Wall clock time and date at job start Tue Mar 31 2020 04:21:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.47062 * 126.30400 * 2 1 4 4 C 1.54060 * 110.11350 * 150.93589 * 3 2 1 5 5 C 1.55599 * 104.29782 * 45.19812 * 4 3 2 6 6 H 1.09003 * 111.16534 * 79.99205 * 5 4 3 7 7 C 1.50700 * 111.16972 * 204.21938 * 5 4 3 8 8 O 1.21276 * 119.99960 * 35.00058 * 7 5 4 9 9 N 1.34781 * 120.00018 * 215.00037 * 7 5 4 10 10 C 1.46498 * 120.00002 * 179.97438 * 9 7 5 11 11 C 1.53949 * 113.74173 * 251.67489 * 10 9 7 12 12 N 1.47573 * 86.11727 * 222.04664 * 11 10 9 13 13 C 1.36934 * 134.49418 * 204.63828 * 12 11 10 14 14 H 1.08001 * 120.00214 * 179.97438 * 13 12 11 15 15 C 1.38816 * 119.99966 * 0.02562 * 13 12 11 16 16 N 1.31613 * 119.99659 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00016 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47128 * 89.99996 * 17 15 13 19 19 H 1.48501 * 109.46837 * 210.00265 * 17 15 13 20 20 H 1.48497 * 109.46883 * 329.99885 * 17 15 13 21 21 C 1.47583 * 91.01675 * 24.64206 * 12 11 10 22 22 S 1.67008 * 126.30116 * 179.97438 * 2 1 3 23 23 O 1.42101 * 105.13489 * 68.63982 * 22 2 1 24 24 O 1.42098 * 105.13379 * 298.96129 * 22 2 1 25 25 H 1.08990 * 109.47044 * 0.02658 * 1 2 3 26 26 H 1.08996 * 109.47138 * 120.03113 * 1 2 3 27 27 H 1.09007 * 109.46776 * 240.02385 * 1 2 3 28 28 H 1.09005 * 109.35736 * 30.75212 * 3 2 1 29 29 H 1.09005 * 109.30105 * 271.07726 * 3 2 1 30 30 H 1.09006 * 110.46684 * 286.49516 * 4 3 2 31 31 H 1.08997 * 110.57839 * 163.96179 * 4 3 2 32 32 H 0.97003 * 119.99558 * 359.97438 * 9 7 5 33 33 H 1.08999 * 113.01965 * 23.33725 * 10 9 7 34 34 H 1.09003 * 113.76687 * 336.35019 * 11 10 9 35 35 H 1.09004 * 113.76847 * 107.74157 * 11 10 9 36 36 H 0.97004 * 119.99761 * 179.97438 * 16 15 13 37 37 H 1.08996 * 113.77114 * 221.06092 * 21 12 11 38 38 H 1.09000 * 113.77347 * 89.66012 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.3357 1.1852 0.0000 4 6 3.6684 0.8634 0.7028 5 6 4.0863 -0.5176 0.1204 6 1 4.5454 -0.4078 -0.8621 7 6 5.0015 -1.2524 1.0657 8 8 4.8467 -1.1474 2.2639 9 7 5.9920 -2.0264 0.5794 10 6 6.8820 -2.7403 1.4984 11 6 8.3071 -2.1608 1.5564 12 7 8.7692 -3.5624 1.5515 13 6 9.8982 -4.2021 1.9886 14 1 9.9962 -5.2704 1.8636 15 6 10.9164 -3.4778 2.5932 16 7 10.7967 -2.1760 2.7459 17 14 12.4563 -4.3506 3.1901 18 1 13.4629 -4.3803 2.0989 19 1 13.0148 -3.6250 4.3592 20 1 12.1152 -5.7404 3.5869 21 6 7.5258 -3.9976 0.8862 22 16 2.4537 -1.3459 0.0006 23 8 2.2707 -1.9413 -1.2766 24 8 2.1381 -2.0376 1.2011 25 1 -0.3633 1.0276 -0.0005 26 1 -0.3633 -0.5143 -0.8897 27 1 -0.3633 -0.5135 0.8903 28 1 1.8373 1.9996 0.5259 29 1 2.5334 1.4870 -1.0286 30 1 3.5238 0.7945 1.7810 31 1 4.4178 1.6190 0.4673 32 1 6.1155 -2.1107 -0.3790 33 1 6.4364 -2.9085 2.4788 34 1 8.5906 -1.6016 0.6648 35 1 8.5276 -1.6287 2.4819 36 1 11.5081 -1.6699 3.1688 37 1 7.1225 -4.9319 1.2765 38 1 7.5798 -3.9779 -0.2023 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031086588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:56 Heat of formation + Delta-G solvation = -28.209373 kcal Electronic energy + Delta-G solvation = -23124.610098 eV Core-core repulsion = 19518.075260 eV Total energy + Delta-G solvation = -3606.534838 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 5.37 seconds Orbital eigenvalues (eV) -39.92179 -37.97277 -37.29991 -37.17325 -36.13759 -33.76205 -33.29560 -31.85627 -28.52747 -27.23261 -25.82644 -24.89541 -23.51713 -22.41458 -20.71098 -19.81171 -19.11101 -17.84307 -17.41905 -16.91417 -16.84115 -16.10184 -15.58750 -15.38250 -14.95593 -14.80406 -14.21320 -14.16912 -13.89341 -13.63474 -13.46368 -13.22920 -12.75062 -12.41954 -12.30086 -12.19536 -11.95843 -11.79798 -11.55523 -11.51758 -11.44852 -10.94039 -10.89033 -10.79005 -10.53152 -10.12897 -9.84517 -9.59874 -9.38923 -8.85466 -8.62389 -6.97660 -5.82058 -3.16134 -0.22771 2.15112 2.57333 2.99533 3.32881 3.37624 3.42307 3.44577 3.52290 4.07294 4.12713 4.40097 4.51349 4.55109 4.79377 4.82502 5.08813 5.16174 5.20348 5.27893 5.39081 5.42507 5.48319 5.49324 5.60322 5.93430 6.12263 6.14164 6.31874 6.47270 6.58898 7.16089 7.24647 7.47078 7.62609 7.91659 8.21606 8.98425 9.64499 10.49821 11.34744 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.041808 B = 0.003114 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.574052 B = 8989.602782 C = 9293.213493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.999 5.999 3 C 0.081 3.919 4 C -0.110 4.110 5 C -0.598 4.598 6 H 0.163 0.837 7 C 0.533 3.467 8 O -0.509 6.509 9 N -0.707 5.707 10 C 0.087 3.913 11 C 0.155 3.845 12 N -0.605 5.605 13 C -0.226 4.226 14 H 0.083 0.917 15 C -0.006 4.006 16 N -0.919 5.919 17 Si 0.916 3.084 18 H -0.288 1.288 19 H -0.289 1.289 20 H -0.279 1.279 21 C 0.111 3.889 22 S 2.591 3.409 23 O -0.948 6.948 24 O -0.931 6.931 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.096 0.904 29 H 0.077 0.923 30 H 0.110 0.890 31 H 0.117 0.883 32 H 0.400 0.600 33 H 0.117 0.883 34 H 0.030 0.970 35 H 0.079 0.921 36 H 0.255 0.745 37 H 0.053 0.947 38 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.369 9.276 -9.010 23.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.842 5.842 3 C -0.045 4.045 4 C -0.150 4.150 5 C -0.709 4.709 6 H 0.181 0.819 7 C 0.314 3.686 8 O -0.384 6.384 9 N -0.358 5.358 10 C -0.018 4.018 11 C 0.028 3.972 12 N -0.332 5.332 13 C -0.354 4.354 14 H 0.101 0.899 15 C -0.203 4.203 16 N -0.565 5.565 17 Si 0.746 3.254 18 H -0.216 1.216 19 H -0.215 1.215 20 H -0.205 1.205 21 C -0.016 4.016 22 S 2.683 3.317 23 O -0.938 6.938 24 O -0.920 6.920 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.234 0.766 33 H 0.135 0.865 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -19.523 8.338 -8.012 22.690 hybrid contribution 1.474 0.333 -0.431 1.571 sum -18.049 8.670 -8.443 21.731 Atomic orbital electron populations 1.21283 0.75740 1.03504 1.01606 1.57136 1.13850 1.21355 1.91867 1.22137 0.89802 0.90682 1.01850 1.22702 0.96334 0.92939 1.03003 1.31000 1.19984 1.10962 1.08979 0.81885 1.18907 0.81527 0.80003 0.88158 1.90774 1.70783 1.62176 1.14675 1.46184 1.31286 1.47517 1.10842 1.24133 0.89859 0.93717 0.94049 1.22682 0.85439 0.88449 1.00591 1.45646 1.16634 1.03883 1.67043 1.18995 0.92563 0.91678 1.32118 0.89933 1.24826 0.98633 0.95736 1.01094 1.69821 1.33557 1.05193 1.47971 0.86067 0.82761 0.78525 0.78078 1.21555 1.21541 1.20494 1.22915 0.87358 0.95471 0.95893 1.06101 0.76773 0.73567 0.75210 1.93621 1.83635 1.74269 1.42227 1.93657 1.80594 1.70481 1.47255 0.90108 0.92059 0.91892 0.88516 0.90507 0.87135 0.86512 0.76615 0.86539 0.95270 0.90288 0.93498 0.92876 0.94463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 0.83 11.40 59.85 0.68 1.52 16 2 N -1.00 -8.87 3.72 -120.71 -0.45 -9.32 16 3 C 0.08 0.49 6.81 -3.18 -0.02 0.47 16 4 C -0.11 -0.86 6.19 -24.79 -0.15 -1.02 16 5 C -0.60 -6.08 3.71 -26.50 -0.10 -6.18 16 6 H 0.16 1.05 8.11 -51.93 -0.42 0.62 16 7 C 0.53 8.06 6.73 -10.98 -0.07 7.98 16 8 O -0.51 -9.71 15.68 5.56 0.09 -9.63 16 9 N -0.71 -10.66 5.36 -55.34 -0.30 -10.96 16 10 C 0.09 1.68 4.43 -70.15 -0.31 1.36 16 11 C 0.15 3.63 7.32 -2.98 -0.02 3.61 16 12 N -0.61 -15.42 3.70 -178.10 -0.66 -16.08 16 13 C -0.23 -6.32 10.70 -15.06 -0.16 -6.48 16 14 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 15 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 16 N -0.92 -27.20 11.38 55.49 0.63 -26.56 16 17 Si 0.92 22.06 29.55 -169.99 -5.02 17.04 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 C 0.11 2.20 8.69 -2.97 -0.03 2.17 16 22 S 2.59 31.51 5.84 -107.50 -0.63 30.88 16 23 O -0.95 -13.33 18.14 -57.41 -1.04 -14.37 16 24 O -0.93 -15.24 17.75 -57.41 -1.02 -16.25 16 25 H 0.08 0.33 8.11 -51.93 -0.42 -0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.11 1.07 7.35 -51.93 -0.38 0.69 16 31 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.40 4.65 8.71 -40.82 -0.36 4.30 16 33 H 0.12 2.45 7.46 -51.93 -0.39 2.06 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.08 2.10 7.15 -51.93 -0.37 1.73 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.04 0.67 8.12 -51.93 -0.42 0.25 16 LS Contribution 332.07 15.07 5.00 5.00 Total: -1.00 -38.18 332.07 -8.94 -47.11 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -5.27 Total: -0.04 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -0.28 Total: 3.17 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.77 Total: -62.91 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -1.97 Total: -40.25 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 31.51 SS G_CDS: -0.63 Total: 30.88 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.18 -8.94 -47.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031086588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.905 kcal (2) G-P(sol) polarization free energy of solvation -38.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.37 seconds