Wall clock time and date at job start Tue Mar 31 2020 03:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47067 * 136.05761 * 359.90715 * 9 7 2 11 11 C 1.53756 * 87.88535 * 152.96062 * 10 9 7 12 12 C 1.47062 * 136.05579 * 180.27778 * 9 7 2 13 13 H 1.09000 * 113.47049 * 92.30781 * 12 9 7 14 14 C 1.52999 * 113.46768 * 321.92243 * 12 9 7 15 15 N 1.46509 * 109.47156 * 74.50885 * 14 12 9 16 16 C 1.34772 * 119.99841 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00536 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99748 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.34745 * 318.25673 * 18 16 15 20 20 C 1.54054 * 109.35807 * 77.90299 * 18 16 15 21 21 C 1.55604 * 104.29827 * 165.38081 * 20 18 16 22 22 S 1.83456 * 100.72205 * 322.08552 * 21 20 18 23 23 O 1.42103 * 111.24592 * 270.72199 * 22 21 20 24 24 O 1.42095 * 111.36016 * 131.50785 * 22 21 20 25 25 N 1.47067 * 109.35528 * 198.54441 * 18 16 15 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.46653 * 267.69473 * 10 9 7 28 28 H 1.08996 * 113.46465 * 38.13454 * 10 9 7 29 29 H 1.08994 * 114.39718 * 272.67556 * 11 10 9 30 30 H 1.08998 * 114.26361 * 139.79196 * 11 10 9 31 31 H 1.09004 * 109.47327 * 194.50408 * 14 12 9 32 32 H 1.09000 * 109.47607 * 314.50414 * 14 12 9 33 33 H 0.96997 * 119.99736 * 359.97438 * 15 14 12 34 34 H 1.09001 * 110.46938 * 284.08572 * 20 18 16 35 35 H 1.09008 * 110.46831 * 46.68172 * 20 18 16 36 36 H 1.08999 * 111.16970 * 204.21872 * 21 20 18 37 37 H 1.08998 * 111.20697 * 79.96270 * 21 20 18 38 38 H 0.97002 * 126.30239 * 30.75110 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.0877 -2.7948 0.0155 11 6 0.3415 -4.0957 -0.6827 12 6 1.6800 -3.8153 0.0143 13 1 1.7456 -4.2410 1.0156 14 6 2.8991 -4.1450 -0.8494 15 7 4.1156 -3.6910 -0.1709 16 6 5.3188 -3.8763 -0.7491 17 8 5.3946 -4.4193 -1.8309 18 6 6.5702 -3.4098 -0.0508 19 1 6.3922 -2.4304 0.3932 20 6 6.9396 -4.4124 1.0591 21 6 8.4045 -4.0467 1.4353 22 16 9.0885 -3.6353 -0.2165 23 8 9.6240 -4.7871 -0.8536 24 8 9.7918 -2.4008 -0.1926 25 7 7.6652 -3.3106 -1.0275 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4880 -2.9515 1.0171 28 1 -0.7257 -2.1604 -0.5996 29 1 0.3817 -4.0310 -1.7700 30 1 -0.1715 -4.9876 -0.3229 31 1 2.9518 -5.2222 -1.0076 32 1 2.8099 -3.6405 -1.8116 33 1 4.0549 -3.2564 0.6942 34 1 6.2825 -4.2874 1.9197 35 1 6.8864 -5.4341 0.6829 36 1 8.9226 -4.8991 1.8746 37 1 8.4371 -3.1840 2.1007 38 1 7.5769 -3.0966 -1.9695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039025308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:46 Heat of formation + Delta-G solvation = -37.927970 kcal Electronic energy + Delta-G solvation = -23202.370191 eV Core-core repulsion = 19595.413923 eV Total energy + Delta-G solvation = -3606.956268 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.00906 -38.32360 -37.24408 -36.60543 -36.04954 -34.27363 -32.31201 -32.00778 -28.78401 -28.01628 -26.34925 -23.56274 -23.19899 -21.92608 -20.47488 -19.79397 -19.33109 -18.21972 -17.49897 -16.92333 -16.39963 -15.92442 -15.76335 -15.43527 -14.97987 -14.79077 -14.41375 -13.95554 -13.76795 -13.69877 -13.48343 -13.02187 -12.66830 -12.33424 -12.19672 -12.16578 -11.98051 -11.79883 -11.62433 -11.20867 -11.07885 -10.89751 -10.85701 -10.64431 -10.18739 -9.99501 -9.90896 -9.59619 -9.28366 -8.90805 -8.74749 -6.99511 -5.86141 -3.19428 -0.02826 2.26793 2.63667 3.23774 3.31761 3.33405 3.36530 3.40027 3.66894 3.98381 4.15241 4.34181 4.49037 4.63475 4.89125 5.03486 5.08206 5.11376 5.29397 5.35089 5.39841 5.47573 5.61982 5.81143 5.98262 6.22378 6.30586 6.50741 6.59006 6.71974 6.90488 7.13361 7.29722 7.49096 7.67361 7.88045 8.30745 8.92801 9.60924 10.53072 11.30862 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.004160 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.522236 B = 6728.383341 C = 7843.673947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.005 4.005 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.217 4.217 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.151 3.849 11 C -0.161 4.161 12 C 0.127 3.873 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.511 3.489 17 O -0.533 6.533 18 C 0.092 3.908 19 H 0.110 0.890 20 C -0.118 4.118 21 C -0.596 4.596 22 S 2.579 3.421 23 O -0.957 6.957 24 O -0.956 6.956 25 N -1.081 6.081 26 H 0.253 0.747 27 H 0.025 0.975 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.405 0.595 34 H 0.120 0.880 35 H 0.102 0.898 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.391 -9.954 5.238 16.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.203 4.203 3 Si 0.739 3.261 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.345 4.345 8 H 0.098 0.902 9 N -0.327 5.327 10 C 0.025 3.975 11 C -0.200 4.200 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.358 5.358 16 C 0.294 3.706 17 O -0.409 6.409 18 C -0.020 4.020 19 H 0.127 0.873 20 C -0.157 4.157 21 C -0.726 4.726 22 S 2.673 3.327 23 O -0.946 6.946 24 O -0.946 6.946 25 N -0.849 5.849 26 H 0.064 0.936 27 H 0.043 0.957 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.239 0.761 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.163 0.837 37 H 0.164 0.836 38 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 12.445 -9.934 4.144 16.454 hybrid contribution -0.309 1.270 0.621 1.447 sum 12.136 -8.663 4.765 15.654 Atomic orbital electron populations 1.69828 1.05018 1.25297 1.56114 1.24783 0.95636 0.97486 1.02349 0.86119 0.78716 0.83943 0.77369 1.20461 1.21660 1.21725 1.18864 0.89972 0.81324 1.44301 0.90165 1.45704 1.02646 0.98543 1.85845 1.22083 0.88727 0.90143 0.96514 1.23705 0.96825 0.99050 1.00411 1.22421 0.91991 0.87845 0.95857 0.93410 1.21873 0.82861 0.98293 0.97353 1.45980 1.05842 1.60246 1.23748 1.20176 0.84480 0.79795 0.86172 1.90712 1.86638 1.42769 1.20811 1.21662 0.89273 1.01296 0.89783 0.87255 1.22631 0.94227 1.00373 0.98519 1.30846 1.07240 1.12809 1.21741 1.06104 0.73327 0.75137 0.78110 1.93633 1.77202 1.51617 1.72130 1.93641 1.70859 1.43971 1.86096 1.54935 1.21393 1.89122 1.19434 0.93639 0.95699 0.90927 0.90193 0.92338 0.92060 0.90902 0.76060 0.86146 0.87995 0.83654 0.83554 0.71869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.96 11.50 55.49 0.64 -25.32 16 2 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 3 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.22 -5.48 10.55 -15.06 -0.16 -5.64 16 8 H 0.08 1.91 7.50 -52.49 -0.39 1.51 16 9 N -0.60 -13.69 3.65 -176.84 -0.65 -14.33 16 10 C 0.15 3.27 7.41 -8.37 -0.06 3.21 16 11 C -0.16 -2.73 8.04 -26.08 -0.21 -2.93 16 12 C 0.13 2.21 4.10 -72.40 -0.30 1.92 16 13 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 14 C 0.12 1.95 5.53 -4.04 -0.02 1.93 16 15 N -0.71 -10.11 5.33 -60.29 -0.32 -10.43 16 16 C 0.51 7.27 7.06 -10.99 -0.08 7.20 16 17 O -0.53 -9.52 16.38 5.55 0.09 -9.43 16 18 C 0.09 0.95 3.41 -68.22 -0.23 0.72 16 19 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 20 C -0.12 -0.81 6.09 -24.79 -0.15 -0.96 16 21 C -0.60 -3.36 7.51 38.54 0.29 -3.07 16 22 S 2.58 26.25 6.49 -107.50 -0.70 25.55 16 23 O -0.96 -13.14 18.14 -57.43 -1.04 -14.18 16 24 O -0.96 -12.87 18.13 -57.43 -1.04 -13.91 16 25 N -1.08 -12.19 6.31 -5.08 -0.03 -12.23 16 26 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 1.79 7.12 -51.93 -0.37 1.42 16 29 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 33 H 0.40 5.24 8.37 -40.82 -0.34 4.90 16 34 H 0.12 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.72 8.10 -51.92 -0.42 0.30 16 36 H 0.15 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.15 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.44 5.16 8.72 -40.34 -0.35 4.81 16 LS Contribution 331.53 15.07 5.00 5.00 Total: -1.00 -36.73 331.53 -9.33 -46.06 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.24 Total: 4.98 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: -1.02 Total: 2.12 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.36 Total: -62.31 kcal Atomic # 8 Polarization: -35.53 SS G_CDS: -1.99 Total: -37.52 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 26.25 SS G_CDS: -0.70 Total: 25.55 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.73 -9.33 -46.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.137 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds