Wall clock time and date at job start Tue Mar 31 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34480 * 126.16453 * 2 1 4 4 C 1.30261 * 108.69762 * 180.26740 * 3 2 1 5 5 O 1.33962 * 108.75991 * 359.75439 * 4 3 2 6 6 C 1.34326 * 126.16618 * 179.84784 * 2 1 3 7 7 C 1.50707 * 126.44552 * 0.02562 * 6 2 1 8 8 N 1.46495 * 109.46902 * 89.70760 * 7 6 2 9 9 S 1.65600 * 119.99682 * 165.00012 * 8 7 6 10 10 O 1.42097 * 106.40725 * 311.46271 * 9 8 7 11 11 O 1.42103 * 106.40204 * 178.53998 * 9 8 7 12 12 N 1.65601 * 107.21835 * 65.00274 * 9 8 7 13 13 C 1.46504 * 120.00270 * 270.00236 * 12 9 8 14 14 C 1.46505 * 120.00088 * 89.99520 * 12 9 8 15 15 H 1.08999 * 109.46972 * 0.02562 * 14 12 9 16 16 C 1.53001 * 109.46854 * 120.00207 * 14 12 9 17 17 C 1.50699 * 109.47201 * 240.00028 * 14 12 9 18 18 H 1.07994 * 120.00252 * 325.04522 * 17 14 12 19 19 C 1.37875 * 119.99711 * 145.04007 * 17 14 12 20 20 N 1.31513 * 120.00199 * 176.48703 * 19 17 14 21 21 Si 1.86798 * 120.00119 * 356.49367 * 19 17 14 22 22 H 1.48496 * 109.47253 * 274.92100 * 21 19 17 23 23 H 1.48503 * 109.47261 * 34.92155 * 21 19 17 24 24 H 1.48502 * 109.47252 * 154.91488 * 21 19 17 25 25 H 1.08998 * 109.47509 * 270.14545 * 1 2 3 26 26 H 1.08997 * 109.47130 * 30.15241 * 1 2 3 27 27 H 1.09006 * 109.47108 * 150.14977 * 1 2 3 28 28 H 1.07997 * 125.61512 * 179.77460 * 4 3 2 29 29 H 1.08996 * 109.46692 * 329.71165 * 7 6 2 30 30 H 1.09000 * 109.47039 * 209.71362 * 7 6 2 31 31 H 0.97001 * 120.00401 * 345.00830 * 8 7 6 32 32 H 1.08996 * 109.46853 * 270.00330 * 13 12 9 33 33 H 1.09003 * 109.46694 * 29.99315 * 13 12 9 34 34 H 1.08988 * 109.47711 * 149.99716 * 13 12 9 35 35 H 1.08998 * 109.47291 * 185.54783 * 16 14 12 36 36 H 1.09001 * 109.47598 * 305.54980 * 16 14 12 37 37 H 1.09007 * 109.47055 * 65.55054 * 16 14 12 38 38 H 0.97004 * 120.00444 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3006 1.0857 0.0000 4 6 3.5431 0.6947 -0.0058 5 8 3.5734 -0.6446 -0.0041 6 6 2.2997 -1.0844 0.0029 7 6 1.8493 -2.5226 0.0062 8 7 1.6972 -2.9898 -1.3740 9 16 1.5772 -4.6107 -1.6909 10 8 2.6342 -5.2384 -0.9782 11 8 1.4071 -4.7333 -3.0964 12 7 0.1684 -5.1420 -1.0014 13 6 0.1680 -5.6333 0.3788 14 6 -1.0777 -5.1206 -1.7716 15 1 -0.8818 -4.7264 -2.7687 16 6 -1.6313 -6.5424 -1.8855 17 6 -2.0850 -4.2439 -1.0731 18 1 -2.1132 -4.2077 0.0058 19 6 -2.9704 -3.4879 -1.8117 20 7 -3.8942 -2.7764 -1.2035 21 14 -2.8581 -3.4745 -3.6762 22 1 -1.8598 -2.4621 -4.1047 23 1 -2.4401 -4.8161 -4.1567 24 1 -4.1851 -3.1348 -4.2497 25 1 -0.3634 0.0026 1.0276 26 1 -0.3633 0.8886 -0.5162 27 1 -0.3633 -0.8914 -0.5115 28 1 4.4065 1.3434 -0.0107 29 1 0.8937 -2.6028 0.5243 30 1 2.5923 -3.1348 0.5173 31 1 1.6668 -2.3497 -2.1022 32 1 0.3610 -6.7061 0.3826 33 1 0.9457 -5.1224 0.9465 34 1 -0.8026 -5.4371 0.8341 35 1 -2.5030 -6.5416 -2.5398 36 1 -0.8660 -7.1982 -2.3007 37 1 -1.9192 -6.9005 -0.8970 38 1 -4.5174 -2.2448 -1.7231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907598196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:11 Heat of formation + Delta-G solvation = -51.431064 kcal Electronic energy + Delta-G solvation = -24097.452552 eV Core-core repulsion = 20489.910746 eV Total energy + Delta-G solvation = -3607.541806 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37476 -36.88390 -36.39825 -35.61131 -35.41707 -35.05001 -32.56387 -31.34532 -30.00295 -28.00053 -25.77803 -25.33833 -25.23044 -22.26096 -20.91834 -20.72790 -19.00769 -17.68916 -17.48688 -16.99573 -16.65669 -16.53258 -15.92404 -15.23359 -14.98256 -14.36693 -13.85285 -13.65958 -13.38246 -13.25582 -13.08565 -12.71659 -12.58570 -12.56872 -12.07506 -11.96256 -11.83207 -11.72739 -11.68012 -11.52197 -11.24576 -10.99172 -10.87166 -10.74640 -10.55742 -10.42394 -9.88714 -9.56116 -9.34419 -8.77570 -8.72667 -8.14539 -6.27922 -4.29116 0.95452 1.45779 2.62617 2.69181 3.18124 3.28259 3.35416 3.39317 3.98003 4.10027 4.25892 4.62453 4.82525 4.89622 5.04443 5.13095 5.29338 5.49215 5.66130 5.81149 5.86420 5.91031 6.01904 6.04993 6.09655 6.15372 6.31742 6.40399 6.47365 6.51184 6.63150 6.88386 7.06696 7.15690 7.38779 7.59543 7.66753 8.32519 8.75959 9.33638 10.83213 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013852 B = 0.006715 C = 0.005271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.950885 B = 4168.751311 C = 5310.461906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.015 3.985 3 N -0.488 5.488 4 C 0.170 3.830 5 O -0.200 6.200 6 C -0.060 4.060 7 C 0.212 3.788 8 N -1.126 6.126 9 S 2.777 3.223 10 O -0.993 6.993 11 O -0.982 6.982 12 N -0.985 5.985 13 C 0.102 3.898 14 C 0.233 3.767 15 H 0.056 0.944 16 C -0.143 4.143 17 C -0.520 4.520 18 H 0.084 0.916 19 C 0.081 3.919 20 N -0.885 5.885 21 Si 0.857 3.143 22 H -0.271 1.271 23 H -0.259 1.259 24 H -0.284 1.284 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.249 0.751 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.415 0.585 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.053 0.947 38 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 2.761 3.601 11.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 N -0.218 5.218 4 C -0.057 4.057 5 O -0.086 6.086 6 C -0.114 4.114 7 C 0.086 3.914 8 N -0.884 5.884 9 S 2.787 3.213 10 O -0.976 6.976 11 O -0.966 6.966 12 N -0.827 5.827 13 C -0.044 4.044 14 C 0.129 3.871 15 H 0.074 0.926 16 C -0.204 4.204 17 C -0.559 4.559 18 H 0.102 0.898 19 C -0.123 4.123 20 N -0.522 5.522 21 Si 0.683 3.317 22 H -0.196 1.196 23 H -0.184 1.184 24 H -0.210 1.210 25 H 0.097 0.903 26 H 0.093 0.907 27 H 0.110 0.890 28 H 0.265 0.735 29 H 0.124 0.876 30 H 0.111 0.889 31 H 0.249 0.751 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.893 2.796 3.253 11.707 hybrid contribution 0.002 0.251 -1.107 1.135 sum 10.895 3.047 2.146 11.514 Atomic orbital electron populations 1.20284 0.85359 1.04644 1.03527 1.21770 0.98433 0.87189 1.03154 1.70415 1.01365 1.31887 1.18090 1.28029 0.97642 0.79464 1.00541 1.84438 1.30182 1.24470 1.69506 1.23091 0.80772 0.97580 1.09978 1.19499 1.01779 0.86135 0.84017 1.56153 1.91185 1.27946 1.13147 1.02071 0.73419 0.72643 0.73214 1.93553 1.54716 1.74359 1.75015 1.93589 1.86793 1.85525 1.30678 1.57927 1.24970 1.76931 1.22890 1.21270 1.03014 0.98089 0.82022 1.19117 0.81632 0.94662 0.91651 0.92600 1.22169 0.99553 0.97529 1.01101 1.21163 1.14712 1.24464 0.95603 0.89808 1.24938 0.94884 0.94501 0.98002 1.69869 1.17583 1.28771 1.35976 0.87170 0.77903 0.79971 0.86641 1.19593 1.18378 1.21011 0.90316 0.90651 0.88962 0.73548 0.87577 0.88927 0.75148 0.93640 0.92944 0.89835 0.92692 0.95354 0.92795 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.05 36.01 0.36 -0.80 16 2 C 0.02 0.23 7.11 -82.81 -0.59 -0.36 16 3 N -0.49 -6.92 11.29 -11.18 -0.13 -7.05 16 4 C 0.17 1.88 13.23 52.10 0.69 2.57 16 5 O -0.20 -2.63 10.77 5.38 0.06 -2.57 16 6 C -0.06 -0.85 6.78 -35.69 -0.24 -1.09 16 7 C 0.21 2.93 6.40 -5.19 -0.03 2.90 16 8 N -1.13 -17.67 6.05 -11.66 -0.07 -17.74 16 9 S 2.78 51.07 6.09 -107.50 -0.66 50.42 16 10 O -0.99 -19.07 16.68 -57.17 -0.95 -20.02 16 11 O -0.98 -21.03 16.70 -57.17 -0.95 -21.99 16 12 N -0.98 -18.40 3.12 -115.85 -0.36 -18.76 16 13 C 0.10 1.60 9.45 59.85 0.57 2.17 16 14 C 0.23 5.04 2.26 -69.08 -0.16 4.88 16 15 H 0.06 1.30 4.12 -51.93 -0.21 1.09 16 16 C -0.14 -2.86 9.09 37.16 0.34 -2.52 16 17 C -0.52 -12.53 8.72 -34.44 -0.30 -12.83 16 18 H 0.08 2.13 6.82 -52.49 -0.36 1.77 16 19 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 20 N -0.89 -24.07 13.96 55.43 0.77 -23.30 16 21 Si 0.86 20.03 26.91 -169.99 -4.57 15.45 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.26 -5.95 6.73 56.52 0.38 -5.57 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.09 1.45 7.80 -51.93 -0.40 1.04 16 28 H 0.25 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.11 1.39 7.81 -51.93 -0.41 0.98 16 30 H 0.09 1.18 7.75 -51.93 -0.40 0.78 16 31 H 0.42 6.23 8.64 -34.47 -0.30 5.94 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 34 H 0.08 1.34 6.56 -51.94 -0.34 1.00 16 35 H 0.05 1.10 7.96 -51.93 -0.41 0.69 16 36 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 1.00 7.86 -51.93 -0.41 0.59 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 333.14 15.07 5.02 5.02 Total: -1.00 -31.77 333.14 -6.23 -38.00 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -4.92 Total: 5.61 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: 0.54 Total: -3.09 kcal Atomic # 7 Polarization: -67.06 SS G_CDS: 0.22 Total: -66.84 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: -1.85 Total: -44.57 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.57 Total: 15.45 kcal Atomic # 16 Polarization: 51.07 SS G_CDS: -0.66 Total: 50.42 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -31.77 -6.23 -38.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907598196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.431 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds