Wall clock time and date at job start Tue Mar 31 2020 04:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.47495 * 126.50681 * 2 1 4 4 C 1.54070 * 110.19838 * 209.00446 * 3 2 1 5 5 C 1.55603 * 104.29472 * 314.86169 * 4 3 2 6 6 H 1.08999 * 111.16686 * 280.05223 * 5 4 3 7 7 C 1.50704 * 111.20388 * 155.80133 * 5 4 3 8 8 O 1.21278 * 120.00055 * 337.18239 * 7 5 4 9 9 N 1.34778 * 120.00232 * 157.18562 * 7 5 4 10 10 C 1.46496 * 120.00193 * 180.02562 * 9 7 5 11 11 C 1.53952 * 113.73971 * 251.67410 * 10 9 7 12 12 N 1.47576 * 86.11439 * 222.04737 * 11 10 9 13 13 C 1.36942 * 134.49250 * 204.64420 * 12 11 10 14 14 H 1.07994 * 120.00278 * 180.02562 * 13 12 11 15 15 C 1.38812 * 119.99447 * 359.97438 * 13 12 11 16 16 N 1.31614 * 120.00660 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99540 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47131 * 60.00393 * 17 15 13 19 19 H 1.48506 * 109.46860 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47273 * 300.00094 * 17 15 13 21 21 C 1.47577 * 91.01850 * 24.63675 * 12 11 10 22 22 S 1.67005 * 126.30193 * 180.13533 * 2 1 3 23 23 O 1.42105 * 105.13204 * 61.03506 * 22 2 1 24 24 O 1.42096 * 105.13243 * 291.48572 * 22 2 1 25 25 H 1.08994 * 109.47121 * 269.86474 * 1 2 3 26 26 H 1.09006 * 109.46843 * 29.86312 * 1 2 3 27 27 H 1.08996 * 109.46883 * 149.86221 * 1 2 3 28 28 H 1.08998 * 109.26123 * 88.83146 * 3 2 1 29 29 H 1.09000 * 109.30594 * 329.20994 * 3 2 1 30 30 H 1.09000 * 110.46641 * 196.15631 * 4 3 2 31 31 H 1.09000 * 110.46601 * 73.56473 * 4 3 2 32 32 H 0.97004 * 119.99459 * 359.97438 * 9 7 5 33 33 H 1.08998 * 112.94335 * 23.40431 * 10 9 7 34 34 H 1.09000 * 113.76710 * 336.34496 * 11 10 9 35 35 H 1.09001 * 113.76869 * 107.74248 * 11 10 9 36 36 H 0.97002 * 120.00701 * 179.97438 * 16 15 13 37 37 H 1.08994 * 113.77639 * 221.05407 * 21 12 11 38 38 H 1.09008 * 113.86819 * 89.67545 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3425 1.1855 0.0000 4 6 3.6754 0.8608 -0.7011 5 6 4.0887 -0.5219 -0.1193 6 1 4.5459 -0.4143 0.8643 7 6 5.0037 -1.2590 -1.0630 8 8 5.0011 -0.9883 -2.2452 9 7 5.8248 -2.2190 -0.5933 10 6 6.7147 -2.9350 -1.5106 11 6 6.2954 -4.3937 -1.7685 12 7 7.7301 -4.7206 -1.6557 13 6 8.5241 -5.7317 -2.1275 14 1 9.5789 -5.7426 -1.8964 15 6 7.9726 -6.7432 -2.9019 16 7 6.6870 -6.7303 -3.1831 17 14 9.0555 -8.1228 -3.5448 18 1 9.6720 -8.8422 -2.4012 19 1 8.2318 -9.0692 -4.3395 20 1 10.1235 -7.5538 -4.4055 21 6 7.9656 -3.5200 -0.8303 22 16 2.4537 -1.3459 -0.0032 23 8 2.1380 -2.0353 -1.2050 24 8 2.2685 -1.9453 1.2718 25 1 -0.3633 -0.0024 1.0276 26 1 -0.3633 0.8913 -0.5117 27 1 -0.3633 -0.8887 -0.5160 28 1 2.5395 1.4870 1.0288 29 1 1.8466 2.0009 -0.5266 30 1 4.4255 1.6146 -0.4618 31 1 3.5322 0.7931 -1.7795 32 1 5.8271 -2.4352 0.3523 33 1 6.9316 -2.3720 -2.4183 34 1 5.6836 -4.8219 -0.9745 35 1 5.8831 -4.5630 -2.7632 36 1 6.3017 -7.4369 -3.7246 37 1 8.8869 -2.9918 -1.0759 38 1 7.8451 -3.6898 0.2397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031086587.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:50 Heat of formation + Delta-G solvation = -27.163061 kcal Electronic energy + Delta-G solvation = -23274.490228 eV Core-core repulsion = 19668.000762 eV Total energy + Delta-G solvation = -3606.489466 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -39.92175 -37.95121 -37.23376 -37.13325 -36.08627 -33.76607 -33.28347 -31.83571 -28.51856 -27.21027 -25.80593 -24.87346 -23.51044 -22.35413 -20.70955 -19.77261 -19.10500 -17.80380 -17.46202 -16.91441 -16.80555 -16.08259 -15.56364 -15.33692 -14.91203 -14.79740 -14.29828 -14.10730 -13.87433 -13.56797 -13.43447 -13.18913 -12.77049 -12.39454 -12.23887 -12.13852 -11.94991 -11.77211 -11.52865 -11.50006 -11.40023 -10.90319 -10.86520 -10.77917 -10.53236 -10.11894 -9.84545 -9.56679 -9.38134 -8.81939 -8.62621 -6.94658 -5.77504 -3.12807 -0.20408 2.18156 2.60901 2.98887 3.34956 3.40677 3.44101 3.46424 3.49826 4.07594 4.14261 4.42809 4.53076 4.55258 4.81040 4.83711 5.09931 5.17462 5.20228 5.28060 5.42361 5.44924 5.49630 5.51211 5.60436 5.93413 6.12468 6.15957 6.31840 6.46691 6.60694 7.20772 7.27140 7.50258 7.63599 7.95156 8.20340 9.01564 9.68034 10.53089 11.38907 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.003455 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.067298 B = 8103.165882 C = 8497.098036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.999 5.999 3 C 0.080 3.920 4 C -0.109 4.109 5 C -0.600 4.600 6 H 0.165 0.835 7 C 0.535 3.465 8 O -0.511 6.511 9 N -0.710 5.710 10 C 0.088 3.912 11 C 0.151 3.849 12 N -0.605 5.605 13 C -0.230 4.230 14 H 0.082 0.918 15 C -0.004 4.004 16 N -0.917 5.917 17 Si 0.916 3.084 18 H -0.285 1.285 19 H -0.289 1.289 20 H -0.283 1.283 21 C 0.113 3.887 22 S 2.587 3.413 23 O -0.928 6.928 24 O -0.946 6.946 25 H 0.056 0.944 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.399 0.601 33 H 0.116 0.884 34 H 0.031 0.969 35 H 0.081 0.919 36 H 0.257 0.743 37 H 0.051 0.949 38 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.050 19.494 9.902 24.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.843 5.843 3 C -0.046 4.046 4 C -0.148 4.148 5 C -0.711 4.711 6 H 0.183 0.817 7 C 0.316 3.684 8 O -0.386 6.386 9 N -0.361 5.361 10 C -0.016 4.016 11 C 0.024 3.976 12 N -0.332 5.332 13 C -0.358 4.358 14 H 0.100 0.900 15 C -0.202 4.202 16 N -0.563 5.563 17 Si 0.745 3.255 18 H -0.211 1.211 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.014 4.014 22 S 2.679 3.321 23 O -0.917 6.917 24 O -0.935 6.935 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.115 0.885 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.233 0.767 33 H 0.134 0.866 34 H 0.049 0.951 35 H 0.099 0.901 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -10.357 18.389 8.887 22.900 hybrid contribution 0.918 -0.290 0.376 1.033 sum -9.439 18.099 9.263 22.416 Atomic orbital electron populations 1.21253 0.75666 1.03302 1.01616 1.57262 1.13838 1.21363 1.91826 1.22206 0.89725 0.90771 1.01864 1.22680 0.96226 0.92844 1.03099 1.30995 1.20257 1.10853 1.09002 0.81686 1.18885 0.81282 0.80305 0.87884 1.90742 1.66916 1.65170 1.15751 1.46212 1.40291 1.37212 1.12402 1.24128 0.90295 0.93682 0.93488 1.22731 0.87219 0.86337 1.01282 1.45642 1.04959 1.25481 1.57069 1.18924 0.90684 0.99870 1.26286 0.90010 1.24840 0.96122 0.98822 1.00368 1.69812 1.10289 1.34545 1.41614 0.86157 0.79174 0.81566 0.78555 1.21115 1.21465 1.20968 1.22878 0.95287 0.88503 0.94730 1.06272 0.76818 0.73599 0.75403 1.93679 1.80530 1.70346 1.47164 1.93624 1.83481 1.73979 1.42389 0.92524 0.90745 0.91015 0.90504 0.88528 0.86666 0.87056 0.76673 0.86574 0.95143 0.90070 0.93316 0.93039 0.94577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 0.93 11.40 59.85 0.68 1.61 16 2 N -1.00 -9.40 3.73 -120.38 -0.45 -9.85 16 3 C 0.08 0.49 6.85 -2.94 -0.02 0.47 16 4 C -0.11 -0.83 6.11 -24.79 -0.15 -0.99 16 5 C -0.60 -6.17 3.71 -26.50 -0.10 -6.26 16 6 H 0.17 1.03 8.14 -51.93 -0.42 0.61 16 7 C 0.54 8.15 6.85 -10.98 -0.08 8.07 16 8 O -0.51 -9.67 15.44 5.56 0.09 -9.59 16 9 N -0.71 -10.90 5.36 -55.35 -0.30 -11.20 16 10 C 0.09 1.72 4.43 -70.15 -0.31 1.41 16 11 C 0.15 3.70 7.32 -2.97 -0.02 3.68 16 12 N -0.60 -15.64 3.70 -178.11 -0.66 -16.29 16 13 C -0.23 -6.50 10.70 -15.06 -0.16 -6.67 16 14 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 15 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 16 N -0.92 -27.85 11.38 55.49 0.63 -27.22 16 17 Si 0.92 22.33 29.55 -169.99 -5.02 17.31 16 18 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.11 2.23 8.69 -2.98 -0.03 2.20 16 22 S 2.59 33.72 5.82 -107.50 -0.63 33.10 16 23 O -0.93 -16.44 17.75 -57.43 -1.02 -17.46 16 24 O -0.95 -14.21 18.13 -57.43 -1.04 -15.25 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.11 1.07 7.27 -51.93 -0.38 0.69 16 32 H 0.40 4.81 8.73 -40.82 -0.36 4.46 16 33 H 0.12 2.40 7.46 -51.93 -0.39 2.02 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 2.26 7.15 -51.93 -0.37 1.89 16 36 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.04 0.65 8.12 -51.92 -0.42 0.23 16 LS Contribution 331.92 15.07 5.00 5.00 Total: -1.00 -38.87 331.92 -8.94 -47.81 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.27 Total: 0.33 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -0.28 Total: 3.32 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: -0.77 Total: -64.56 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: -1.97 Total: -42.30 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 33.72 SS G_CDS: -0.63 Total: 33.10 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.87 -8.94 -47.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031086587.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.647 kcal (2) G-P(sol) polarization free energy of solvation -38.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds