Wall clock time and date at job start Tue Mar 31 2020 04:16:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47164 * 2 1 4 4 C 1.46494 * 120.00326 * 275.00157 * 3 2 1 5 5 C 1.50694 * 109.47379 * 280.07221 * 4 3 2 6 6 H 1.08010 * 119.99935 * 4.25085 * 5 4 3 7 7 C 1.37877 * 120.00489 * 184.25308 * 5 4 3 8 8 N 1.31512 * 119.99700 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00144 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47413 * 59.99754 * 9 7 5 11 11 H 1.48504 * 109.47079 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47464 * 299.99739 * 9 7 5 13 13 S 1.65608 * 119.99932 * 94.99835 * 3 2 1 14 14 O 1.42107 * 106.40025 * 330.08335 * 13 3 2 15 15 O 1.42100 * 106.40288 * 197.16364 * 13 3 2 16 16 N 1.65603 * 107.21377 * 83.62222 * 13 3 2 17 17 C 1.46495 * 119.99891 * 65.19181 * 16 13 3 18 18 C 1.50700 * 109.47115 * 165.48274 * 17 16 13 19 19 O 1.34756 * 126.44366 * 269.97138 * 18 17 16 20 20 C 1.33963 * 107.75682 * 180.02562 * 19 18 17 21 21 N 1.30249 * 108.76167 * 359.97438 * 20 19 18 22 22 C 1.34333 * 126.44777 * 89.99726 * 18 17 16 23 23 C 1.50699 * 126.16172 * 359.97438 * 22 18 17 24 24 H 1.09000 * 109.47371 * 299.99598 * 1 2 3 25 25 H 1.09001 * 109.47175 * 59.99849 * 1 2 3 26 26 H 1.09001 * 109.47526 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47371 * 240.00402 * 2 1 3 28 28 H 1.09001 * 109.47175 * 120.00150 * 2 1 3 29 29 H 1.09005 * 109.46879 * 40.07209 * 4 3 2 30 30 H 1.09003 * 109.47392 * 160.07045 * 4 3 2 31 31 H 0.97002 * 119.99864 * 180.02562 * 8 7 5 32 32 H 0.97001 * 119.99567 * 245.18504 * 16 13 3 33 33 H 1.08998 * 109.47629 * 45.47970 * 17 16 13 34 34 H 1.08999 * 109.46772 * 285.47623 * 17 16 13 35 35 H 1.08005 * 125.61540 * 180.02562 * 20 19 18 36 36 H 1.09002 * 109.47284 * 270.02553 * 23 22 18 37 37 H 1.08998 * 109.46970 * 30.03126 * 23 22 18 38 38 H 1.09003 * 109.46784 * 150.02510 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1087 -1.2638 5 6 3.4380 1.6944 -1.9429 6 1 4.0484 0.9132 -1.5143 7 6 3.8299 2.3126 -3.1114 8 7 3.0865 3.2635 -3.6335 9 14 5.4160 1.7985 -3.9535 10 1 5.3403 0.3605 -4.3164 11 1 5.6092 2.6092 -5.1827 12 1 6.5594 2.0167 -3.0314 13 16 2.4121 2.1202 1.4288 14 8 1.5764 1.5431 2.4227 15 8 2.4522 3.5152 1.1613 16 7 3.9616 1.6709 1.8021 17 6 5.0723 2.0873 0.9425 18 6 6.3764 1.8695 1.6657 19 8 7.0100 2.7563 2.4583 20 6 8.1317 2.1762 2.9052 21 7 8.2041 0.9714 2.4155 22 6 7.1261 0.7551 1.6413 23 6 6.8148 -0.5096 0.8833 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.3121 1.8782 -1.9113 30 1 2.1825 3.1803 -1.0655 31 1 3.3620 3.6982 -4.4558 32 1 4.1338 1.1320 2.5901 33 1 4.9653 3.1438 0.6966 34 1 5.0627 1.4980 0.0255 35 1 8.8562 2.6321 3.5638 36 1 6.2276 -1.1765 1.5147 37 1 6.2465 -0.2648 -0.0140 38 1 7.7452 -1.0023 0.6009 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907597935.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:00 Heat of formation + Delta-G solvation = -58.595072 kcal Electronic energy + Delta-G solvation = -24022.602767 eV Core-core repulsion = 20414.750306 eV Total energy + Delta-G solvation = -3607.852461 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.31997 -36.74604 -36.12687 -35.50068 -35.27428 -34.99116 -32.78351 -31.35895 -29.97592 -28.00527 -26.70578 -25.26024 -23.22106 -22.20233 -21.75308 -20.81906 -18.99300 -17.53966 -17.12188 -16.80930 -16.59513 -16.47514 -15.69948 -15.25751 -14.86047 -14.53715 -13.93554 -13.58496 -13.37801 -13.27607 -13.19033 -12.94380 -12.57498 -12.11688 -12.08406 -12.02093 -11.73528 -11.65615 -11.48783 -11.35341 -11.10571 -11.02066 -10.99065 -10.58105 -10.52580 -10.41522 -10.10314 -9.89595 -9.26006 -8.73785 -8.56956 -8.12744 -6.18685 -4.26728 1.06959 1.54194 2.64836 2.78582 3.20178 3.26217 3.27932 3.50591 4.08623 4.13086 4.28427 4.73314 4.88372 5.04555 5.14883 5.31220 5.36765 5.44951 5.63940 5.69532 5.76473 5.83440 5.86405 5.98194 6.08040 6.11744 6.16898 6.30094 6.38149 6.63462 6.67087 7.12727 7.31214 7.36686 7.61180 7.70053 7.77483 8.07395 8.77060 9.39580 10.88985 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.010610 B = 0.007613 C = 0.005316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.495213 B = 3676.933996 C = 5265.654406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.546 4.546 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.785 3.215 14 O -0.995 6.995 15 O -0.975 6.975 16 N -1.129 6.129 17 C 0.205 3.795 18 C -0.046 4.046 19 O -0.198 6.198 20 C 0.167 3.833 21 N -0.489 5.489 22 C 0.000 4.000 23 C -0.076 4.076 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.266 0.734 32 H 0.409 0.591 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.248 0.752 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 -5.712 9.182 11.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.585 4.585 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.793 3.207 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.887 5.887 17 C 0.079 3.921 18 C -0.100 4.100 19 O -0.083 6.083 20 C -0.060 4.060 21 N -0.218 5.218 22 C -0.121 4.121 23 C -0.133 4.133 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.054 0.946 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.117 0.883 34 H 0.138 0.862 35 H 0.264 0.736 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.753 -5.220 9.467 11.809 hybrid contribution 0.959 -0.165 -0.497 1.092 sum 5.711 -5.384 8.970 11.919 Atomic orbital electron populations 1.22209 0.96891 1.01380 1.02527 1.20972 0.93742 0.82722 1.02079 1.57736 1.78376 1.23102 1.24024 1.19246 0.97303 0.92627 0.78844 1.21463 1.07428 1.20837 1.08747 0.91882 1.24945 0.97027 0.94671 0.96988 1.69914 1.37874 1.23885 1.20488 0.86725 0.83683 0.78766 0.79318 1.20035 1.21130 1.19907 1.01821 0.72415 0.73748 0.72750 1.93564 1.64933 1.79775 1.59627 1.93589 1.86320 1.30784 1.85146 1.56174 1.24582 1.70304 1.37669 1.19794 0.77461 1.03798 0.91021 1.23379 0.98528 0.89316 0.98802 1.84475 1.31581 1.42436 1.49850 1.27989 0.88621 0.89059 1.00310 1.70356 1.23321 1.16323 1.11824 1.21591 0.91916 0.97748 1.00799 1.20208 1.02554 0.91660 0.98912 0.92477 0.92057 0.92418 0.90004 0.92133 0.94589 0.92521 0.92392 0.75882 0.88270 0.86205 0.73603 0.90584 0.89830 0.90712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.15 0.38 -2.19 16 2 C 0.13 2.10 6.02 -4.05 -0.02 2.08 16 3 N -0.99 -18.87 2.84 -115.67 -0.33 -19.20 16 4 C 0.24 5.58 5.46 -5.20 -0.03 5.56 16 5 C -0.55 -13.00 8.51 -34.44 -0.29 -13.29 16 6 H 0.06 1.39 6.46 -52.48 -0.34 1.05 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.88 -24.13 13.29 55.43 0.74 -23.39 16 9 Si 0.89 19.45 29.54 -169.99 -5.02 14.43 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 13 S 2.78 52.39 6.07 -107.50 -0.65 51.74 16 14 O -0.99 -19.45 17.17 -57.17 -0.98 -20.43 16 15 O -0.97 -21.92 16.01 -57.17 -0.92 -22.84 16 16 N -1.13 -17.64 6.05 -11.66 -0.07 -17.71 16 17 C 0.21 3.37 6.54 -5.20 -0.03 3.33 16 18 C -0.05 -0.70 6.78 -35.69 -0.24 -0.95 16 19 O -0.20 -2.87 10.78 5.36 0.06 -2.81 16 20 C 0.17 1.97 13.23 52.09 0.69 2.66 16 21 N -0.49 -6.96 11.29 -11.18 -0.13 -7.09 16 22 C 0.00 0.00 7.11 -82.81 -0.59 -0.59 16 23 C -0.08 -0.94 10.22 36.01 0.37 -0.57 16 24 H 0.06 0.90 7.96 -51.93 -0.41 0.49 16 25 H 0.06 0.96 8.10 -51.93 -0.42 0.54 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.08 1.30 8.09 -51.93 -0.42 0.88 16 28 H 0.06 0.85 7.78 -51.93 -0.40 0.44 16 29 H 0.04 0.87 8.10 -51.93 -0.42 0.45 16 30 H 0.06 1.47 6.77 -51.93 -0.35 1.12 16 31 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 32 H 0.41 5.44 8.64 -34.47 -0.30 5.14 16 33 H 0.10 1.78 7.76 -51.93 -0.40 1.37 16 34 H 0.12 2.02 4.88 -51.93 -0.25 1.76 16 35 H 0.25 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.04 7.17 -51.93 -0.37 0.67 16 38 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 336.43 15.07 5.07 5.07 Total: -1.00 -31.73 336.43 -7.02 -38.76 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.92 Total: 5.79 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: 0.13 Total: -2.33 kcal Atomic # 7 Polarization: -67.60 SS G_CDS: 0.21 Total: -67.39 kcal Atomic # 8 Polarization: -44.23 SS G_CDS: -1.84 Total: -46.07 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.02 Total: 14.43 kcal Atomic # 16 Polarization: 52.39 SS G_CDS: -0.65 Total: 51.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.73 -7.02 -38.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907597935.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.838 kcal (2) G-P(sol) polarization free energy of solvation -31.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds