Wall clock time and date at job start Tue Mar 31 2020 03:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99530 * 2 1 4 4 H 1.48506 * 109.46778 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47109 * 300.00094 * 3 2 1 6 6 H 1.48499 * 109.46977 * 60.00145 * 3 2 1 7 7 C 1.38809 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99750 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99985 * 359.97438 * 7 2 1 10 10 C 1.47579 * 134.48813 * 179.97438 * 9 7 2 11 11 C 1.53957 * 86.11659 * 155.35909 * 10 9 7 12 12 N 1.46496 * 113.74094 * 137.94888 * 11 10 9 13 13 C 1.34774 * 119.99544 * 156.92813 * 12 11 10 14 14 O 1.21279 * 120.00472 * 0.02562 * 13 12 11 15 15 C 1.50706 * 120.00020 * 180.02562 * 13 12 11 16 16 N 1.46496 * 109.47106 * 179.97438 * 15 13 12 17 17 C 1.47060 * 126.30410 * 274.68278 * 16 15 13 18 18 C 1.54322 * 109.97063 * 150.90504 * 17 16 15 19 19 C 1.55607 * 104.18895 * 45.51008 * 18 17 16 20 20 S 1.67009 * 126.29962 * 94.99942 * 16 15 13 21 21 O 1.42099 * 105.13476 * 298.88826 * 20 16 15 22 22 O 1.42107 * 105.13197 * 68.56324 * 20 16 15 23 23 C 1.47807 * 134.45690 * 359.86652 * 9 7 2 24 24 H 0.96999 * 120.00600 * 359.97438 * 1 2 3 25 25 H 1.09002 * 113.77244 * 41.06126 * 10 9 7 26 26 H 1.08995 * 113.77317 * 269.65775 * 10 9 7 27 27 H 1.08998 * 113.74224 * 269.15754 * 11 10 9 28 28 H 0.96994 * 120.00700 * 336.92933 * 12 11 10 29 29 H 1.09001 * 109.46953 * 299.99667 * 15 13 12 30 30 H 1.09000 * 109.47318 * 59.99264 * 15 13 12 31 31 H 1.08997 * 109.36062 * 271.19350 * 17 16 15 32 32 H 1.09008 * 109.35413 * 30.83032 * 17 16 15 33 33 H 1.08993 * 110.65191 * 286.77649 * 18 17 16 34 34 H 1.08998 * 110.38506 * 164.11206 * 18 17 16 35 35 H 1.08990 * 111.16464 * 204.05550 * 19 18 17 36 36 H 1.09007 * 111.16419 * 79.79040 * 19 18 17 37 37 H 1.09001 * 113.76820 * 90.38407 * 23 9 7 38 38 H 1.08996 * 113.83856 * 318.91932 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0902 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 1.7203 -3.8100 -0.0015 11 6 0.3476 -4.0833 0.6399 12 7 -0.3330 -5.2614 0.0969 13 6 -1.2724 -5.8935 0.8281 14 8 -1.5545 -5.4867 1.9353 15 6 -1.9723 -7.1058 0.2699 16 7 -2.9398 -7.6055 1.2498 17 6 -2.6574 -8.5272 2.3604 18 6 -3.6321 -8.2614 3.5269 19 6 -5.0232 -8.1369 2.8407 20 16 -4.5682 -7.2389 1.3070 21 8 -4.6252 -5.8319 1.4980 22 8 -5.1292 -7.8620 0.1597 23 6 -0.1057 -2.7570 0.0024 24 1 -0.4851 0.8400 0.0004 25 1 2.5631 -4.0326 0.6530 26 1 1.8313 -4.2346 -0.9992 27 1 0.3609 -4.0646 1.7296 28 1 -0.1078 -5.5866 -0.7887 29 1 -2.4923 -6.8342 -0.6488 30 1 -1.2383 -7.8827 0.0558 31 1 -2.7737 -9.5547 2.0156 32 1 -1.6338 -8.3763 2.7037 33 1 -3.3753 -7.3341 4.0387 34 1 -3.6253 -9.0980 4.2255 35 1 -5.7116 -7.5515 3.4501 36 1 -5.4391 -9.1185 2.6133 37 1 -0.5318 -2.8718 -0.9943 38 1 -0.7183 -2.1402 0.6599 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030403390.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:50:10 Heat of formation + Delta-G solvation = -62.664286 kcal Electronic energy + Delta-G solvation = -23052.691010 eV Core-core repulsion = 19444.662095 eV Total energy + Delta-G solvation = -3608.028915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93600 -39.30329 -38.07339 -37.82515 -36.90882 -35.09166 -34.11522 -33.61140 -29.83554 -28.54445 -26.66593 -26.60946 -24.85560 -22.97906 -21.75975 -21.34234 -19.87250 -18.79166 -18.37576 -18.27680 -17.69621 -17.06869 -16.94820 -16.77820 -16.06476 -15.79852 -15.57729 -15.35894 -15.01315 -14.64139 -14.30306 -13.97991 -13.81412 -13.64346 -13.29602 -13.20259 -13.17623 -13.01026 -12.84178 -12.71043 -12.59245 -12.37673 -12.25247 -11.97890 -11.90996 -11.53215 -11.41574 -11.11867 -10.91655 -9.93077 -9.85845 -8.98782 -7.92924 -5.29114 -0.74692 1.43854 1.46322 1.48450 1.56838 1.71326 2.25219 2.50462 2.67195 3.05560 3.25198 3.37539 3.42444 3.65940 3.85229 3.89202 3.99106 4.11521 4.34321 4.36350 4.51340 4.53941 4.58468 4.73144 4.75050 4.88498 4.91384 5.04642 5.11511 5.19681 5.24965 5.46704 5.51344 5.74188 5.87973 6.70221 6.86027 7.39751 7.57070 8.50217 9.24053 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030444 B = 0.003138 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.514613 B = 8921.851627 C = 9236.189819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.073 4.073 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.292 1.292 6 H -0.294 1.294 7 C -0.234 4.234 8 H 0.093 0.907 9 N -0.640 5.640 10 C 0.126 3.874 11 C 0.123 3.877 12 N -0.706 5.706 13 C 0.476 3.524 14 O -0.570 6.570 15 C 0.142 3.858 16 N -0.979 5.979 17 C 0.074 3.926 18 C -0.126 4.126 19 C -0.556 4.556 20 S 2.542 3.458 21 O -1.009 7.009 22 O -0.994 6.994 23 C 0.147 3.853 24 H 0.247 0.753 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.417 0.583 29 H 0.116 0.884 30 H 0.160 0.840 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.178 0.822 37 H 0.024 0.976 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.092 -26.579 4.484 27.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.265 4.265 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.221 1.221 7 C -0.362 4.362 8 H 0.111 0.889 9 N -0.367 5.367 10 C 0.000 4.000 11 C 0.016 3.984 12 N -0.359 5.359 13 C 0.262 3.738 14 O -0.448 6.448 15 C 0.014 3.986 16 N -0.820 5.820 17 C -0.051 4.051 18 C -0.166 4.166 19 C -0.691 4.691 20 S 2.644 3.356 21 O -0.998 6.998 22 O -0.984 6.984 23 C 0.020 3.980 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.255 0.745 29 H 0.134 0.866 30 H 0.177 0.823 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.168 0.832 35 H 0.174 0.826 36 H 0.196 0.804 37 H 0.041 0.959 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.696 -25.369 4.507 26.622 hybrid contribution 0.378 1.360 -0.052 1.412 sum -6.318 -24.009 4.456 25.223 Atomic orbital electron populations 1.70078 1.06861 1.25617 1.58133 1.25775 0.96519 1.01437 1.02817 0.84918 0.78367 0.78863 0.76596 1.18212 1.21906 1.22146 1.19507 0.91046 0.82900 1.42760 0.88908 1.46089 1.03211 1.01069 1.86368 1.23008 0.94852 0.83266 0.98833 1.23067 0.93152 0.83833 0.98367 1.45892 1.39842 1.29404 1.20800 1.22287 0.79591 0.86109 0.85854 1.90691 1.64147 1.67619 1.22326 1.21059 0.93540 0.94014 0.90007 1.56790 1.25638 1.60188 1.39355 1.22446 1.02847 0.94211 0.85553 1.22838 0.88404 1.06896 0.98435 1.30630 1.06902 1.15786 1.15775 1.07036 0.74777 0.74909 0.78902 1.93621 1.85652 1.33236 1.87280 1.93561 1.77529 1.77842 1.49433 1.22619 0.87377 0.91636 0.96352 0.94378 0.91553 0.91314 0.89328 0.74521 0.86585 0.82297 0.86815 0.88911 0.90483 0.83205 0.82620 0.80433 0.95853 0.95584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.47 11.39 21.65 0.25 -61.23 16 2 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 3 Si 0.98 47.14 29.55 68.60 2.03 49.17 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 7 C -0.23 -13.43 10.70 84.03 0.90 -12.53 16 8 H 0.09 4.97 7.83 -2.91 -0.02 4.95 16 9 N -0.64 -33.77 3.70 -716.58 -2.65 -36.42 16 10 C 0.13 4.80 8.69 86.49 0.75 5.55 16 11 C 0.12 4.86 4.40 46.76 0.21 5.07 16 12 N -0.71 -20.50 5.37 -447.31 -2.40 -22.90 16 13 C 0.48 14.33 7.90 87.66 0.69 15.02 16 14 O -0.57 -22.95 16.05 -3.02 -0.05 -23.00 16 15 C 0.14 2.70 6.83 85.64 0.59 3.28 16 16 N -0.98 -18.98 2.80 -516.08 -1.45 -20.43 16 17 C 0.07 0.79 6.83 86.72 0.59 1.39 16 18 C -0.13 -1.12 6.81 31.94 0.22 -0.90 16 19 C -0.56 -5.21 7.51 72.88 0.55 -4.67 16 20 S 2.54 58.00 6.17 -56.49 -0.35 57.65 16 21 O -1.01 -36.27 18.13 -127.77 -2.32 -38.59 16 22 O -0.99 -27.10 18.14 -127.77 -2.32 -29.41 16 23 C 0.15 7.59 7.33 86.45 0.63 8.23 16 24 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 25 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 26 H 0.07 2.24 8.11 -2.39 -0.02 2.22 16 27 H 0.09 3.92 7.51 -2.39 -0.02 3.90 16 28 H 0.42 8.56 8.71 -92.71 -0.81 7.75 16 29 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.16 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.09 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.16 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.18 0.43 8.14 -2.38 -0.02 0.41 16 37 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.03 1.58 7.17 -2.39 -0.02 1.57 16 Total: -1.00 -96.41 334.19 -3.40 -99.81 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 0.27 Total: 8.76 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 5.59 Total: 16.58 kcal Atomic # 7 Polarization: -134.72 SS G_CDS: -6.26 Total: -140.97 kcal Atomic # 8 Polarization: -86.31 SS G_CDS: -4.68 Total: -91.00 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Atomic # 16 Polarization: 58.00 SS G_CDS: -0.35 Total: 57.65 kcal Total: -96.41 -3.40 -99.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030403390.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.144 kcal (2) G-P(sol) polarization free energy of solvation -96.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds