Wall clock time and date at job start Tue Mar 31 2020 03:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47112 * 299.99780 * 3 2 1 6 6 H 1.48497 * 109.47211 * 60.00521 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11565 * 155.35638 * 10 9 7 12 12 C 1.52995 * 113.74136 * 269.25964 * 11 10 9 13 13 N 1.46503 * 109.47105 * 185.00125 * 12 11 10 14 14 C 1.34773 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99919 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00318 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.34452 * 40.70059 * 16 14 13 18 18 C 1.54060 * 109.35337 * 280.98914 * 16 14 13 19 19 C 1.55611 * 104.29585 * 194.61626 * 18 16 14 20 20 S 1.83459 * 100.71834 * 37.91799 * 19 18 16 21 21 O 1.42098 * 111.24523 * 89.27604 * 20 19 18 22 22 O 1.42104 * 111.24484 * 228.52466 * 20 19 18 23 23 N 1.47058 * 109.35563 * 160.41704 * 16 14 13 24 24 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 25 25 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.76908 * 41.05558 * 10 9 7 27 27 H 1.08997 * 113.76763 * 269.65820 * 10 9 7 28 28 H 1.08997 * 113.73645 * 137.95305 * 11 10 9 29 29 H 1.08999 * 109.47454 * 305.00427 * 12 11 10 30 30 H 1.09005 * 109.47269 * 65.00311 * 12 11 10 31 31 H 0.97000 * 119.99889 * 0.02562 * 13 12 11 32 32 H 1.08997 * 110.47024 * 313.32055 * 18 16 14 33 33 H 1.08998 * 110.47445 * 75.78770 * 18 16 14 34 34 H 1.09001 * 111.16901 * 155.77947 * 19 18 16 35 35 H 1.08997 * 111.16652 * 280.01098 * 19 18 16 36 36 H 0.96999 * 126.30398 * 329.16901 * 23 16 14 37 37 H 1.09003 * 113.77250 * 90.33928 * 24 9 7 38 38 H 1.08995 * 113.76824 * 318.94287 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.7202 -3.8101 -0.0029 11 6 0.3472 -4.0835 0.6373 12 6 0.3642 -4.0556 2.1669 13 7 -0.9535 -4.4426 2.6771 14 6 -1.1749 -4.4885 4.0057 15 8 -0.2834 -4.2090 4.7790 16 6 -2.5305 -4.8861 4.5305 17 1 -2.9202 -5.7118 3.9353 18 6 -3.4901 -3.6851 4.4277 19 6 -4.6989 -4.0814 5.3238 20 16 -3.8378 -4.9352 6.7005 21 8 -3.4777 -4.0219 7.7278 22 8 -4.4453 -6.1866 6.9906 23 7 -2.4047 -5.3124 5.9323 24 6 -0.1032 -2.7574 -0.0019 25 1 -0.4850 0.8400 0.0004 26 1 2.5626 -4.0329 0.6521 27 1 1.8320 -4.2341 -1.0008 28 1 -0.1589 -4.9599 0.2326 29 1 1.1157 -4.7541 2.5348 30 1 0.6051 -3.0492 2.5093 31 1 -1.6666 -4.6658 2.0586 32 1 -3.0129 -2.7823 4.8087 33 1 -3.8097 -3.5397 3.3958 34 1 -5.2312 -3.1991 5.6795 35 1 -5.3722 -4.7592 4.7993 36 1 -1.6315 -5.7364 6.3364 37 1 -0.5271 -2.8722 -0.9996 38 1 -0.7168 -2.1397 0.6538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032192553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:59 Heat of formation + Delta-G solvation = -40.404305 kcal Electronic energy + Delta-G solvation = -22886.918452 eV Core-core repulsion = 19279.854802 eV Total energy + Delta-G solvation = -3607.063650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.09975 -38.26329 -37.28811 -36.65155 -36.08815 -34.43162 -32.22905 -32.03497 -29.08871 -27.38653 -25.48694 -24.85876 -23.12387 -22.26904 -20.58131 -19.85642 -18.96952 -17.98089 -17.54924 -16.86511 -16.55270 -16.03547 -15.84227 -15.24066 -15.09327 -14.82541 -14.59377 -14.07327 -13.77632 -13.71122 -13.33819 -13.01736 -12.64437 -12.38588 -12.34533 -12.22931 -12.19431 -11.86168 -11.53099 -11.18769 -11.06747 -10.91317 -10.77609 -10.54534 -10.21165 -9.94649 -9.81881 -9.59898 -9.47607 -8.86318 -8.84455 -6.92415 -5.81191 -3.12854 -0.06075 2.21491 2.54441 3.13447 3.30323 3.37178 3.43179 3.45066 3.64199 3.96117 4.11914 4.42205 4.43898 4.56372 4.84768 4.94617 5.09749 5.13779 5.24818 5.26482 5.34192 5.43869 5.54014 5.89887 6.04047 6.26263 6.43224 6.50845 6.56925 6.68627 6.81361 7.11807 7.23880 7.51065 7.55592 7.94484 8.21468 9.01363 9.67531 10.55119 11.36054 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003256 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.000407 B = 8597.046751 C = 9164.336725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.611 5.611 10 C 0.126 3.874 11 C -0.156 4.156 12 C 0.147 3.853 13 N -0.717 5.717 14 C 0.510 3.490 15 O -0.524 6.524 16 C 0.096 3.904 17 H 0.107 0.893 18 C -0.121 4.121 19 C -0.594 4.594 20 S 2.579 3.421 21 O -0.954 6.954 22 O -0.959 6.959 23 N -1.083 6.083 24 C 0.165 3.835 25 H 0.252 0.748 26 H 0.046 0.954 27 H 0.037 0.963 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.084 0.916 31 H 0.400 0.600 32 H 0.105 0.895 33 H 0.123 0.877 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.439 0.561 37 H 0.026 0.974 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.235 -12.351 6.357 17.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.337 5.337 10 C 0.000 4.000 11 C -0.176 4.176 12 C 0.025 3.975 13 N -0.368 5.368 14 C 0.292 3.708 15 O -0.399 6.399 16 C -0.016 4.016 17 H 0.125 0.875 18 C -0.161 4.161 19 C -0.725 4.725 20 S 2.673 3.327 21 O -0.943 6.943 22 O -0.948 6.948 23 N -0.850 5.850 24 C 0.040 3.960 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.055 0.945 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.234 0.766 32 H 0.123 0.877 33 H 0.141 0.859 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.280 0.720 37 H 0.044 0.956 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.846 -11.972 7.871 17.970 hybrid contribution 0.474 0.923 -1.163 1.558 sum -10.372 -11.049 6.708 16.573 Atomic orbital electron populations 1.69801 1.05003 1.25175 1.56973 1.24745 0.95668 0.97472 1.02450 0.86074 0.78836 0.83778 0.77250 1.20452 1.21792 1.21669 1.19079 0.90344 0.82038 1.43513 0.90238 1.46014 1.02274 0.99284 1.86168 1.22529 0.94116 0.86654 0.96717 1.23457 1.00348 0.99901 0.93878 1.21137 0.82266 1.01552 0.92582 1.46037 1.15555 1.68957 1.06230 1.20195 0.89213 0.78466 0.82888 1.90753 1.44956 1.47789 1.56406 1.21636 0.95935 0.98381 0.85659 0.87533 1.22664 0.91397 0.97931 1.04063 1.30845 1.08683 1.14985 1.17987 1.06100 0.75463 0.75716 0.75376 1.93648 1.80990 1.65610 1.54061 1.93634 1.76491 1.41426 1.83245 1.54962 1.34411 1.77807 1.17862 1.22326 0.88436 0.88553 0.96697 0.93772 0.93628 0.94503 0.91450 0.92072 0.89727 0.76610 0.87685 0.85907 0.83549 0.83647 0.71994 0.95608 0.90661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.40 11.38 55.49 0.63 -25.77 16 2 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 21.93 29.55 -169.99 -5.02 16.91 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.22 -6.08 10.70 -15.06 -0.16 -6.24 16 8 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 9 N -0.61 -14.82 3.59 -177.91 -0.64 -15.46 16 10 C 0.13 2.38 8.51 -2.97 -0.03 2.36 16 11 C -0.16 -2.52 4.00 -89.69 -0.36 -2.88 16 12 C 0.15 2.34 5.43 -4.04 -0.02 2.32 16 13 N -0.72 -8.69 5.56 -60.29 -0.33 -9.03 16 14 C 0.51 6.57 7.05 -10.99 -0.08 6.50 16 15 O -0.52 -9.19 16.40 5.56 0.09 -9.10 16 16 C 0.10 0.82 3.41 -68.22 -0.23 0.59 16 17 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16 18 C -0.12 -0.83 6.09 -24.79 -0.15 -0.99 16 19 C -0.59 -3.10 7.51 38.55 0.29 -2.81 16 20 S 2.58 24.01 6.49 -107.50 -0.70 23.32 16 21 O -0.95 -12.98 18.13 -57.41 -1.04 -14.02 16 22 O -0.96 -11.52 18.14 -57.41 -1.04 -12.56 16 23 N -1.08 -10.52 6.30 -5.09 -0.03 -10.55 16 24 C 0.17 3.51 7.01 -2.98 -0.02 3.49 16 25 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 26 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.08 1.73 7.97 -51.93 -0.41 1.31 16 31 H 0.40 3.49 8.47 -40.82 -0.35 3.15 16 32 H 0.10 0.90 8.10 -51.93 -0.42 0.48 16 33 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.15 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.15 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.44 4.33 8.74 -40.30 -0.35 3.98 16 37 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.77 7.11 -51.93 -0.37 1.40 16 LS Contribution 331.86 15.07 5.00 5.00 Total: -1.00 -38.60 331.86 -9.19 -47.79 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.25 Total: 1.42 kcal Atomic # 6 Polarization: 2.92 SS G_CDS: -0.86 Total: 2.06 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -0.37 Total: -60.81 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -1.99 Total: -35.69 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 24.01 SS G_CDS: -0.70 Total: 23.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.60 -9.19 -47.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032192553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.386 kcal (2) G-P(sol) polarization free energy of solvation -38.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds