Wall clock time and date at job start Tue Mar 31 2020 03:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99845 * 2 1 4 4 H 1.48497 * 109.47194 * 274.98222 * 3 2 1 5 5 H 1.48498 * 109.47350 * 34.98938 * 3 2 1 6 6 H 1.48502 * 109.46825 * 154.98346 * 3 2 1 7 7 C 1.38815 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00206 * 185.06684 * 7 2 1 9 9 N 1.36939 * 119.99626 * 5.06754 * 7 2 1 10 10 C 1.47585 * 134.48895 * 173.48084 * 9 7 2 11 11 C 1.53948 * 86.11484 * 155.35605 * 10 9 7 12 12 N 1.46503 * 113.74000 * 137.95101 * 11 10 9 13 13 C 1.34778 * 119.99739 * 156.92465 * 12 11 10 14 14 O 1.21571 * 120.00383 * 0.02562 * 13 12 11 15 15 C 1.47709 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.39996 * 119.96604 * 359.97438 * 15 13 12 17 17 C 1.36601 * 120.46254 * 179.97438 * 16 15 13 18 18 C 1.38804 * 120.21030 * 0.02562 * 17 16 15 19 19 O 1.35175 * 133.65275 * 179.97438 * 18 17 16 20 20 C 1.34402 * 108.24766 * 180.02562 * 19 18 17 21 21 O 1.35171 * 124.90938 * 179.97438 * 20 19 18 22 22 N 1.30583 * 110.17842 * 359.97438 * 20 19 18 23 23 C 1.36220 * 108.68341 * 0.02562 * 22 20 19 24 24 C 1.39217 * 133.66657 * 179.97438 * 23 22 20 25 25 C 1.47809 * 134.45959 * 353.34205 * 9 7 2 26 26 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.76828 * 41.05847 * 10 9 7 28 28 H 1.08994 * 113.76580 * 269.65430 * 10 9 7 29 29 H 1.09003 * 113.74272 * 269.15139 * 11 10 9 30 30 H 0.96994 * 120.00195 * 336.92908 * 12 11 10 31 31 H 1.08001 * 119.76560 * 359.73187 * 16 15 13 32 32 H 1.07995 * 119.89698 * 179.97438 * 17 16 15 33 33 H 0.96707 * 114.00121 * 359.97438 * 21 20 19 34 34 H 1.08002 * 120.26353 * 0.02562 * 24 23 22 35 35 H 1.09003 * 113.76522 * 90.38350 * 25 9 7 36 36 H 1.09000 * 113.83690 * 318.92176 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2039 0.0831 9 7 1.3295 -2.3858 -0.1037 10 6 1.7287 -3.7985 -0.2551 11 6 0.3710 -4.1417 0.3844 12 7 -0.3174 -5.2634 -0.2592 13 6 -1.2389 -5.9703 0.4247 14 8 -1.4991 -5.6770 1.5754 15 6 -1.9325 -7.1016 -0.2240 16 6 -1.6327 -7.4385 -1.5493 17 6 -2.2677 -8.4831 -2.1589 18 6 -3.2188 -9.2214 -1.4682 19 8 -3.9943 -10.2800 -1.7925 20 6 -4.7462 -10.5940 -0.7236 21 8 -5.6445 -11.6030 -0.6793 22 7 -4.4834 -9.7832 0.2657 23 6 -3.5315 -8.8964 -0.1379 24 6 -2.8841 -7.8320 0.4836 25 6 -0.1001 -2.7610 -0.1072 26 1 -0.4851 0.8400 -0.0004 27 1 2.5859 -4.0807 0.3561 28 1 1.8196 -4.1206 -1.2924 29 1 0.4075 -4.2320 1.4701 30 1 -0.1101 -5.4973 -1.1774 31 1 -0.8971 -6.8661 -2.0948 32 1 -2.0297 -8.7348 -3.1818 33 1 -5.7132 -12.1050 -1.5030 34 1 -3.1179 -7.5749 1.5062 35 1 -0.5475 -2.7776 -1.1010 36 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030478302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:33 Heat of formation + Delta-G solvation = 33.027416 kcal Electronic energy + Delta-G solvation = -23131.289467 eV Core-core repulsion = 19391.966104 eV Total energy + Delta-G solvation = -3739.323363 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.69416 -40.03769 -38.81186 -37.95538 -37.10951 -35.12387 -33.63226 -31.92118 -31.10309 -29.77690 -27.46585 -24.93482 -24.85062 -23.77797 -22.95665 -22.22094 -21.08127 -19.87698 -19.73577 -18.11721 -17.74030 -17.64441 -16.81416 -16.22157 -15.71032 -15.53439 -15.03042 -14.67876 -14.54870 -14.37619 -14.19299 -13.85947 -13.78187 -13.31235 -12.83797 -12.58774 -11.98406 -11.85815 -11.52710 -11.49479 -11.41836 -10.90065 -10.82137 -10.80307 -10.49692 -10.08194 -9.74588 -9.55925 -9.15846 -8.82805 -8.70183 -8.49855 -6.94050 -5.81240 -3.14589 0.40727 0.48239 1.48036 2.01479 2.56704 2.77992 3.30858 3.38772 3.44036 3.45889 3.63473 4.07057 4.37389 4.43848 4.57980 4.65573 4.68787 4.96966 5.09539 5.22584 5.43192 5.54865 5.65141 5.68703 5.81402 5.89523 5.97321 6.10545 6.18576 6.29279 6.37009 6.51942 6.68495 7.21021 7.28048 7.30898 7.52880 7.77309 7.93187 8.41290 8.99864 9.66212 10.52825 11.36024 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.002428 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.184644 B =11527.128375 C =11657.337694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.913 3.087 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.227 4.227 8 H 0.083 0.917 9 N -0.607 5.607 10 C 0.113 3.887 11 C 0.091 3.909 12 N -0.707 5.707 13 C 0.557 3.443 14 O -0.532 6.532 15 C -0.119 4.119 16 C -0.068 4.068 17 C -0.088 4.088 18 C 0.022 3.978 19 O -0.244 6.244 20 C 0.434 3.566 21 O -0.390 6.390 22 N -0.468 5.468 23 C 0.038 3.962 24 C -0.003 4.003 25 C 0.157 3.843 26 H 0.255 0.745 27 H 0.050 0.950 28 H 0.036 0.964 29 H 0.113 0.887 30 H 0.396 0.604 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.425 0.575 34 H 0.154 0.846 35 H 0.031 0.969 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.177 -23.377 -7.583 25.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.202 4.202 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.355 4.355 8 H 0.100 0.900 9 N -0.334 5.334 10 C -0.014 4.014 11 C -0.014 4.014 12 N -0.358 5.358 13 C 0.343 3.657 14 O -0.410 6.410 15 C -0.123 4.123 16 C -0.087 4.087 17 C -0.107 4.107 18 C -0.028 4.028 19 O -0.140 6.140 20 C 0.184 3.816 21 O -0.190 6.190 22 N -0.214 5.214 23 C -0.073 4.073 24 C -0.023 4.023 25 C 0.030 3.970 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.053 0.947 29 H 0.131 0.869 30 H 0.231 0.769 31 H 0.165 0.835 32 H 0.160 0.840 33 H 0.282 0.718 34 H 0.172 0.828 35 H 0.049 0.951 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.753 -22.715 -5.601 24.646 hybrid contribution 0.605 0.306 -1.973 2.086 sum -7.148 -22.409 -7.574 24.710 Atomic orbital electron populations 1.69842 1.05097 1.25594 1.55683 1.24861 0.95702 0.97696 1.01975 0.86093 0.78750 0.83386 0.77498 1.21576 1.21621 1.20457 1.18979 0.90738 0.81639 1.44107 0.89973 1.45706 1.02415 1.00547 1.84720 1.22874 0.94638 0.86786 0.97132 1.24014 0.93353 0.85116 0.98913 1.46061 1.40370 1.32983 1.16379 1.17973 0.79898 0.81779 0.86081 1.90807 1.64150 1.68886 1.17137 1.19945 0.99449 0.98256 0.94684 1.20906 0.98580 0.95529 0.93655 1.19483 0.95255 0.95270 1.00682 1.20084 0.96933 0.89663 0.96086 1.84458 1.46319 1.43374 1.39886 1.23043 0.87508 0.90157 0.80854 1.85194 1.52051 1.40261 1.41508 1.70930 1.18345 1.06976 1.25145 1.19476 0.97414 0.98231 0.92150 1.20392 0.91445 0.89673 1.00756 1.22666 0.88088 0.87902 0.98304 0.93471 0.93143 0.94686 0.86913 0.76918 0.83482 0.83987 0.71758 0.82816 0.95078 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.24 11.51 55.49 0.64 -26.60 16 2 C -0.01 -0.14 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.98 29.56 -169.99 -5.02 16.96 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.23 -6.31 10.70 -15.06 -0.16 -6.47 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.31 3.70 -177.88 -0.66 -15.96 16 10 C 0.11 2.16 8.69 -2.96 -0.03 2.13 16 11 C 0.09 1.70 4.40 -70.14 -0.31 1.39 16 12 N -0.71 -10.29 5.32 -56.33 -0.30 -10.59 16 13 C 0.56 8.60 7.77 -12.39 -0.10 8.50 16 14 O -0.53 -10.38 15.95 5.30 0.08 -10.29 16 15 C -0.12 -1.45 5.87 -104.99 -0.62 -2.07 16 16 C -0.07 -0.60 9.47 -39.51 -0.37 -0.98 16 17 C -0.09 -0.73 9.99 -39.96 -0.40 -1.13 16 18 C 0.02 0.23 7.42 -38.53 -0.29 -0.05 16 19 O -0.24 -2.22 10.78 -20.31 -0.22 -2.44 16 20 C 0.43 4.13 9.53 52.23 0.50 4.63 16 21 O -0.39 -2.18 13.62 -40.50 -0.55 -2.73 16 22 N -0.47 -6.04 11.38 -12.82 -0.15 -6.19 16 23 C 0.04 0.48 7.22 -84.71 -0.61 -0.14 16 24 C 0.00 -0.04 9.64 -38.83 -0.37 -0.41 16 25 C 0.16 3.67 7.24 -2.84 -0.02 3.65 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.61 8.11 -51.93 -0.42 0.19 16 29 H 0.11 2.30 7.51 -51.93 -0.39 1.91 16 30 H 0.40 4.39 6.72 -40.82 -0.27 4.11 16 31 H 0.15 0.91 6.37 -52.49 -0.33 0.58 16 32 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.43 -0.50 9.06 45.56 0.41 -0.09 16 34 H 0.15 2.07 7.64 -52.49 -0.40 1.67 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 1.98 7.37 -51.93 -0.38 1.60 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -36.75 319.83 -6.83 -43.59 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: -2.60 Total: 0.62 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -2.87 Total: 8.82 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -0.47 Total: -59.34 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.69 Total: -15.46 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -36.75 -6.83 -43.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030478302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.613 kcal (2) G-P(sol) polarization free energy of solvation -36.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds