Wall clock time and date at job start Tue Mar 31 2020 03:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86797 * 120.00210 * 2 1 4 4 H 1.48502 * 109.47339 * 270.00511 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99947 * 3 2 1 6 6 H 1.48501 * 109.47364 * 149.99932 * 3 2 1 7 7 C 1.38812 * 119.99920 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00084 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99808 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99925 * 179.97438 * 9 7 2 11 11 H 1.09002 * 112.85249 * 336.19811 * 10 9 7 12 12 C 1.53779 * 113.61541 * 107.50130 * 10 9 7 13 13 C 1.53785 * 87.08278 * 139.98197 * 12 10 9 14 14 H 1.08997 * 113.68566 * 89.12874 * 13 12 10 15 15 N 1.46500 * 113.61078 * 220.01914 * 13 12 10 16 16 C 1.34772 * 120.00001 * 252.49045 * 15 13 12 17 17 O 1.21283 * 120.00170 * 0.02562 * 16 15 13 18 18 C 1.50700 * 120.00257 * 180.02562 * 16 15 13 19 19 H 1.09003 * 109.34603 * 320.29608 * 18 16 15 20 20 C 1.54070 * 109.35450 * 80.00490 * 18 16 15 21 21 C 1.55601 * 104.29501 * 165.38542 * 20 18 16 22 22 S 1.83460 * 100.72269 * 322.07929 * 21 20 18 23 23 O 1.42103 * 111.24682 * 131.47741 * 22 21 20 24 24 O 1.42101 * 111.24497 * 270.72712 * 22 21 20 25 25 N 1.47057 * 109.35845 * 200.64346 * 18 16 15 26 26 C 1.53777 * 87.07773 * 334.56847 * 13 12 10 27 27 H 0.97001 * 119.99605 * 359.97438 * 1 2 3 28 28 H 0.96998 * 120.00349 * 0.02562 * 9 7 2 29 29 H 1.09003 * 113.61492 * 25.43635 * 12 10 9 30 30 H 1.08996 * 113.61942 * 254.53292 * 12 10 9 31 31 H 0.96996 * 119.99983 * 72.50567 * 15 13 12 32 32 H 1.08992 * 110.46686 * 46.67616 * 20 18 16 33 33 H 1.08998 * 110.57288 * 284.14163 * 20 18 16 34 34 H 1.08998 * 111.16392 * 204.21832 * 21 20 18 35 35 H 1.08993 * 111.20741 * 79.96075 * 21 20 18 36 36 H 0.97001 * 126.30339 * 30.81452 * 25 18 16 37 37 H 1.09005 * 113.61544 * 139.98145 * 26 13 12 38 38 H 1.09002 * 113.61834 * 270.88022 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 3.0652 -3.5637 -0.4078 12 6 2.0000 -4.4027 1.3418 13 6 1.8483 -5.6979 0.5266 14 1 2.7979 -6.1647 0.2655 15 7 0.8882 -6.6437 1.1010 16 6 1.3263 -7.7714 1.6949 17 8 2.5153 -8.0030 1.7542 18 6 0.3387 -8.7446 2.2853 19 1 -0.4615 -8.1926 2.7784 20 6 -0.2576 -9.6125 1.1606 21 6 -0.9422 -10.7930 1.9083 22 16 0.2586 -11.0800 3.2653 23 8 -0.3967 -11.1655 4.5233 24 8 1.2603 -12.0106 2.8782 25 7 1.0223 -9.5947 3.2716 26 6 1.2596 -4.8285 -0.5970 27 1 -0.4849 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0005 29 1 1.1222 -4.1578 1.9398 30 1 2.9285 -4.3510 1.9104 31 1 -0.0627 -6.4583 1.0537 32 1 0.5313 -9.9823 0.5057 33 1 -0.9924 -9.0462 0.5885 34 1 -1.0269 -11.6695 1.2658 35 1 -1.9161 -10.4998 2.3000 36 1 1.7775 -9.3397 3.8243 37 1 1.5903 -5.1205 -1.5938 38 1 0.1793 -4.6999 -0.5292 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001023101395.