Wall clock time and date at job start Tue Mar 31 2020 03:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99530 * 2 1 4 4 H 1.48506 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47109 * 300.00094 * 3 2 1 6 6 H 1.48499 * 109.46977 * 60.00145 * 3 2 1 7 7 C 1.38809 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99750 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.48813 * 179.97438 * 9 7 2 11 11 C 1.53957 * 86.11659 * 155.35909 * 10 9 7 12 12 N 1.46496 * 113.74094 * 137.94888 * 11 10 9 13 13 C 1.34774 * 119.99544 * 156.92813 * 12 11 10 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.47060 * 126.30410 * 274.68278 * 16 15 13 18 18 C 1.54322 * 109.97063 * 150.90504 * 17 16 15 19 19 C 1.55607 * 104.18895 * 45.51008 * 18 17 16 20 20 S 1.67009 * 126.29962 * 94.99942 * 16 15 13 21 21 O 1.42099 * 105.13476 * 298.88826 * 20 16 15 22 22 O 1.42107 * 105.13197 * 68.56324 * 20 16 15 23 23 C 1.47807 * 134.45690 * 359.86652 * 9 7 2 24 24 H 0.96999 * 120.00600 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.77244 * 41.06126 * 10 9 7 26 26 H 1.08995 * 113.77317 * 269.65775 * 10 9 7 27 27 H 1.08998 * 113.74224 * 269.15754 * 11 10 9 28 28 H 0.96994 * 120.00700 * 336.92933 * 12 11 10 29 29 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 30 30 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 31 31 H 1.08997 * 109.36062 * 271.19350 * 17 16 15 32 32 H 1.09008 * 109.35413 * 30.83032 * 17 16 15 33 33 H 1.08993 * 110.65191 * 286.77649 * 18 17 16 34 34 H 1.08998 * 110.38506 * 164.11206 * 18 17 16 35 35 H 1.08990 * 111.16464 * 204.05550 * 19 18 17 36 36 H 1.09007 * 111.16419 * 79.79040 * 19 18 17 37 37 H 1.09001 * 113.76820 * 90.38407 * 23 9 7 38 38 H 1.08996 * 113.83856 * 318.91932 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7203 -3.8100 -0.0015 11 6 0.3476 -4.0833 0.6399 12 7 -0.3330 -5.2614 0.0969 13 6 -1.2724 -5.8935 0.8281 14 8 -1.5545 -5.4867 1.9353 15 6 -1.9723 -7.1058 0.2699 16 7 -2.9398 -7.6055 1.2498 17 6 -2.6574 -8.5272 2.3604 18 6 -3.6321 -8.2614 3.5269 19 6 -5.0232 -8.1369 2.8407 20 16 -4.5682 -7.2389 1.3070 21 8 -4.6252 -5.8319 1.4980 22 8 -5.1292 -7.8620 0.1597 23 6 -0.1057 -2.7570 0.0024 24 1 -0.4851 0.8400 0.0004 25 1 2.5631 -4.0326 0.6530 26 1 1.8313 -4.2346 -0.9992 27 1 0.3609 -4.0646 1.7296 28 1 -0.1078 -5.5866 -0.7887 29 1 -2.4923 -6.8342 -0.6488 30 1 -1.2383 -7.8827 0.0558 31 1 -2.7737 -9.5547 2.0156 32 1 -1.6338 -8.3763 2.7037 33 1 -3.3753 -7.3341 4.0387 34 1 -3.6253 -9.0980 4.2255 35 1 -5.7116 -7.5515 3.4501 36 1 -5.4391 -9.1185 2.6133 37 1 -0.5318 -2.8718 -0.9943 38 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030403390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:11 Heat of formation + Delta-G solvation = -27.341318 kcal Electronic energy + Delta-G solvation = -23051.159291 eV Core-core repulsion = 19444.662095 eV Total energy + Delta-G solvation = -3606.497196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.56999 -37.81497 -37.10138 -36.94538 -35.92683 -33.48489 -33.25404 -31.76735 -28.44677 -27.15318 -25.87070 -24.79416 -23.07452 -22.35104 -20.46247 -19.64564 -18.94714 -17.51299 -17.29737 -16.79346 -16.67478 -15.90208 -15.66495 -15.07229 -14.89653 -14.70449 -14.51586 -14.07212 -13.80149 -13.54527 -13.27819 -13.03324 -12.58418 -12.15915 -12.00865 -11.98621 -11.88943 -11.81492 -11.43561 -11.39736 -11.20538 -10.86999 -10.76591 -10.72465 -10.39246 -10.06259 -9.95419 -9.52114 -8.94506 -8.79216 -8.39172 -6.89572 -5.74566 -3.09139 0.03151 2.25516 2.92021 3.39793 3.42156 3.45067 3.48862 3.52707 3.67152 4.04804 4.25405 4.47543 4.58593 4.64795 4.91630 5.01909 5.07119 5.15628 5.20171 5.26565 5.33202 5.50325 5.57401 5.60086 5.63732 6.03072 6.18809 6.23707 6.43562 6.57984 6.80265 7.27946 7.40173 7.60659 7.90875 7.99184 8.59082 9.04930 9.71414 10.58068 11.41968 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030444 B = 0.003138 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.514613 B = 8921.851627 C = 9236.189819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.006 4.006 3 Si 0.914 3.086 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.227 4.227 8 H 0.082 0.918 9 N -0.608 5.608 10 C 0.113 3.887 11 C 0.094 3.906 12 N -0.717 5.717 13 C 0.482 3.518 14 O -0.522 6.522 15 C 0.141 3.859 16 N -0.974 5.974 17 C 0.084 3.916 18 C -0.124 4.124 19 C -0.599 4.599 20 S 2.568 3.432 21 O -0.935 6.935 22 O -0.961 6.961 23 C 0.153 3.847 24 H 0.254 0.746 25 H 0.048 0.952 26 H 0.035 0.965 27 H 0.109 0.891 28 H 0.396 0.604 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.029 0.971 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.289 -23.103 4.166 24.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.216 1.216 7 C -0.354 4.354 8 H 0.100 0.900 9 N -0.335 5.335 10 C -0.014 4.014 11 C -0.011 4.011 12 N -0.370 5.370 13 C 0.265 3.735 14 O -0.397 6.397 15 C 0.012 3.988 16 N -0.814 5.814 17 C -0.042 4.042 18 C -0.164 4.164 19 C -0.729 4.729 20 S 2.663 3.337 21 O -0.924 6.924 22 O -0.951 6.951 23 C 0.027 3.973 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.127 0.873 28 H 0.230 0.770 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.093 0.907 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.158 0.842 36 H 0.157 0.843 37 H 0.047 0.953 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.933 -21.843 4.263 23.626 hybrid contribution 0.771 0.422 -0.043 0.880 sum -7.162 -21.420 4.220 22.977 Atomic orbital electron populations 1.69846 1.05036 1.25406 1.56019 1.24831 0.95678 0.97647 1.02162 0.86026 0.78657 0.83621 0.77293 1.20434 1.21711 1.21619 1.19017 0.90239 0.81642 1.44517 0.90036 1.45738 1.02482 0.99157 1.86073 1.22864 0.94617 0.86917 0.96994 1.23870 0.93198 0.84265 0.99816 1.46142 1.40032 1.31021 1.19768 1.21234 0.80452 0.85239 0.86561 1.90706 1.62929 1.66067 1.19955 1.20857 0.92710 0.95099 0.90146 1.56811 1.26263 1.60057 1.38307 1.22068 1.02666 0.93213 0.86232 1.22680 0.89275 1.06247 0.98164 1.30841 1.06049 1.15125 1.20908 1.06601 0.74310 0.75661 0.77113 1.93700 1.84619 1.28275 1.85847 1.93611 1.77014 1.78091 1.46343 1.22726 0.88036 0.89289 0.97280 0.93536 0.93370 0.94751 0.87271 0.77045 0.87528 0.87352 0.90707 0.88819 0.88153 0.87416 0.84157 0.84318 0.95323 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.09 11.39 55.49 0.63 -27.46 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 7 C -0.23 -6.46 10.70 -15.06 -0.16 -6.62 16 8 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 9 N -0.61 -15.85 3.70 -177.85 -0.66 -16.51 16 10 C 0.11 2.25 8.69 -2.96 -0.03 2.23 16 11 C 0.09 1.84 4.40 -70.12 -0.31 1.53 16 12 N -0.72 -10.76 5.37 -55.32 -0.30 -11.06 16 13 C 0.48 7.35 7.90 -10.98 -0.09 7.26 16 14 O -0.52 -10.19 16.05 5.56 0.09 -10.10 16 15 C 0.14 1.47 6.83 -5.19 -0.04 1.43 16 16 N -0.97 -10.24 2.80 -114.47 -0.32 -10.56 16 17 C 0.08 0.59 6.83 -3.04 -0.02 0.57 16 18 C -0.12 -0.76 6.81 -24.65 -0.17 -0.93 16 19 C -0.60 -3.79 7.51 38.54 0.29 -3.50 16 20 S 2.57 29.59 6.17 -107.50 -0.66 28.93 16 21 O -0.94 -15.74 18.13 -57.41 -1.04 -16.78 16 22 O -0.96 -13.19 18.14 -57.41 -1.04 -14.23 16 23 C 0.15 3.78 7.33 -2.83 -0.02 3.76 16 24 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 25 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.04 0.62 8.11 -51.93 -0.42 0.20 16 27 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 28 H 0.40 4.53 8.71 -40.82 -0.36 4.17 16 29 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.14 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.14 0.54 8.14 -51.92 -0.42 0.12 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 2.19 7.17 -51.93 -0.37 1.82 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -40.65 334.19 -9.23 -49.88 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -5.31 Total: -0.07 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.63 Total: 5.46 kcal Atomic # 7 Polarization: -64.95 SS G_CDS: -0.64 Total: -65.59 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.99 Total: -41.10 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 16 Polarization: 29.59 SS G_CDS: -0.66 Total: 28.93 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -40.65 -9.23 -49.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030403390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.539 kcal (2) G-P(sol) polarization free energy of solvation -40.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds