5648 21 7 8.8338 4.1714 -0.3497 22 8 9.0058 3.0707 -0.8199 23 6 8.1956 2.1628 -0.2577 24 1 -0.3634 0.5902 0.8413 25 1 -0.3634 0.4335 -0.9317 26 1 -0.3633 -1.0237 0.0905 27 1 1.8933 -0.5137 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.3366 1.8778 -1.9203 30 1 2.2136 3.1735 -1.0717 31 1 5.2625 2.3078 -4.5149 32 1 4.2327 1.2825 2.5140 33 1 5.0523 1.7814 -0.0593 34 1 4.7985 3.4013 0.6333 35 1 6.3520 2.8524 2.4864 36 1 6.6058 1.2325 1.7938 37 1 7.5583 5.0074 1.1401 38 1 8.1468 1.1088 -0.4885 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907385116.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:26 Heat of formation + Delta-G solvation = -18.624504 kcal Electronic energy + Delta-G solvation = -23824.295982 eV Core-core repulsion = 20218.176776 eV Total energy + Delta-G solvation = -3606.119207 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.65879 -36.83081 -36.31786 -36.06377 -35.32637 -33.70408 -32.69257 -31.76140 -30.26280 -28.72009 -27.18100 -23.55979 -22.96886 -22.55412 -21.60298 -20.88076 -18.87090 -17.68622 -17.26774 -17.24237 -16.93175 -16.79436 -15.86685 -15.11721 -14.76030 -14.47006 -14.26271 -13.88345 -13.45791 -13.04475 -12.94144 -12.70116 -12.52028 -12.13142 -12.06333 -11.89557 -11.75211 -11.54794 -11.47462 -11.33711 -11.17038 -11.01379 -10.89630 -10.55428 -10.40085 -10.19929 -10.04158 -9.68979 -9.16124 -8.94794 -8.69547 -8.17029 -6.22747 -4.22657 1.18237 1.78541 2.48313 3.23055 3.30527 3.34717 3.42237 3.55733 4.05716 4.30865 4.52072 4.87967 4.92352 5.06902 5.11704 5.30219 5.34940 5.38696 5.65658 5.69056 5.70413 5.74935 5.89845 5.95164 6.05771 6.22962 6.26446 6.36246 6.51102 6.57875 6.63651 6.83436 7.07006 7.22260 7.43638 7.52979 8.34168 8.48027 8.77961 9.38954 10.88586 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011999 B = 0.006785 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2332.972648 B = 4125.830838 C = 5659.786935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.131 3.869 3 N -0.986 5.986 4 C 0.212 3.788 5 C -0.542 4.542 6 H 0.083 0.917 7 C 0.080 3.920 8 N -0.888 5.888 9 Si 0.865 3.135 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.788 3.212 14 O -0.998 6.998 15 O -0.984 6.984 16 N -1.129 6.129 17 C 0.115 3.885 18 C -0.044 4.044 19 C -0.200 4.200 20 C -0.006 4.006 21 N -0.371 5.371 22 O 0.095 5.905 23 C -0.037 4.037 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.266 0.734 32 H 0.407 0.593 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.187 0.813 38 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.714 -3.242 9.220 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.827 5.827 4 C 0.089 3.911 5 C -0.581 4.581 6 H 0.101 0.899 7 C -0.124 4.124 8 N -0.526 5.526 9 Si 0.691 3.309 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.795 3.205 14 O -0.982 6.982 15 O -0.968 6.968 16 N -0.888 5.888 17 C -0.010 4.010 18 C -0.084 4.084 19 C -0.204 4.204 20 C -0.185 4.185 21 N -0.075 5.075 22 O 0.031 5.969 23 C -0.119 4.119 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.239 0.761 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.204 0.796 38 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 1.980 -1.601 8.877 9.235 hybrid contribution -0.727 -0.168 -0.102 0.753 sum 1.253 -1.769 8.774 9.038 Atomic orbital electron populations 1.22214 0.96981 1.01535 1.02206 1.20995 0.93473 0.82474 1.02604 1.57503 1.78998 1.23202 1.23007 1.19585 0.98179 0.92284 0.81077 1.21371 1.05928 1.22685 1.08069 0.89882 1.24809 0.94699 0.96360 0.96549 1.69856 1.21712 1.42145 1.18867 0.87015 0.81765 0.83206 0.78877 1.19776 1.21040 1.18831 1.01645 0.72649 0.73603 0.72570 1.93557 1.69722 1.76493 1.58399 1.93564 1.86138 1.31395 1.85662 1.55915 1.25494 1.68515 1.38908 1.21536 0.85123 1.00728 0.93638 1.20022 0.90912 1.01128 0.96295 1.21170 1.02520 0.93498 1.03254 1.24938 0.96242 0.98497 0.98779 1.73827 1.19496 1.02191 1.12019 1.84791 1.49484 1.12534 1.50079 1.25841 0.93206 0.97896 0.94912 0.92632 0.92333 0.92174 0.89733 0.91671 0.94808 0.93902 0.92440 0.76116 0.88018 0.90590 0.90444 0.90216 0.79635 0.76742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.13 2.11 6.01 -4.04 -0.02 2.09 16 3 N -0.99 -18.64 2.84 -115.67 -0.33 -18.97 16 4 C 0.21 4.69 4.54 -5.20 -0.02 4.67 16 5 C -0.54 -13.22 8.50 -34.44 -0.29 -13.51 16 6 H 0.08 2.11 6.97 -52.49 -0.37 1.74 16 7 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -24.40 13.96 55.43 0.77 -23.63 16 9 Si 0.86 20.33 27.40 -169.99 -4.66 15.67 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.26 -5.96 6.64 56.52 0.38 -5.59 16 13 S 2.79 51.09 6.10 -107.50 -0.66 50.43 16 14 O -1.00 -18.88 17.08 -57.17 -0.98 -19.86 16 15 O -0.98 -21.26 16.10 -57.17 -0.92 -22.18 16 16 N -1.13 -16.78 6.05 -10.61 -0.06 -16.85 16 17 C 0.12 1.84 6.14 -4.04 -0.02 1.81 16 18 C -0.04 -0.54 5.94 -27.88 -0.17 -0.71 16 19 C -0.20 -2.78 5.58 -104.42 -0.58 -3.36 16 20 C -0.01 -0.08 12.16 -17.06 -0.21 -0.29 16 21 N -0.37 -6.14 12.07 30.35 0.37 -5.77 16 22 O 0.10 1.51 11.20 17.18 0.19 1.70 16 23 C -0.04 -0.51 12.26 29.73 0.36 -0.14 16 24 H 0.05 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 28 H 0.06 0.93 7.65 -51.93 -0.40 0.54 16 29 H 0.03 0.74 7.43 -51.93 -0.39 0.36 16 30 H 0.04 1.00 6.07 -51.93 -0.32 0.69 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.41 4.73 8.66 -34.47 -0.30 4.43 16 33 H 0.10 1.89 5.58 -51.93 -0.29 1.60 16 34 H 0.08 1.36 7.73 -51.93 -0.40 0.96 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.19 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.22 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 333.73 15.07 5.03 5.03 Total: -1.00 -31.48 333.73 -6.91 -38.39 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: -4.99 Total: 5.61 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -0.67 Total: -9.57 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: 0.75 Total: -65.22 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -1.70 Total: -40.34 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.66 Total: 15.67 kcal Atomic # 16 Polarization: 51.09 SS G_CDS: -0.66 Total: 50.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.48 -6.91 -38.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907385116.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.765 kcal (2) G-P(sol) polarization free energy of solvation -31.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds