Wall clock time and date at job start Tue Mar 31 2020 03:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 120.00259 * 2 1 4 4 H 1.48508 * 109.46685 * 89.99762 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99841 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00560 * 3 2 1 7 7 C 1.38816 * 119.99569 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00401 * 0.02562 * 7 2 1 10 10 C 1.46490 * 120.00121 * 180.02562 * 9 7 2 11 11 H 1.09003 * 112.84892 * 23.79955 * 10 9 7 12 12 C 1.53780 * 113.61668 * 154.99448 * 10 9 7 13 13 C 1.53781 * 87.08232 * 139.97914 * 12 10 9 14 14 H 1.09005 * 113.61867 * 220.02192 * 13 12 10 15 15 N 1.46496 * 113.61392 * 89.20002 * 13 12 10 16 16 C 1.34777 * 120.00000 * 155.00035 * 15 13 12 17 17 O 1.21283 * 120.00447 * 0.02562 * 16 15 13 18 18 C 1.50702 * 119.99975 * 180.02562 * 16 15 13 19 19 H 1.08992 * 109.76355 * 319.30051 * 18 16 15 20 20 C 1.54114 * 109.76311 * 80.02740 * 18 16 15 21 21 C 1.54923 * 105.89879 * 165.31348 * 20 18 16 22 22 S 1.83180 * 102.70909 * 334.82874 * 21 20 18 23 23 O 1.42103 * 111.27292 * 111.03061 * 22 21 20 24 24 O 1.42093 * 111.27454 * 250.38127 * 22 21 20 25 25 N 1.47994 * 109.76528 * 198.57250 * 18 16 15 26 26 C 1.53782 * 113.61256 * 252.49493 * 10 9 7 27 27 H 0.97001 * 119.99885 * 179.97438 * 1 2 3 28 28 H 0.97000 * 119.99302 * 359.97438 * 9 7 2 29 29 H 1.08994 * 113.61573 * 254.52493 * 12 10 9 30 30 H 1.09004 * 113.60919 * 25.43453 * 12 10 9 31 31 H 0.96994 * 120.00449 * 335.00490 * 15 13 12 32 32 H 1.09005 * 110.16027 * 284.41362 * 20 18 16 33 33 H 1.08997 * 110.16835 * 46.13153 * 20 18 16 34 34 H 1.09002 * 110.76440 * 93.12698 * 21 20 18 35 35 H 1.08998 * 110.76575 * 216.34068 * 21 20 18 36 36 H 0.97001 * 127.76338 * 16.20083 * 25 18 16 37 37 H 1.08999 * 113.61640 * 334.56560 * 26 10 9 38 38 H 1.08997 * 113.61899 * 105.47187 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0463 1.4002 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3256 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 1 3.0652 -3.5640 0.4046 12 6 1.2597 -4.8290 0.5929 13 6 1.8482 -5.6974 -0.5316 14 1 1.1339 -6.4008 -0.9596 15 7 3.1246 -6.3252 -0.1813 16 6 3.5092 -7.4600 -0.7984 17 8 2.7989 -7.9612 -1.6441 18 6 4.8220 -8.1062 -0.4375 19 1 5.5852 -7.3398 -0.3026 20 6 4.6632 -8.9182 0.8627 21 6 5.9123 -9.8305 0.9486 22 16 6.4125 -9.9952 -0.8059 23 8 7.6377 -9.3211 -1.0582 24 8 6.1658 -11.3077 -1.2913 25 7 5.2329 -9.0382 -1.5112 26 6 1.9999 -4.4015 -1.3458 27 1 -0.4850 -0.8401 -0.0004 28 1 0.3556 -2.3880 -0.0016 29 1 1.5905 -5.1219 1.5892 30 1 0.1794 -4.7004 0.5251 31 1 3.6929 -5.9243 0.4948 32 1 4.6273 -8.2484 1.7219 33 1 3.7572 -9.5227 0.8199 34 1 6.7000 -9.3533 1.5317 35 1 5.6537 -10.8009 1.3723 36 1 4.8946 -9.0846 -2.4191 37 1 1.1221 -4.1561 -1.9434 38 1 2.9284 -4.3494 -1.9144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021065767.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:26 Heat of formation + Delta-G solvation = -61.354155 kcal Electronic energy + Delta-G solvation = -22553.977019 eV Core-core repulsion = 18946.004916 eV Total energy + Delta-G solvation = -3607.972104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.51551 -38.58220 -37.47916 -36.70484 -36.24605 -34.44917 -32.95274 -32.13353 -29.79818 -27.52406 -25.32787 -24.39199 -23.36862 -22.40663 -21.06697 -20.01574 -19.23156 -18.47608 -17.54455 -17.45186 -16.69031 -16.37224 -15.85471 -15.53232 -15.32566 -14.97075 -14.68139 -14.07578 -13.96386 -13.85913 -13.59413 -13.23705 -13.02215 -12.53757 -12.38473 -12.33883 -12.30094 -12.09395 -11.98899 -11.64065 -11.10554 -10.88311 -10.65893 -10.42348 -10.31119 -10.17680 -10.01933 -9.92971 -9.25576 -9.07765 -8.94306 -7.13627 -6.19625 -3.20578 -0.21493 2.01889 2.28104 2.83235 3.17803 3.46568 3.49325 3.51026 3.65259 3.79764 3.90051 4.23784 4.33250 4.59661 4.60513 4.69240 4.83187 4.96847 5.00721 5.12655 5.19050 5.24486 5.39655 5.67681 5.72416 5.87121 6.02967 6.11075 6.27038 6.42758 6.47693 6.72946 6.86647 7.28573 7.71688 7.93090 8.66155 9.11810 9.98186 10.12332 11.28442 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030307 B = 0.002671 C = 0.002572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.668985 B =10480.995023 C =10884.871073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.043 4.043 3 Si 1.083 2.917 4 H -0.295 1.295 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.339 4.339 8 H 0.066 0.934 9 N -0.724 5.724 10 C 0.172 3.828 11 H 0.076 0.924 12 C -0.160 4.160 13 C 0.115 3.885 14 H 0.098 0.902 15 N -0.701 5.701 16 C 0.524 3.476 17 O -0.524 6.524 18 C 0.084 3.916 19 H 0.115 0.885 20 C -0.115 4.115 21 C -0.601 4.601 22 S 2.579 3.421 23 O -0.949 6.949 24 O -0.957 6.957 25 N -1.081 6.081 26 C -0.176 4.176 27 H 0.256 0.744 28 H 0.369 0.631 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.403 0.597 32 H 0.114 0.886 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.442 0.558 37 H 0.085 0.915 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.963 -20.262 4.522 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.241 4.241 3 Si 0.913 3.087 4 H -0.222 1.222 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.470 4.470 8 H 0.084 0.916 9 N -0.363 5.363 10 C 0.060 3.940 11 H 0.094 0.906 12 C -0.200 4.200 13 C 0.010 3.990 14 H 0.116 0.884 15 N -0.352 5.352 16 C 0.307 3.693 17 O -0.399 6.399 18 C -0.028 4.028 19 H 0.133 0.867 20 C -0.155 4.155 21 C -0.731 4.731 22 S 2.673 3.327 23 O -0.939 6.939 24 O -0.946 6.946 25 N -0.849 5.849 26 C -0.219 4.219 27 H 0.067 0.933 28 H 0.203 0.797 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.238 0.762 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.163 0.837 35 H 0.164 0.836 36 H 0.285 0.715 37 H 0.104 0.896 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.289 -19.408 3.480 22.721 hybrid contribution -0.421 -1.193 0.427 1.335 sum 10.868 -20.600 3.908 23.617 Atomic orbital electron populations 1.70864 1.06092 1.28525 1.53166 1.25817 0.97029 1.01153 1.00098 0.83199 0.73936 0.75272 0.76276 1.22236 1.22079 1.21320 1.20112 