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:29 Heat of formation + Delta-G solvation = -97.753893 kcal Electronic energy + Delta-G solvation = -22414.249797 eV Core-core repulsion = 18804.699282 eV Total energy + Delta-G solvation = -3609.550515 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.29888 -39.59961 -38.12791 -37.40034 -36.91346 -35.78138 -34.26583 -32.67160 -31.81723 -28.26555 -26.51054 -26.21390 -24.25902 -23.15830 -21.55813 -20.82010 -20.50904 -19.25705 -18.88794 -18.32185 -17.52984 -17.36994 -16.68082 -16.45301 -16.17563 -15.92829 -15.76362 -15.36866 -14.93398 -14.57247 -14.44621 -14.19711 -13.69000 -13.40747 -13.25884 -13.24756 -13.14747 -13.07923 -12.97413 -12.82171 -12.47554 -12.23105 -12.16570 -12.05395 -11.73605 -11.53175 -11.49175 -11.04741 -10.85388 -10.42742 -9.98710 -8.96892 -7.95079 -5.22238 -0.73799 1.40634 1.49060 1.49158 1.57591 1.63525 2.16811 2.57422 2.65329 2.96778 3.37023 3.38896 3.48675 3.69695 3.75911 3.86992 3.94279 4.00267 4.23579 4.32972 4.34381 4.40374 4.66981 4.74919 4.84862 4.92182 4.92799 4.94902 5.16746 5.18915 5.38807 5.51893 5.70000 6.00101 6.28172 6.58670 7.22548 7.35096 8.11278 8.34365 9.27883 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.042247 B = 0.002441 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.611032 B =11467.874384 C =11528.196167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.074 0.926 9 N -0.723 5.723 10 C 0.146 3.854 11 H 0.074 0.926 12 C -0.172 4.172 13 C 0.137 3.863 14 H 0.104 0.896 15 N -0.697 5.697 16 C 0.511 3.489 17 O -0.574 6.574 18 C 0.091 3.909 19 H 0.144 0.856 20 C -0.121 4.121 21 C -0.550 4.550 22 S 2.567 3.433 23 O -0.997 6.997 24 O -1.007 7.007 25 N -1.093 6.093 26 C -0.136 4.136 27 H 0.251 0.749 28 H 0.377 0.623 29 H 0.074 0.926 30 H 0.048 0.952 31 H 0.419 0.581 32 H 0.095 0.905 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.182 0.818 36 H 0.434 0.566 37 H 0.083 0.917 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.437 -22.526 0.832 23.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.265 4.265 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.223 1.223 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.091 0.909 9 N -0.361 5.361 10 C 0.035 3.965 11 H 0.092 0.908 12 C -0.214 4.214 13 C 0.031 3.969 14 H 0.122 0.878 15 N -0.348 5.348 16 C 0.296 3.704 17 O -0.452 6.452 18 C -0.021 4.021 19 H 0.161 0.839 20 C -0.160 4.160 21 C -0.685 4.685 22 S 2.667 3.333 23 O -0.987 6.987 24 O -0.996 6.996 25 N -0.859 5.859 26 C -0.175 4.175 27 H 0.060 0.940 28 H 0.210 0.790 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.257 0.743 32 H 0.114 0.886 33 H 0.180 0.820 34 H 0.192 0.808 35 H 0.200 0.800 36 H 0.273 0.727 37 H 0.101 0.899 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.288 -23.391 1.473 24.026 hybrid contribution 0.167 1.852 0.098 1.862 sum -5.122 -21.539 1.572 22.195 Atomic orbital electron populations 1.69782 1.06382 1.26041 1.59506 1.25487 0.96374 1.00852 1.03810 0.85223 0.77706 0.79916 0.77418 1.21381 1.22286 1.19814 1.19668 0.91479 0.85503 1.40984 0.90853 1.42482 1.05421 1.00709 1.87466 1.21695 0.95761 0.84325 0.94703 0.90756 1.24180 1.01157 0.96607 0.99434 1.22111 0.93727 0.86834 0.94242 0.87781 1.45871 1.11248 1.20271 1.57425 1.20938 0.89497 0.82206 0.77730 1.90729 1.18944 1.76666 1.58860 1.22038 0.94800 0.93839 0.91439 0.83871 1.22846 1.02214 0.94841 0.96147 1.30661 1.14223 1.08858 1.14735 1.06279 0.77087 0.72603 0.77361 1.93590 1.76753 1.85825 1.42517 1.93578 1.58469 1.62977 1.84612 1.55038 1.47873 1.31479 1.51475 1.23651 1.01237 0.94438 0.98219 0.93993 0.79042 0.90716 0.93336 0.74277 0.88632 0.82017 0.80798 0.80021 0.72686 0.89885 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -56.80 13.06 21.65 0.28 -56.52 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 3 Si 0.97 45.00 29.55 68.60 2.03 47.03 16 4 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.24 -13.07 9.97 84.03 0.84 -12.23 16 8 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 9 N -0.72 -33.94 5.40 -320.45 -1.73 -35.67 16 10 C 0.15 5.18 4.48 45.52 0.20 5.38 16 11 H 0.07 2.70 8.10 -2.39 -0.02 2.68 16 12 C -0.17 -5.39 7.68 31.12 0.24 -5.15 16 13 C 0.14 3.32 4.24 45.52 0.19 3.51 16 14 H 0.10 2.77 7.46 -2.39 -0.02 2.75 16 15 N -0.70 -12.01 5.35 -440.04 -2.36 -14.36 16 16 C 0.51 9.97 7.05 87.66 0.62 10.58 16 17 O -0.57 -17.00 16.02 -3.04 -0.05 -17.05 16 18 C 0.09 0.99 3.41 44.50 0.15 1.14 16 19 H 0.14 0.59 8.14 -2.39 -0.02 0.57 16 20 C -0.12 -0.49 6.09 31.85 0.19 -0.29 16 21 C -0.55 -1.19 7.51 72.88 0.55 -0.64 16 22 S 2.57 39.07 6.50 -56.49 -0.37 38.71 16 23 O -1.00 -22.35 18.14 -127.77 -2.32 -24.67 16 24 O -1.01 -24.93 18.14 -127.77 -2.32 -27.25 16 25 N -1.09 -17.82 6.31 -170.00 -1.07 -18.89 16 26 C -0.14 -3.46 7.58 31.12 0.24 -3.23 16 27 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.38 18.64 7.92 -92.71 -0.73 17.91 16 29 H 0.07 2.44 8.14 -2.39 -0.02 2.43 16 30 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.42 4.32 8.73 -92.71 -0.81 3.51 16 32 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 33 H 0.16 -0.52 8.14 -2.39 -0.02 -0.54 16 34 H 0.17 -0.35 8.14 -2.39 -0.02 -0.37 16 35 H 0.18 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.43 8.10 8.76 -93.01 -0.81 7.28 16 37 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 38 H 0.09 2.24 8.09 -2.39 -0.02 2.22 16 Total: -1.00 -85.50 333.60 -5.46 -90.96 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -1.24 Total: 22.21 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 3.69 Total: -4.50 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -4.88 Total: -125.44 kcal Atomic # 8 Polarization: -64.28 SS G_CDS: -4.68 Total: -68.96 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 39.07 SS G_CDS: -0.37 Total: 38.71 kcal Total: -85.50 -5.46 -90.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001023101395.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.798 kcal (2) G-P(sol) polarization free energy of solvation -85.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds