Wall clock time and date at job start Tue Mar 31 2020 03:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00323 * 359.97438 * 7 2 1 9 9 N 1.36934 * 120.00389 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00548 * 180.02562 * 9 7 2 11 11 H 1.09002 * 112.84698 * 336.19076 * 10 9 7 12 12 C 1.53779 * 113.61716 * 107.49592 * 10 9 7 13 13 C 1.53786 * 87.07768 * 89.11939 * 12 10 9 14 14 H 1.08997 * 113.61536 * 270.88186 * 13 12 10 15 15 N 1.46506 * 113.68857 * 139.99011 * 13 12 10 16 16 C 1.34778 * 119.99439 * 107.46850 * 15 13 12 17 17 O 1.21276 * 120.00628 * 359.97438 * 16 15 13 18 18 C 1.50699 * 119.99682 * 180.02562 * 16 15 13 19 19 H 1.09002 * 108.58434 * 40.69628 * 18 16 15 20 20 C 1.53201 * 108.64478 * 282.69918 * 18 16 15 21 21 C 1.55348 * 106.34539 * 211.21445 * 20 18 16 22 22 S 1.83900 * 99.54281 * 37.18629 * 21 20 18 23 23 O 1.42098 * 111.46602 * 215.81965 * 22 21 20 24 24 O 1.42095 * 111.61756 * 75.80395 * 22 21 20 25 25 N 1.46447 * 108.65112 * 158.69693 * 18 16 15 26 26 C 1.53782 * 87.08291 * 25.43579 * 13 12 10 27 27 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 28 28 H 0.96999 * 119.99757 * 359.97438 * 9 7 2 29 29 H 1.09003 * 113.61500 * 203.66399 * 12 10 9 30 30 H 1.08996 * 113.61977 * 334.57233 * 12 10 9 31 31 H 0.96994 * 120.00554 * 287.46394 * 15 13 12 32 32 H 1.08997 * 110.10292 * 330.53797 * 20 18 16 33 33 H 1.09003 * 110.09861 * 92.15001 * 20 18 16 34 34 H 1.08998 * 111.49741 * 279.58163 * 21 20 18 35 35 H 1.09001 * 111.33357 * 154.72239 * 21 20 18 36 36 H 0.97003 * 126.07787 * 302.79568 * 25 18 16 37 37 H 1.08995 * 113.61377 * 220.02272 * 26 13 12 38 38 H 1.08993 * 113.61890 * 89.11209 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4704 -2.1375 0.0014 9 7 3.3797 -1.2021 0.0011 10 6 4.1122 -2.4707 0.0011 11 1 3.5279 -3.2969 0.4062 12 6 4.7877 -2.7921 -1.3425 13 6 6.0131 -2.0233 -0.8207 14 1 5.9877 -0.9570 -1.0455 15 7 7.2918 -2.6478 -1.1687 16 6 8.0821 -2.0880 -2.1060 17 8 7.7346 -1.0676 -2.6617 18 6 9.3972 -2.7307 -2.4644 19 1 9.2571 -3.8110 -2.5021 20 6 10.4158 -2.4069 -1.3669 21 6 11.8028 -2.3405 -2.0634 22 16 11.3090 -1.5565 -3.6519 23 8 12.0675 -2.0649 -4.7407 24 8 11.0609 -0.1662 -3.4946 25 7 9.7998 -2.2642 -3.7930 26 6 5.5260 -2.3658 0.5971 27 1 -0.4850 0.8401 0.0004 28 1 3.8646 -0.3620 0.0007 29 1 4.9720 -3.8555 -1.4953 30 1 4.3063 -2.3178 -2.1978 31 1 7.5697 -3.4641 -0.7246 32 1 10.1797 -1.4468 -0.9080 33 1 10.4160 -3.1934 -0.6122 34 1 12.2173 -3.3358 -2.2237 35 1 12.4960 -1.7092 -1.5075 36 1 9.2833 -2.3506 -4.6095 37 1 5.6405 -1.5474 1.3078 38 1 5.9120 -3.3126 0.9746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021065763.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:22 Heat of formation + Delta-G solvation = -55.146693 kcal Electronic energy + Delta-G solvation = -22798.932326 eV Core-core repulsion = 19191.229398 eV Total energy + Delta-G solvation = -3607.702928 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.41490 -38.61976 -37.41103 -36.61968 -36.17830 -34.27273 -32.76136 -32.24020 -30.41531 -27.73644 -25.30614 -24.53253 -23.21323 -22.34657 -20.71372 -20.00316 -19.14778 -18.18182 -17.89953 -17.54634 -16.94981 -16.30153 -16.05990 -15.20405 -15.11430 -14.82791 -14.66544 -14.20434 -13.90354 -13.85991 -13.22902 -12.96172 -12.72877 -12.47768 -12.40232 -12.30487 -12.28832 -12.18035 -12.15273 -11.82613 -11.03336 -10.99356 -10.90681 -10.52088 -10.43469 -10.31901 -9.95767 -9.64845 -9.46319 -9.01021 -8.88859 -7.35297 -5.82528 -3.19744 -0.17664 2.08801 2.42454 3.01375 3.17989 3.36914 3.37924 3.41565 3.45407 3.75090 3.96085 4.25975 4.45189 4.55486 4.65047 4.79254 4.85502 4.90804 4.99711 5.05876 5.13250 5.26588 5.35815 5.62085 5.71324 5.91205 6.00321 6.15582 6.40941 6.49599 6.59611 6.65946 6.81598 7.41690 7.93366 8.11051 8.36602 9.13660 9.86140 10.03910 11.35208 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.028206 B = 0.003088 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.440964 B = 9064.015310 C = 9545.375548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.009 3.991 3 Si 0.881 3.119 4 H -0.283 1.283 5 H -0.275 1.275 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.093 0.907 9 N -0.730 5.730 10 C 0.177 3.823 11 H 0.078 0.922 12 C -0.182 4.182 13 C 0.120 3.880 14 H 0.111 0.889 15 N -0.714 5.714 16 C 0.494 3.506 17 O -0.513 6.513 18 C 0.098 3.902 19 H 0.108 0.892 20 C -0.119 4.119 21 C -0.591 4.591 22 S 2.572 3.428 23 O -0.958 6.958 24 O -0.939 6.939 25 N -1.077 6.077 26 C -0.165 4.165 27 H 0.261 0.739 28 H 0.363 0.637 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.103 0.897 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.440 0.560 37 H 0.072 0.928 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.258 -11.142 -1.072 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.711 3.289 4 H -0.209 1.209 5 H -0.201 1.201 6 H -0.215 1.215 7 C -0.380 4.380 8 H 0.110 0.890 9 N -0.370 5.370 10 C 0.064 3.936 11 H 0.096 0.904 12 C -0.225 4.225 13 C 0.016 3.984 14 H 0.129 0.871 15 N -0.366 5.366 16 C 0.276 3.724 17 O -0.387 6.387 18 C -0.015 4.015 19 H 0.125 0.875 20 C -0.159 4.159 21 C -0.721 4.721 22 S 2.665 3.335 23 O -0.948 6.948 24 O -0.928 6.928 25 N -0.842 5.842 26 C -0.205 4.205 27 H 0.071 0.929 28 H 0.196 0.804 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.232 0.768 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.163 0.837 36 H 0.280 0.720 37 H 0.091 0.909 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 26.219 -9.733 -2.065 28.043 hybrid contribution 0.237 0.310 0.349 0.523 sum 26.456 -9.423 -1.716 28.136 Atomic orbital electron populations 1.69698 1.05124 1.26022 1.56892 1.24674 0.95250 0.97286 1.01564 0.86597 0.79453 0.84936 0.77880 1.20920 1.20116 1.21528 1.19077 0.80271 0.94872 1.43806 0.88956 1.42551 1.04109 1.01554 1.88758 1.20854 0.89744 0.90291 0.92692 0.90431 1.24289 0.96707 0.99233 1.02232 1.22717 0.80588 0.98900 0.96180 0.87123 1.46139 1.21080 1.28793 1.40577 1.20841 0.85829 0.85387 0.80344 1.90796 1.73370 1.23404 1.51125 1.21151 0.94592 1.01421 0.84319 0.87466 1.22346 0.88904 1.07127 0.97514 1.30744 1.04665 1.15031 1.21667 1.06476 0.74633 0.75310 0.77121 1.93621 1.70152 1.80908 1.50096 1.93703 1.83083 1.29932 1.86106 1.54731 1.38164 1.78732 1.12607 1.23917 0.99115 1.01805 0.95624 0.92908 0.80360 0.90781 0.90863 0.76840 0.87874 0.86056 0.83624 0.83692 0.71969 0.90897 0.89788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.02 13.97 55.49 0.78 -28.24 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.88 22.22 27.74 -169.99 -4.71 17.51 16 4 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 6 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.10 16 8 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 9 N -0.73 -16.77 5.11 -52.64 -0.27 -17.04 16 10 C 0.18 3.12 4.56 -67.12 -0.31 2.81 16 11 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 12 C -0.18 -2.85 7.68 -25.92 -0.20 -3.05 16 13 C 0.12 1.70 4.11 -67.11 -0.28 1.42 16 14 H 0.11 1.95 7.46 -51.93 -0.39 1.56 16 15 N -0.71 -7.16 5.36 -53.01 -0.28 -7.44 16 16 C 0.49 5.71 6.82 -10.99 -0.07 5.64 16 17 O -0.51 -8.84 16.13 5.56 0.09 -8.75 16 18 C 0.10 0.67 3.55 -69.01 -0.25 0.42 16 19 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 20 C -0.12 -0.51 6.04 -25.38 -0.15 -0.66 16 21 C -0.59 -2.06 7.65 38.40 0.29 -1.76 16 22 S 2.57 22.18 6.47 -107.50 -0.70 21.49 16 23 O -0.96 -10.96 18.14 -57.40 -1.04 -12.00 16 24 O -0.94 -12.72 18.14 -57.40 -1.04 -13.76 16 25 N -1.08 -9.08 6.13 -5.82 -0.04 -9.12 16 26 C -0.16 -2.18 7.58 -25.92 -0.20 -2.38 16 27 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 28 H 0.36 8.35 5.76 -40.82 -0.24 8.11 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 31 H 0.40 2.35 8.73 -40.82 -0.36 2.00 16 32 H 0.10 0.57 7.82 -51.93 -0.41 0.17 16 33 H 0.12 0.11 8.14 -51.93 -0.42 -0.31 16 34 H 0.15 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.14 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.44 3.58 8.96 -40.36 -0.36 3.22 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.08 0.83 8.12 -51.93 -0.42 0.41 16 LS Contribution 330.18 15.07 4.98 4.98 Total: -1.00 -40.61 330.18 -8.79 -49.40 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.14 Total: 7.48 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: -1.41 Total: -4.49 kcal Atomic # 7 Polarization: -62.02 SS G_CDS: 0.19 Total: -61.84 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -1.99 Total: -34.52 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.71 Total: 17.51 kcal Atomic # 16 Polarization: 22.18 SS G_CDS: -0.70 Total: 21.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -40.61 -8.79 -49.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021065763.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.746 kcal (2) G-P(sol) polarization free energy of solvation -40.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds