Wall clock time and date at job start Tue Mar 31 2020 03:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86796 * 119.99845 * 2 1 4 4 H 1.48497 * 109.47194 * 274.98222 * 3 2 1 5 5 H 1.48498 * 109.47350 * 34.98938 * 3 2 1 6 6 H 1.48502 * 109.46825 * 154.98346 * 3 2 1 7 7 C 1.38815 * 120.00158 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00206 * 185.06684 * 7 2 1 9 9 N 1.36939 * 119.99626 * 5.06754 * 7 2 1 10 10 C 1.47585 * 134.48895 * 173.48084 * 9 7 2 11 11 C 1.53948 * 86.11484 * 155.35605 * 10 9 7 12 12 N 1.46503 * 113.74000 * 137.95101 * 11 10 9 13 13 C 1.34778 * 119.99739 * 156.92465 * 12 11 10 14 14 O 1.21571 * 120.00383 * 0.02562 * 13 12 11 15 15 C 1.47709 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.39996 * 119.96604 * 359.97438 * 15 13 12 17 17 C 1.36601 * 120.46254 * 179.97438 * 16 15 13 18 18 C 1.38804 * 120.21030 * 0.02562 * 17 16 15 19 19 O 1.35175 * 133.65275 * 179.97438 * 18 17 16 20 20 C 1.34402 * 108.24766 * 180.02562 * 19 18 17 21 21 O 1.35171 * 124.90938 * 179.97438 * 20 19 18 22 22 N 1.30583 * 110.17842 * 359.97438 * 20 19 18 23 23 C 1.36220 * 108.68341 * 0.02562 * 22 20 19 24 24 C 1.39217 * 133.66657 * 179.97438 * 23 22 20 25 25 C 1.47809 * 134.45959 * 353.34205 * 9 7 2 26 26 H 0.97000 * 120.00392 * 0.02562 * 1 2 3 27 27 H 1.08998 * 113.76828 * 41.05847 * 10 9 7 28 28 H 1.08994 * 113.76580 * 269.65430 * 10 9 7 29 29 H 1.09003 * 113.74272 * 269.15139 * 11 10 9 30 30 H 0.96994 * 120.00195 * 336.92908 * 12 11 10 31 31 H 1.08001 * 119.76560 * 359.73187 * 16 15 13 32 32 H 1.07995 * 119.89698 * 179.97438 * 17 16 15 33 33 H 0.96707 * 114.00121 * 359.97438 * 21 20 19 34 34 H 1.08002 * 120.26353 * 0.02562 * 24 23 22 35 35 H 1.09003 * 113.76522 * 90.38350 * 25 9 7 36 36 H 1.09000 * 113.83690 * 318.92176 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3923 2.1072 -1.3948 5 1 1.5043 2.6199 0.8028 6 1 3.5964 1.4120 0.5921 7 6 2.0103 -1.2022 0.0005 8 1 3.0870 -1.2039 0.0831 9 7 1.3295 -2.3858 -0.1037 10 6 1.7287 -3.7985 -0.2551 11 6 0.3710 -4.1417 0.3844 12 7 -0.3174 -5.2634 -0.2592 13 6 -1.2389 -5.9703 0.4247 14 8 -1.4991 -5.6770 1.5754 15 6 -1.9325 -7.1016 -0.2240 16 6 -1.6327 -7.4385 -1.5493 17 6 -2.2677 -8.4831 -2.1589 18 6 -3.2188 -9.2214 -1.4682 19 8 -3.9943 -10.2800 -1.7925 20 6 -4.7462 -10.5940 -0.7236 21 8 -5.6445 -11.6030 -0.6793 22 7 -4.4834 -9.7832 0.2657 23 6 -3.5315 -8.8964 -0.1379 24 6 -2.8841 -7.8320 0.4836 25 6 -0.1001 -2.7610 -0.1072 26 1 -0.4851 0.8400 -0.0004 27 1 2.5859 -4.0807 0.3561 28 1 1.8196 -4.1206 -1.2924 29 1 0.4075 -4.2320 1.4701 30 1 -0.1101 -5.4973 -1.1774 31 1 -0.8971 -6.8661 -2.0948 32 1 -2.0297 -8.7348 -3.1818 33 1 -5.7132 -12.1050 -1.5030 34 1 -3.1179 -7.5749 1.5062 35 1 -0.5475 -2.7776 -1.1010 36 1 -0.7002 -2.2164 0.6218 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030478302.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:32 Heat of formation + Delta-G solvation = 0.473404 kcal Electronic energy + Delta-G solvation = -23132.701115 eV Core-core repulsion = 19391.966104 eV Total energy + Delta-G solvation = -3740.735011 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.45144 -41.27205 -39.70830 -39.13123 -38.18051 -35.94358 -35.17641 -33.79439 -31.98442 -30.71259 -29.28634 -26.59796 -26.09992 -24.57879 -24.45176 -23.04168 -22.18076 -21.37385 -20.66317 -19.05308 -18.74682 -18.68278 -18.37835 -17.51293 -16.95116 -16.60933 -16.33088 -15.98832 -15.69678 -15.58810 -15.14039 -14.88037 -14.80802 -14.57826 -14.12597 -13.66080 -13.57052 -13.29197 -13.17731 -12.81306 -12.72127 -12.62274 -12.30125 -12.19258 -11.94223 -11.60704 -11.49920 -11.10135 -10.86965 -10.13599 -9.85415 -9.47099 -8.94424 -7.92071 -5.26186 -0.42496 -0.33907 0.78610 1.26552 1.47212 1.49158 1.58397 1.72166 1.87072 2.17814 2.50972 2.64821 3.25815 3.27531 3.39225 3.61907 3.78614 3.84910 3.86362 3.99947 4.12200 4.34851 4.52724 4.59240 4.79767 4.83965 4.94825 4.97008 5.01906 5.09266 5.17515 5.24983 5.35245 5.50842 5.70333 5.80284 5.90669 6.56338 6.66025 6.89458 7.21413 7.59574 8.52879 9.25498 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.002428 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.184644 B =11527.128375 C =11657.337694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.070 4.070 3 Si 0.981 3.019 4 H -0.285 1.285 5 H -0.298 1.298 6 H -0.264 1.264 7 C -0.233 4.233 8 H 0.091 0.909 9 N -0.641 5.641 10 C 0.124 3.876 11 C 0.119 3.881 12 N -0.690 5.690 13 C 0.558 3.442 14 O -0.582 6.582 15 C -0.124 4.124 16 C -0.058 4.058 17 C -0.069 4.069 18 C 0.020 3.980 19 O -0.231 6.231 20 C 0.453 3.547 21 O -0.382 6.382 22 N -0.520 5.520 23 C 0.018 3.982 24 C -0.024 4.024 25 C 0.154 3.846 26 H 0.248 0.752 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.418 0.582 31 H 0.182 0.818 32 H 0.185 0.815 33 H 0.453 0.547 34 H 0.131 0.869 35 H 0.032 0.968 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.930 -25.495 -10.479 28.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.263 4.263 3 Si 0.809 3.191 4 H -0.212 1.212 5 H -0.225 1.225 6 H -0.188 1.188 7 C -0.361 4.361 8 H 0.109 0.891 9 N -0.368 5.368 10 C -0.001 4.001 11 C 0.013 3.987 12 N -0.342 5.342 13 C 0.346 3.654 14 O -0.462 6.462 15 C -0.129 4.129 16 C -0.076 4.076 17 C -0.087 4.087 18 C -0.030 4.030 19 O -0.127 6.127 20 C 0.203 3.797 21 O -0.187 6.187 22 N -0.268 5.268 23 C -0.092 4.092 24 C -0.044 4.044 25 C 0.027 3.973 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.257 0.743 31 H 0.200 0.800 32 H 0.202 0.798 33 H 0.316 0.684 34 H 0.149 0.851 35 H 0.049 0.951 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.485 -24.922 -8.566 27.139 hybrid contribution 0.116 0.757 -1.092 1.334 sum -6.368 -24.165 -9.658 26.791 Atomic orbital electron populations 1.70045 1.06691 1.25728 1.57830 1.25735 0.96539 1.01235 1.02783 0.85024 0.77895 0.78889 0.77322 1.21178 1.22540 1.18826 1.19422 0.91403 0.82913 1.42377 0.89092 1.46037 1.03367 1.02213 1.85178 1.23033 0.94814 0.83061 0.99200 1.23260 0.93241 0.84268 0.97977 1.45701 1.39799 1.31488 1.17251 1.18453 0.79306 0.82123 0.85470 1.90789 1.65554 1.70358 1.19534 1.19636 0.99698 0.97347 0.96213 1.21219 0.98798 0.95723 0.91884 1.19938 0.93152 0.93565 1.02044 1.20440 0.97287 0.89942 0.95328 1.84487 1.46020 1.42850 1.39360 1.23060 0.86760 0.89682 0.80162 1.85218 1.50438 1.39261 1.43833 1.70836 1.20025 1.08723 1.27240 1.19501 0.97906 0.98354 0.93464 1.20252 0.92897 0.91012 1.00267 1.22563 0.87291 0.90278 0.97148 0.94284 0.91586 0.90960 0.88910 0.74321 0.80040 0.79753 0.68385 0.85147 0.95071 0.95501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.66 11.51 21.65 0.25 -58.41 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 3 Si 0.98 45.67 29.56 68.60 2.03 47.70 16 4 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.23 -12.90 10.70 84.03 0.90 -12.00 16 8 H 0.09 4.73 7.83 -2.92 -0.02 4.71 16 9 N -0.64 -32.16 3.70 -716.69 -2.65 -34.82 16 10 C 0.12 4.47 8.69 86.49 0.75 5.22 16 11 C 0.12 4.41 4.40 46.75 0.21 4.62 16 12 N -0.69 -19.02 5.32 -450.38 -2.40 -21.42 16 13 C 0.56 17.25 7.77 86.75 0.67 17.93 16 14 O -0.58 -23.84 15.95 -3.94 -0.06 -23.90 16 15 C -0.12 -2.95 5.87 -20.10 -0.12 -3.07 16 16 C -0.06 -0.82 9.47 22.31 0.21 -0.61 16 17 C -0.07 -0.85 9.99 22.02 0.22 -0.63 16 18 C 0.02 0.37 7.42 22.95 0.17 0.54 16 19 O -0.23 -3.55 10.78 10.02 0.11 -3.44 16 20 C 0.45 7.87 9.53 130.43 1.24 9.11 16 21 O -0.38 -3.37 13.62 -62.23 -0.85 -4.22 16 22 N -0.52 -13.47 11.38 -422.84 -4.81 -18.28 16 23 C 0.02 0.45 7.22 39.24 0.28 0.73 16 24 C -0.02 -0.65 9.64 22.75 0.22 -0.43 16 25 C 0.15 7.37 7.24 86.44 0.63 8.00 16 26 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 27 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.07 2.16 8.11 -2.39 -0.02 2.14 16 29 H 0.09 3.88 7.51 -2.39 -0.02 3.86 16 30 H 0.42 7.76 6.72 -92.71 -0.62 7.14 16 31 H 0.18 1.27 6.37 -2.91 -0.02 1.25 16 32 H 0.19 0.78 8.06 -2.91 -0.02 0.76 16 33 H 0.45 -2.55 9.06 -74.05 -0.67 -3.22 16 34 H 0.13 3.97 7.64 -2.91 -0.02 3.94 16 35 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.03 1.52 7.37 -2.39 -0.02 1.50 16 Total: -1.00 -84.91 319.83 -2.66 -87.56 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -0.12 Total: 3.34 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 5.85 Total: 25.89 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -9.61 Total: -132.93 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.80 Total: -31.56 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -84.91 -2.66 -87.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030478302.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.038 kcal (2) G-P(sol) polarization free energy of solvation -84.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds