Wall clock time and date at job start Tue Mar 31 2020 03:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00210 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00511 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99947 * 3 2 1 6 6 H 1.48501 * 109.47364 * 149.99932 * 3 2 1 7 7 C 1.38812 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99925 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85249 * 336.19811 * 10 9 7 12 12 C 1.53779 * 113.61541 * 107.50130 * 10 9 7 13 13 C 1.53785 * 87.08278 * 139.98197 * 12 10 9 14 14 H 1.08997 * 113.68566 * 89.12874 * 13 12 10 15 15 N 1.46500 * 113.61078 * 220.01914 * 13 12 10 16 16 C 1.34772 * 120.00001 * 252.49045 * 15 13 12 17 17 O 1.21283 * 120.00170 * 0.02562 * 16 15 13 18 18 C 1.50700 * 120.00257 * 180.02562 * 16 15 13 19 19 H 1.09003 * 109.34603 * 320.29608 * 18 16 15 20 20 C 1.54070 * 109.35450 * 80.00490 * 18 16 15 21 21 C 1.55601 * 104.29501 * 165.38542 * 20 18 16 22 22 S 1.83460 * 100.72269 * 322.07929 * 21 20 18 23 23 O 1.42103 * 111.24682 * 131.47741 * 22 21 20 24 24 O 1.42101 * 111.24497 * 270.72712 * 22 21 20 25 25 N 1.47057 * 109.35845 * 200.64346 * 18 16 15 26 26 C 1.53777 * 87.07773 * 334.56847 * 13 12 10 27 27 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00349 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61492 * 25.43635 * 12 10 9 30 30 H 1.08996 * 113.61942 * 254.53292 * 12 10 9 31 31 H 0.96996 * 119.99983 * 72.50567 * 15 13 12 32 32 H 1.08992 * 110.46686 * 46.67616 * 20 18 16 33 33 H 1.08998 * 110.57288 * 284.14163 * 20 18 16 34 34 H 1.08998 * 111.16392 * 204.21832 * 21 20 18 35 35 H 1.08993 * 111.20741 * 79.96075 * 21 20 18 36 36 H 0.97001 * 126.30339 * 30.81452 * 25 18 16 37 37 H 1.09005 * 113.61544 * 139.98145 * 26 13 12 38 38 H 1.09002 * 113.61834 * 270.88022 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0652 -3.5637 -0.4078 12 6 2.0000 -4.4027 1.3418 13 6 1.8483 -5.6979 0.5266 14 1 2.7979 -6.1647 0.2655 15 7 0.8882 -6.6437 1.1010 16 6 1.3263 -7.7714 1.6949 17 8 2.5153 -8.0030 1.7542 18 6 0.3387 -8.7446 2.2853 19 1 -0.4615 -8.1926 2.7784 20 6 -0.2576 -9.6125 1.1606 21 6 -0.9422 -10.7930 1.9083 22 16 0.2586 -11.0800 3.2653 23 8 -0.3967 -11.1655 4.5233 24 8 1.2603 -12.0106 2.8782 25 7 1.0223 -9.5947 3.2716 26 6 1.2596 -4.8285 -0.5970 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 1.1222 -4.1578 1.9398 30 1 2.9285 -4.3510 1.9104 31 1 -0.0627 -6.4583 1.0537 32 1 0.5313 -9.9823 0.5057 33 1 -0.9924 -9.0462 0.5885 34 1 -1.0269 -11.6695 1.2658 35 1 -1.9161 -10.4998 2.3000 36 1 1.7775 -9.3397 3.8243 37 1 1.5903 -5.1205 -1.5938 38 1 0.1793 -4.6999 -0.5292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001023101395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:30 Heat of formation + Delta-G solvation = -64.060952 kcal Electronic energy + Delta-G solvation = -22412.788761 eV Core-core repulsion = 18804.699282 eV Total energy + Delta-G solvation = -3608.089479 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.38242 -38.44371 -37.40253 -36.68266 -36.19677 -34.25067 -32.85368 -32.17558 -30.01377 -27.55491 -25.22797 -24.57299 -23.41808 -22.06614 -20.66765 -20.00233 -19.42648 -18.26994 -17.71367 -17.22631 -16.69179 -16.35574 -15.95211 -15.35517 -15.17896 -14.78443 -14.58597 -14.25405 -13.93515 -13.83310 -13.18133 -13.09341 -12.83874 -12.50499 -12.37624 -12.32084 -12.20237 -12.03173 -11.99003 -11.33887 -11.05613 -10.99496 -10.76000 -10.57793 -10.44981 -10.25524 -10.09249 -9.77251 -9.60967 -9.00394 -8.90596 -7.05754 -5.86537 -3.15643 -0.18914 2.07347 2.37033 2.97362 3.17247 3.38483 3.44341 3.45576 3.47209 3.81153 3.96418 4.27387 4.40135 4.53310 4.69315 4.79913 4.91795 4.94312 5.11740 5.14557 5.20916 5.26784 5.39837 5.77469 5.83199 6.01178 6.15217 6.20557 6.34729 6.52124 6.61875 6.70269 6.95426 7.40545 7.63205 8.03220 8.31968 9.43575 9.99224 10.33625 11.35793 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.042247 B = 0.002441 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.611032 B =11467.874384 C =11528.196167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.908 3.092 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.710 5.710 10 C 0.169 3.831 11 H 0.080 0.920 12 C -0.176 4.176 13 C 0.116 3.884 14 H 0.111 0.889 15 N -0.708 5.708 16 C 0.512 3.488 17 O -0.525 6.525 18 C 0.094 3.906 19 H 0.108 0.892 20 C -0.119 4.119 21 C -0.596 4.596 22 S 2.579 3.421 23 O -0.955 6.955 24 O -0.954 6.954 25 N -1.082 6.082 26 C -0.158 4.158 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.401 0.599 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.440 0.560 37 H 0.067 0.933 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.784 -21.695 1.972 22.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.739 3.261 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.377 4.377 8 H 0.090 0.910 9 N -0.348 5.348 10 C 0.056 3.944 11 H 0.098 0.902 12 C -0.219 4.219 13 C 0.011 3.989 14 H 0.129 0.871 15 N -0.359 5.359 16 C 0.295 3.705 17 O -0.401 6.401 18 C -0.019 4.019 19 H 0.126 0.874 20 C -0.159 4.159 21 C -0.727 4.727 22 S 2.673 3.327 23 O -0.945 6.945 24 O -0.943 6.943 25 N -0.850 5.850 26 C -0.198 4.198 27 H 0.066 0.934 28 H 0.219 0.781 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.236 0.764 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.164 0.836 35 H 0.164 0.836 36 H 0.281 0.719 37 H 0.086 0.914 38 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.664 -22.502 2.579 22.944 hybrid contribution -0.370 1.633 -0.224 1.689 sum -4.034 -20.869 2.355 21.386 Atomic orbital electron populations 1.69654 1.05165 1.25853 1.57405 1.24768 0.95548 0.97855 1.02636 0.86175 0.78717 0.83629 0.77569 1.21625 1.21734 1.20665 1.19310 0.91162 0.84121 1.43084 0.90969 1.42350 1.05673 0.99763 1.86987 1.21345 0.95537 0.84961 0.92580 0.90180 1.24348 1.01950 0.94956 1.00613 1.22571 0.93209 0.87384 0.95688 0.87143 1.46076 1.10785 1.21046 1.57990 1.20268 0.89469 0.82024 0.78760 1.90739 1.16547 1.75605 1.57175 1.21666 0.95371 0.94078 0.90774 0.87408 1.22633 1.01459 0.94736 0.97037 1.30853 1.15465 1.08002 1.18341 1.06133 0.76685 0.73367 0.76515 1.93646 1.76398 1.85465 1.38970 1.93646 1.55602 1.61246 1.83828 1.54981 1.47808 1.31018 1.51187 1.23874 1.01246 0.97279 0.97425 0.93408 0.78089 0.90120 0.92181 0.76425 0.87897 0.86114 0.83567 0.83550 0.71868 0.91398 0.89878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.17 13.06 55.49 0.72 -26.45 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.57 9.97 -15.06 -0.15 -6.72 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.71 -16.72 5.40 -52.64 -0.28 -17.01 16 10 C 0.17 3.06 4.48 -67.12 -0.30 2.76 16 11 H 0.08 1.47 8.10 -51.93 -0.42 1.04 16 12 C -0.18 -2.83 7.68 -25.92 -0.20 -3.03 16 13 C 0.12 1.52 4.24 -67.12 -0.28 1.23 16 14 H 0.11 1.54 7.46 -51.93 -0.39 1.16 16 15 N -0.71 -7.16 5.35 -53.02 -0.28 -7.44 16 16 C 0.51 5.55 7.05 -10.99 -0.08 5.47 16 17 O -0.53 -7.93 16.02 5.55 0.09 -7.84 16 18 C 0.09 0.66 3.41 -68.22 -0.23 0.43 16 19 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 20 C -0.12 -0.52 6.09 -24.79 -0.15 -0.68 16 21 C -0.60 -2.08 7.51 38.54 0.29 -1.79 16 22 S 2.58 20.76 6.50 -107.50 -0.70 20.06 16 23 O -0.96 -10.78 18.14 -57.41 -1.04 -11.82 16 24 O -0.95 -11.50 18.14 -57.41 -1.04 -12.54 16 25 N -1.08 -9.25 6.31 -5.08 -0.03 -9.29 16 26 C -0.16 -2.20 7.58 -25.92 -0.20 -2.40 16 27 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 28 H 0.39 9.53 7.92 -40.82 -0.32 9.21 16 29 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.40 2.92 8.73 -40.82 -0.36 2.56 16 32 H 0.10 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.12 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.15 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.15 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.44 3.95 8.76 -40.34 -0.35 3.60 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 LS Contribution 333.60 15.07 5.03 5.03 Total: -1.00 -37.68 333.60 -9.15 -46.83 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -5.19 Total: 8.85 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -1.40 Total: -5.15 kcal Atomic # 7 Polarization: -60.30 SS G_CDS: 0.12 Total: -60.18 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.99 Total: -32.20 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 20.76 SS G_CDS: -0.70 Total: 20.06 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -37.68 -9.15 -46.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023101395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.235 kcal (2) G-P(sol) polarization free energy of solvation -37.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds