Wall clock time and date at job start Tue Mar 31 2020 03:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86802 * 119.99645 * 2 1 4 4 H 1.48505 * 109.46831 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47112 * 299.99780 * 3 2 1 6 6 H 1.48497 * 109.47211 * 60.00521 * 3 2 1 7 7 C 1.38813 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99934 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.47584 * 134.49069 * 179.97438 * 9 7 2 11 11 C 1.53947 * 86.11565 * 155.35638 * 10 9 7 12 12 C 1.52995 * 113.74136 * 269.25964 * 11 10 9 13 13 N 1.46503 * 109.47105 * 185.00125 * 12 11 10 14 14 C 1.34773 * 120.00270 * 180.02562 * 13 12 11 15 15 O 1.21283 * 119.99919 * 0.02562 * 14 13 12 16 16 C 1.50702 * 120.00318 * 179.97438 * 14 13 12 17 17 H 1.08996 * 109.34452 * 40.70059 * 16 14 13 18 18 C 1.54060 * 109.35337 * 280.98914 * 16 14 13 19 19 C 1.55611 * 104.29585 * 194.61626 * 18 16 14 20 20 S 1.83459 * 100.71834 * 37.91799 * 19 18 16 21 21 O 1.42098 * 111.24523 * 89.27604 * 20 19 18 22 22 O 1.42104 * 111.24484 * 228.52466 * 20 19 18 23 23 N 1.47058 * 109.35563 * 160.41704 * 16 14 13 24 24 C 1.47576 * 134.49433 * 359.97438 * 9 7 2 25 25 H 0.96998 * 120.00287 * 359.97438 * 1 2 3 26 26 H 1.09001 * 113.76908 * 41.05558 * 10 9 7 27 27 H 1.08997 * 113.76763 * 269.65820 * 10 9 7 28 28 H 1.08997 * 113.73645 * 137.95305 * 11 10 9 29 29 H 1.08999 * 109.47454 * 305.00427 * 12 11 10 30 30 H 1.09005 * 109.47269 * 65.00311 * 12 11 10 31 31 H 0.97000 * 119.99889 * 0.02562 * 13 12 11 32 32 H 1.08997 * 110.47024 * 313.32055 * 18 16 14 33 33 H 1.08998 * 110.47445 * 75.78770 * 18 16 14 34 34 H 1.09001 * 111.16901 * 155.77947 * 19 18 16 35 35 H 1.08997 * 111.16652 * 280.01098 * 19 18 16 36 36 H 0.96999 * 126.30398 * 329.16901 * 23 16 14 37 37 H 1.09003 * 113.77250 * 90.33928 * 24 9 7 38 38 H 1.08995 * 113.76824 * 318.94287 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2500 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 1.7202 -3.8101 -0.0029 11 6 0.3472 -4.0835 0.6373 12 6 0.3642 -4.0556 2.1669 13 7 -0.9535 -4.4426 2.6771 14 6 -1.1749 -4.4885 4.0057 15 8 -0.2834 -4.2090 4.7790 16 6 -2.5305 -4.8861 4.5305 17 1 -2.9202 -5.7118 3.9353 18 6 -3.4901 -3.6851 4.4277 19 6 -4.6989 -4.0814 5.3238 20 16 -3.8378 -4.9352 6.7005 21 8 -3.4777 -4.0219 7.7278 22 8 -4.4453 -6.1866 6.9906 23 7 -2.4047 -5.3124 5.9323 24 6 -0.1032 -2.7574 -0.0019 25 1 -0.4850 0.8400 0.0004 26 1 2.5626 -4.0329 0.6521 27 1 1.8320 -4.2341 -1.0008 28 1 -0.1589 -4.9599 0.2326 29 1 1.1157 -4.7541 2.5348 30 1 0.6051 -3.0492 2.5093 31 1 -1.6666 -4.6658 2.0586 32 1 -3.0129 -2.7823 4.8087 33 1 -3.8097 -3.5397 3.3958 34 1 -5.2312 -3.1991 5.6795 35 1 -5.3722 -4.7592 4.7993 36 1 -1.6315 -5.7364 6.3364 37 1 -0.5271 -2.8722 -0.9996 38 1 -0.7168 -2.1397 0.6538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032192553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:58 Heat of formation + Delta-G solvation = -74.784388 kcal Electronic energy + Delta-G solvation = -22888.409284 eV Core-core repulsion = 19279.854802 eV Total energy + Delta-G solvation = -3608.554482 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.14422 -39.76013 -38.12311 -37.48526 -36.91870 -35.69860 -34.14887 -32.67917 -30.58653 -28.66270 -26.77567 -26.44426 -24.25538 -23.53281 -21.59944 -20.64552 -20.28504 -18.97035 -18.67924 -18.27216 -17.51693 -17.10832 -16.92241 -16.67911 -16.17620 -16.03174 -15.62866 -15.60776 -14.91085 -14.48915 -14.44948 -14.18916 -14.05725 -13.41748 -13.33208 -13.24933 -13.07485 -12.98184 -12.92712 -12.79736 -12.52437 -12.46315 -12.21848 -11.80217 -11.52665 -11.46350 -11.27576 -11.08096 -10.84750 -10.44160 -10.04484 -8.85404 -7.89006 -5.19102 -0.73285 1.44372 1.44656 1.45699 1.54498 1.61829 2.17654 2.48468 2.64630 2.97360 3.32919 3.38349 3.47254 3.51183 3.70133 3.82130 3.94664 4.02475 4.28406 4.39120 4.56773 4.66031 4.67842 4.81328 4.83801 4.93350 4.94784 5.04897 5.14290 5.30044 5.43053 5.61154 5.69095 6.00935 6.02735 6.59928 6.97765 7.25785 7.64814 8.60561 9.27735 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022557 B = 0.003256 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.000407 B = 8597.046751 C = 9164.336725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.063 4.063 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.295 1.295 7 C -0.231 4.231 8 H 0.076 0.924 9 N -0.645 5.645 10 C 0.121 3.879 11 C -0.117 4.117 12 C 0.158 3.842 13 N -0.702 5.702 14 C 0.506 3.494 15 O -0.579 6.579 16 C 0.098 3.902 17 H 0.157 0.843 18 C -0.128 4.128 19 C -0.550 4.550 20 S 2.572 3.428 21 O -1.010 7.010 22 O -0.991 6.991 23 N -1.092 6.092 24 C 0.162 3.838 25 H 0.247 0.753 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.120 0.880 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.421 0.579 32 H 0.082 0.918 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.188 0.812 36 H 0.435 0.565 37 H 0.024 0.976 38 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.824 -13.839 4.781 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.257 4.257 3 Si 0.797 3.203 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.223 1.223 7 C -0.360 4.360 8 H 0.094 0.906 9 N -0.372 5.372 10 C -0.004 4.004 11 C -0.136 4.136 12 C 0.033 3.967 13 N -0.355 5.355 14 C 0.291 3.709 15 O -0.458 6.458 16 C -0.013 4.013 17 H 0.174 0.826 18 C -0.167 4.167 19 C -0.685 4.685 20 S 2.672 3.328 21 O -0.999 6.999 22 O -0.980 6.980 23 N -0.858 5.858 24 C 0.037 3.963 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.137 0.863 29 H 0.084 0.916 30 H 0.050 0.950 31 H 0.259 0.741 32 H 0.100 0.900 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.205 0.795 36 H 0.275 0.725 37 H 0.041 0.959 38 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.434 -13.528 6.298 19.424 hybrid contribution 0.997 1.361 -0.739 1.842 sum -11.437 -12.167 5.560 17.600 Atomic orbital electron populations 1.69949 1.06008 1.25240 1.58544 1.25454 0.96557 1.00285 1.03366 0.85163 0.78260 0.80221 0.76647 1.19409 1.21795 1.22266 1.19398 0.90681 0.83818 1.42091 0.90572 1.46416 1.04053 1.00501 1.86273 1.22792 0.95879 0.83667 0.98072 1.23128 0.98214 0.99001 0.93288 1.20753 0.84496 0.98846 0.92559 1.45820 1.14782 1.68265 1.06642 1.21018 0.90416 0.77023 0.82444 1.90735 1.47232 1.50126 1.57734 1.21994 0.93390 1.00684 0.85280 0.82568 1.22841 0.91390 0.96246 1.06270 1.30672 1.07988 1.15674 1.14134 1.06122 0.75436 0.75000 0.76286 1.93579 1.82073 1.66518 1.57762 1.93588 1.76720 1.43125 1.84593 1.55007 1.34424 1.77656 1.18677 1.22303 0.86827 0.90828 0.96387 0.94401 0.93170 0.92466 0.86264 0.91563 0.95003 0.74101 0.89953 0.82377 0.81305 0.79457 0.72549 0.95867 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.32 11.38 21.65 0.25 -55.07 16 2 C -0.06 -3.57 5.50 84.86 0.47 -3.10 16 3 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 6 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.23 -12.79 10.70 84.03 0.90 -11.89 16 8 H 0.08 4.12 7.83 -2.91 -0.02 4.09 16 9 N -0.65 -31.22 3.59 -716.78 -2.57 -33.79 16 10 C 0.12 4.33 8.51 86.48 0.74 5.07 16 11 C -0.12 -3.46 4.00 -10.13 -0.04 -3.50 16 12 C 0.16 4.85 5.43 86.38 0.47 5.32 16 13 N -0.70 -15.38 5.56 -463.06 -2.57 -17.96 16 14 C 0.51 12.38 7.05 87.66 0.62 13.00 16 15 O -0.58 -20.77 16.40 -3.04 -0.05 -20.82 16 16 C 0.10 1.40 3.41 44.50 0.15 1.55 16 17 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 18 C -0.13 -1.31 6.09 31.85 0.19 -1.11 16 19 C -0.55 -3.38 7.51 72.88 0.55 -2.84 16 20 S 2.57 45.69 6.49 -56.49 -0.37 45.33 16 21 O -1.01 -28.52 18.13 -127.77 -2.32 -30.83 16 22 O -0.99 -23.05 18.14 -127.77 -2.32 -25.37 16 23 N -1.09 -20.34 6.30 -170.01 -1.07 -21.42 16 24 C 0.16 6.74 7.01 86.48 0.61 7.34 16 25 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 26 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 27 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.03 1.33 7.97 -2.38 -0.02 1.31 16 31 H 0.42 5.57 8.47 -92.71 -0.79 4.78 16 32 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 33 H 0.16 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.17 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.19 -0.23 8.14 -2.39 -0.02 -0.24 16 36 H 0.43 8.82 8.74 -93.04 -0.81 8.00 16 37 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.05 2.18 7.11 -2.39 -0.02 2.16 16 Total: -1.00 -89.85 331.86 -4.85 -94.70 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -0.50 Total: 7.61 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: 4.65 Total: 9.83 kcal Atomic # 7 Polarization: -122.27 SS G_CDS: -5.97 Total: -128.24 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -4.68 Total: -77.03 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Atomic # 16 Polarization: 45.69 SS G_CDS: -0.37 Total: 45.33 kcal Total: -89.85 -4.85 -94.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032192553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.912 kcal (2) G-P(sol) polarization free energy of solvation -89.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds