Wall clock time and date at job start Tue Mar 31 2020 03:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99700 * 2 1 4 4 H 1.48503 * 109.46911 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47055 * 299.99468 * 3 2 1 6 6 H 1.48499 * 109.47177 * 59.99650 * 3 2 1 7 7 C 1.38811 * 120.00175 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99922 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.47580 * 134.49624 * 179.97438 * 9 7 2 11 11 C 1.53946 * 86.24073 * 155.42671 * 10 9 7 12 12 C 1.52999 * 113.74489 * 269.09770 * 11 10 9 13 13 N 1.46501 * 109.47283 * 185.00025 * 12 11 10 14 14 C 1.34768 * 119.99903 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99962 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99982 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.76232 * 319.30228 * 16 14 13 18 18 C 1.54107 * 109.76242 * 80.02882 * 16 14 13 19 19 C 1.54920 * 105.90038 * 165.31589 * 18 16 14 20 20 S 1.83176 * 102.70742 * 334.82756 * 19 18 16 21 21 O 1.42105 * 111.27497 * 111.03378 * 20 19 18 22 22 O 1.42100 * 111.27864 * 250.37888 * 20 19 18 23 23 N 1.47989 * 109.76489 * 198.57649 * 16 14 13 24 24 C 1.47812 * 134.58000 * 359.95564 * 9 7 2 25 25 H 0.97002 * 120.00623 * 0.02562 * 1 2 3 26 26 H 1.09002 * 113.76914 * 41.06982 * 10 9 7 27 27 H 1.09000 * 113.77064 * 269.78454 * 10 9 7 28 28 H 1.09002 * 113.73634 * 137.89643 * 11 10 9 29 29 H 1.09005 * 109.46822 * 305.00411 * 12 11 10 30 30 H 1.09005 * 109.47016 * 64.99837 * 12 11 10 31 31 H 0.97000 * 119.99730 * 0.02562 * 13 12 11 32 32 H 1.09006 * 110.16647 * 284.41497 * 18 16 14 33 33 H 1.08994 * 110.17377 * 46.13268 * 18 16 14 34 34 H 1.08999 * 110.76665 * 93.13068 * 19 18 16 35 35 H 1.09002 * 110.76483 * 216.34207 * 19 18 16 36 36 H 0.97004 * 127.76541 * 16.20155 * 23 16 14 37 37 H 1.08996 * 113.67199 * 90.26493 * 24 9 7 38 38 H 1.08996 * 113.93703 * 318.91143 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3257 -2.3881 0.0005 10 6 1.7203 -3.8101 0.0005 11 6 0.3471 -4.0864 0.6394 12 6 0.3634 -4.0628 2.1691 13 7 -0.9543 -4.4523 2.6775 14 6 -1.1758 -4.5031 4.0059 15 8 -0.2846 -4.2260 4.7804 16 6 -2.5314 -4.9031 4.5289 17 1 -3.3111 -4.4456 3.9200 18 6 -2.6729 -6.4372 4.4903 19 6 -3.9005 -6.7726 5.3737 20 16 -3.9776 -5.3428 6.5160 21 8 -5.1159 -4.5337 6.2533 22 8 -3.6145 -5.7183 7.8375 23 7 -2.6739 -4.4662 5.9356 24 6 -0.1048 -2.7603 0.0009 25 1 -0.4851 0.8400 -0.0004 26 1 2.5624 -4.0324 0.6559 27 1 1.8341 -4.2345 -0.9970 28 1 -0.1573 -4.9632 0.2332 29 1 1.1153 -4.7619 2.5352 30 1 0.6034 -3.0572 2.5144 31 1 -1.6669 -4.6742 2.0580 32 1 -2.8431 -6.7733 3.4674 33 1 -1.7771 -6.9076 4.8957 34 1 -4.8059 -6.8341 4.7699 35 1 -3.7399 -7.7008 5.9222 36 1 -2.1335 -3.8181 6.4141 37 1 -0.5274 -2.8748 -0.9973 38 1 -0.7217 -2.1451 0.6559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032192552.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:49 Heat of formation + Delta-G solvation = -74.367858 kcal Electronic energy + Delta-G solvation = -22797.896642 eV Core-core repulsion = 19189.360222 eV Total energy + Delta-G solvation = -3608.536420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 2.20 seconds Orbital eigenvalues (eV) -41.13887 -39.74129 -38.16881 -37.42516 -36.92161 -35.71128 -34.15973 -32.58400 -30.60118 -28.67861 -26.79632 -26.44187 -24.25500 -23.48009 -21.63666 -20.72031 -20.23231 -18.99231 -18.68688 -18.12354 -17.42557 -17.12904 -16.94738 -16.59030 -16.43714 -15.98736 -15.66008 -15.49070 -14.95641 -14.54001 -14.45377 -14.22171 -13.97398 -13.46808 -13.32744 -13.24581 -13.08863 -12.97605 -12.92733 -12.80199 -12.51267 -12.28331 -12.22049 -11.80932 -11.53942 -11.46350 -11.27435 -11.02107 -10.84942 -10.56061 -10.06113 -8.86760 -7.90140 -5.20444 -0.72135 1.40161 1.43174 1.44455 1.53608 1.64738 2.12796 2.47528 2.69827 3.03085 3.32135 3.39306 3.45100 3.51563 3.72702 3.82379 3.93478 4.01450 4.22355 4.33410 4.56998 4.65985 4.75927 4.82196 4.89421 4.94565 4.96044 5.05152 5.13445 5.29039 5.41448 5.59736 5.68442 5.98857 6.03590 6.57303 6.95521 7.22271 7.63894 8.59622 9.26736 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.023663 B = 0.003133 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.974472 B = 8933.664307 C = 9513.836635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.067 4.067 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.297 1.297 7 C -0.229 4.229 8 H 0.079 0.921 9 N -0.646 5.646 10 C 0.123 3.877 11 C -0.116 4.116 12 C 0.158 3.842 13 N -0.703 5.703 14 C 0.518 3.482 15 O -0.576 6.576 16 C 0.081 3.919 17 H 0.140 0.860 18 C -0.113 4.113 19 C -0.555 4.555 20 S 2.570 3.430 21 O -0.993 6.993 22 O -1.005 7.005 23 N -1.096 6.096 24 C 0.159 3.841 25 H 0.246 0.754 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.123 0.877 29 H 0.073 0.927 30 H 0.028 0.972 31 H 0.421 0.579 32 H 0.157 0.843 33 H 0.098 0.902 34 H 0.181 0.819 35 H 0.172 0.828 36 H 0.434 0.566 37 H 0.024 0.976 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.738 -20.421 5.494 23.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.600 5.600 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.224 1.224 7 C -0.358 4.358 8 H 0.097 0.903 9 N -0.373 5.373 10 C -0.002 4.002 11 C -0.135 4.135 12 C 0.034 3.966 13 N -0.355 5.355 14 C 0.302 3.698 15 O -0.455 6.455 16 C -0.031 4.031 17 H 0.158 0.842 18 C -0.153 4.153 19 C -0.690 4.690 20 S 2.669 3.331 21 O -0.982 6.982 22 O -0.995 6.995 23 N -0.862 5.862 24 C 0.034 3.966 25 H 0.055 0.945 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.258 0.742 32 H 0.175 0.825 33 H 0.117 0.883 34 H 0.199 0.801 35 H 0.190 0.810 36 H 0.274 0.726 37 H 0.041 0.959 38 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.697 -19.653 6.821 22.952 hybrid contribution 0.866 1.714 -0.617 2.017 sum -8.831 -17.939 6.204 20.935 Atomic orbital electron populations 1.69969 1.06160 1.25206 1.58689 1.25496 0.96520 1.00470 1.03477 0.85141 0.78338 0.80112 0.76582 1.19109 1.21843 1.22422 1.19417 0.90729 0.83772 1.41873 0.90330 1.46468 1.03961 1.00620 1.86294 1.22784 0.95832 0.83454 0.98149 1.23127 0.98250 0.98843 0.93310 1.20778 0.84421 0.98863 0.92572 1.45813 1.15000 1.68133 1.06580 1.20572 0.89707 0.77029 0.82469 1.90727 1.46785 1.50420 1.57567 1.22370 0.96935 0.98409 0.85376 0.84248 1.22604 0.97691 0.89342 1.05655 1.30551 1.08227 1.16490 1.13729 1.06231 0.72964 0.78665 0.75196 1.93616 1.50811 1.67522 1.86278 1.93553 1.82800 1.84313 1.38857 1.55446 1.52951 1.58579 1.19187 1.22342 0.86863 0.91043 0.96362 0.94517 0.92962 0.92378 0.85940 0.90887 0.95309 0.74156 0.82509 0.88317 0.80088 0.80968 0.72578 0.95865 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 60. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.01 11.40 21.65 0.25 -56.77 16 2 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 7 C -0.23 -12.78 10.70 84.03 0.90 -11.88 16 8 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 9 N -0.65 -31.54 3.61 -713.60 -2.57 -34.11 16 10 C 0.12 4.35 8.50 86.48 0.74 5.08 16 11 C -0.12 -3.41 3.99 -10.13 -0.04 -3.45 16 12 C 0.16 4.79 5.44 86.38 0.47 5.26 16 13 N -0.70 -15.45 5.56 -463.05 -2.57 -18.02 16 14 C 0.52 12.59 7.09 87.66 0.62 13.21 16 15 O -0.58 -20.06 16.28 -3.05 -0.05 -20.11 16 16 C 0.08 1.22 3.29 44.33 0.15 1.37 16 17 H 0.14 1.39 8.14 -2.39 -0.02 1.38 16 18 C -0.11 -0.65 6.12 31.63 0.19 -0.45 16 19 C -0.55 -2.09 7.49 72.64 0.54 -1.55 16 20 S 2.57 43.92 6.40 -56.49 -0.36 43.56 16 21 O -0.99 -24.22 18.14 -127.78 -2.32 -26.54 16 22 O -1.01 -25.84 18.14 -127.78 -2.32 -28.16 16 23 N -1.10 -22.04 6.62 -168.25 -1.11 -23.16 16 24 C 0.16 6.79 7.02 86.44 0.61 7.39 16 25 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 26 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 30 H 0.03 1.21 7.98 -2.38 -0.02 1.19 16 31 H 0.42 5.78 8.47 -92.71 -0.79 4.99 16 32 H 0.16 -0.30 8.14 -2.38 -0.02 -0.32 16 33 H 0.10 0.70 8.10 -2.39 -0.02 0.68 16 34 H 0.18 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.17 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.43 10.21 8.53 -92.75 -0.79 9.42 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.04 2.00 7.14 -2.39 -0.02 1.98 16 Total: -1.00 -90.80 331.76 -4.87 -95.67 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -0.48 Total: 7.53 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 4.64 Total: 11.62 kcal Atomic # 7 Polarization: -126.04 SS G_CDS: -6.01 Total: -132.06 kcal Atomic # 8 Polarization: -70.12 SS G_CDS: -4.68 Total: -74.80 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 43.92 SS G_CDS: -0.36 Total: 43.56 kcal Total: -90.80 -4.87 -95.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032192552.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.305 kcal (2) G-P(sol) polarization free energy of solvation -90.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.20 seconds