0.92084 0.85841 1.48939 0.91612 1.42409 1.04812 1.00862 1.88193 1.21567 0.95089 0.84725 0.92656 0.90635 1.23880 1.01569 0.97299 0.97248 1.21860 0.84672 0.94178 0.98288 0.88390 1.45687 1.22450 1.25245 1.41778 1.19918 0.86689 0.80793 0.81898 1.90736 1.54032 1.63231 1.31944 1.22037 0.98167 0.94664 0.87965 0.86697 1.22416 0.97597 0.98641 0.96855 1.30767 1.08076 1.09844 1.24425 1.06152 0.74185 0.73967 0.78416 1.93675 1.42452 1.74695 1.83061 1.93621 1.84951 1.38311 1.77764 1.55366 1.59795 1.49230 1.20519 1.24313 1.02157 0.95066 1.00324 0.93302 0.79739 0.91545 0.89106 0.76228 0.86734 0.88124 0.83715 0.83609 0.71516 0.89627 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.41 13.70 55.49 0.76 -27.65 16 2 C -0.04 -1.22 5.50 -17.43 -0.10 -1.31 16 3 Si 1.08 25.23 29.92 -169.99 -5.09 20.14 16 4 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.34 -9.15 9.97 -15.06 -0.15 -9.30 16 8 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 9 N -0.72 -17.11 5.40 -52.64 -0.28 -17.39 16 10 C 0.17 3.07 4.36 -67.12 -0.29 2.77 16 11 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 12 C -0.16 -2.24 7.58 -25.92 -0.20 -2.43 16 13 C 0.12 1.52 4.32 -67.12 -0.29 1.23 16 14 H 0.10 1.37 7.46 -51.93 -0.39 0.99 16 15 N -0.70 -7.13 5.27 -53.01 -0.28 -7.41 16 16 C 0.52 5.61 7.09 -10.98 -0.08 5.53 16 17 O -0.52 -7.69 15.88 5.56 0.09 -7.60 16 18 C 0.08 0.60 3.29 -67.68 -0.22 0.38 16 19 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 20 C -0.12 -0.50 6.12 -25.13 -0.15 -0.65 16 21 C -0.60 -2.09 7.49 38.17 0.29 -1.81 16 22 S 2.58 20.09 6.40 -107.50 -0.69 19.40 16 23 O -0.95 -10.54 18.14 -57.41 -1.04 -11.58 16 24 O -0.96 -11.02 18.14 -57.41 -1.04 -12.06 16 25 N -1.08 -9.14 6.62 -4.53 -0.03 -9.17 16 26 C -0.18 -2.88 7.68 -25.91 -0.20 -3.08 16 27 H 0.26 7.55 6.77 -40.82 -0.28 7.28 16 28 H 0.37 9.02 6.75 -40.82 -0.28 8.75 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.32 8.12 -51.93 -0.42 0.90 16 31 H 0.40 3.03 8.70 -40.82 -0.36 2.67 16 32 H 0.11 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.48 8.10 -51.93 -0.42 0.06 16 34 H 0.14 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.15 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.44 3.99 8.54 -40.75 -0.35 3.64 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -38.49 331.55 -9.07 -47.56 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.07 Total: 9.44 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -1.39 Total: -8.67 kcal Atomic # 7 Polarization: -61.79 SS G_CDS: 0.17 Total: -61.62 kcal Atomic # 8 Polarization: -29.25 SS G_CDS: -1.99 Total: -31.24 kcal Atomic # 14 Polarization: 25.23 SS G_CDS: -5.09 Total: 20.14 kcal Atomic # 16 Polarization: 20.09 SS G_CDS: -0.69 Total: 19.40 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.49 -9.07 -47.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021065767.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.793 kcal (2) G-P(sol) polarization free energy of solvation -38.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds