Wall clock time and date at job start Tue Mar 31 2020 03:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99833 * 2 1 4 4 H 1.48504 * 109.47306 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47021 * 299.99552 * 3 2 1 6 6 H 1.48501 * 109.47039 * 59.99969 * 3 2 1 7 7 C 1.38811 * 120.00467 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 359.72375 * 7 2 1 10 10 C 1.47067 * 136.05761 * 359.90715 * 9 7 2 11 11 C 1.53756 * 87.88535 * 152.96062 * 10 9 7 12 12 C 1.47062 * 136.05579 * 180.27778 * 9 7 2 13 13 H 1.09000 * 113.47049 * 92.30781 * 12 9 7 14 14 C 1.52999 * 113.46768 * 321.92243 * 12 9 7 15 15 N 1.46509 * 109.47156 * 74.50885 * 14 12 9 16 16 C 1.34772 * 119.99841 * 180.02562 * 15 14 12 17 17 O 1.21287 * 120.00536 * 359.97438 * 16 15 14 18 18 C 1.50705 * 119.99748 * 180.02562 * 16 15 14 19 19 H 1.08999 * 109.34745 * 318.25673 * 18 16 15 20 20 C 1.54054 * 109.35807 * 77.90299 * 18 16 15 21 21 C 1.55604 * 104.29827 * 165.38081 * 20 18 16 22 22 S 1.83456 * 100.72205 * 322.08552 * 21 20 18 23 23 O 1.42103 * 111.24592 * 270.72199 * 22 21 20 24 24 O 1.42095 * 111.36016 * 131.50785 * 22 21 20 25 25 N 1.47067 * 109.35528 * 198.54441 * 18 16 15 26 26 H 0.96995 * 120.00147 * 0.02562 * 1 2 3 27 27 H 1.08994 * 113.46653 * 267.69473 * 10 9 7 28 28 H 1.08996 * 113.46465 * 38.13454 * 10 9 7 29 29 H 1.08994 * 114.39718 * 272.67556 * 11 10 9 30 30 H 1.08998 * 114.26361 * 139.79196 * 11 10 9 31 31 H 1.09004 * 109.47327 * 194.50408 * 14 12 9 32 32 H 1.09000 * 109.47607 * 314.50414 * 14 12 9 33 33 H 0.96997 * 119.99736 * 359.97438 * 15 14 12 34 34 H 1.09001 * 110.46938 * 284.08572 * 20 18 16 35 35 H 1.09008 * 110.46831 * 46.68172 * 20 18 16 36 36 H 1.08999 * 111.16970 * 204.21872 * 21 20 18 37 37 H 1.08998 * 111.20697 * 79.96270 * 21 20 18 38 38 H 0.97002 * 126.30239 * 30.75110 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0068 10 6 -0.0877 -2.7948 0.0155 11 6 0.3415 -4.0957 -0.6827 12 6 1.6800 -3.8153 0.0143 13 1 1.7456 -4.2410 1.0156 14 6 2.8991 -4.1450 -0.8494 15 7 4.1156 -3.6910 -0.1709 16 6 5.3188 -3.8763 -0.7491 17 8 5.3946 -4.4193 -1.8309 18 6 6.5702 -3.4098 -0.0508 19 1 6.3922 -2.4304 0.3932 20 6 6.9396 -4.4124 1.0591 21 6 8.4045 -4.0467 1.4353 22 16 9.0885 -3.6353 -0.2165 23 8 9.6240 -4.7871 -0.8536 24 8 9.7918 -2.4008 -0.1926 25 7 7.6652 -3.3106 -1.0275 26 1 -0.4850 0.8400 -0.0004 27 1 -0.4880 -2.9515 1.0171 28 1 -0.7257 -2.1604 -0.5996 29 1 0.3817 -4.0310 -1.7700 30 1 -0.1715 -4.9876 -0.3229 31 1 2.9518 -5.2222 -1.0076 32 1 2.8099 -3.6405 -1.8116 33 1 4.0549 -3.2564 0.6942 34 1 6.2825 -4.2874 1.9197 35 1 6.8864 -5.4341 0.6829 36 1 8.9226 -4.8991 1.8746 37 1 8.4371 -3.1840 2.1007 38 1 7.5769 -3.0966 -1.9695 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039025308.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:45 Heat of formation + Delta-G solvation = -70.204508 kcal Electronic energy + Delta-G solvation = -23203.769806 eV Core-core repulsion = 19595.413923 eV Total energy + Delta-G solvation = -3608.355884 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12530 -39.81757 -38.13337 -37.48678 -36.93310 -35.54224 -34.20730 -32.68687 -30.10570 -29.70505 -27.33386 -25.35925 -24.04766 -23.19690 -21.58184 -20.94111 -20.56050 -19.24330 -18.50758 -18.22040 -17.51611 -17.08030 -16.96982 -16.62011 -16.23256 -15.83828 -15.66027 -15.44303 -14.93296 -14.72103 -14.36593 -14.20571 -13.69336 -13.45934 -13.26880 -13.21656 -13.08729 -12.97972 -12.96773 -12.67609 -12.55091 -12.47990 -12.26935 -11.81847 -11.58773 -11.54204 -11.26828 -10.92235 -10.81953 -10.43600 -10.00088 -8.85655 -7.84659 -5.15882 -0.74920 1.41586 1.46122 1.48557 1.55954 1.64707 2.19749 2.49413 2.63674 2.95606 3.36597 3.39056 3.45510 3.50728 3.74034 3.92935 3.97790 4.16001 4.29997 4.37895 4.40739 4.65163 4.68104 4.73513 4.82432 4.89576 4.92438 5.09516 5.14831 5.37222 5.46154 5.62759 5.78233 5.98040 6.00191 6.57448 6.96298 7.21401 7.68116 8.67398 9.33350 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017392 B = 0.004160 C = 0.003569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.522236 B = 6728.383341 C = 7843.673947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.072 4.072 3 Si 0.964 3.036 4 H -0.260 1.260 5 H -0.305 1.305 6 H -0.295 1.295 7 C -0.202 4.202 8 H 0.094 0.906 9 N -0.629 5.629 10 C 0.141 3.859 11 C -0.138 4.138 12 C 0.136 3.864 13 H 0.077 0.923 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.510 3.490 17 O -0.575 6.575 18 C 0.088 3.912 19 H 0.132 0.868 20 C -0.118 4.118 21 C -0.549 4.549 22 S 2.569 3.431 23 O -1.003 7.003 24 O -0.998 6.998 25 N -1.093 6.093 26 H 0.243 0.757 27 H 0.024 0.976 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.081 0.919 32 H 0.038 0.962 33 H 0.414 0.586 34 H 0.158 0.842 35 H 0.101 0.899 36 H 0.179 0.821 37 H 0.179 0.821 38 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 -11.531 7.727 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.265 4.265 3 Si 0.794 3.206 4 H -0.184 1.184 5 H -0.233 1.233 6 H -0.223 1.223 7 C -0.330 4.330 8 H 0.112 0.888 9 N -0.355 5.355 10 C 0.015 3.985 11 C -0.176 4.176 12 C 0.030 3.970 13 H 0.094 0.906 14 C 0.004 3.996 15 N -0.355 5.355 16 C 0.295 3.705 17 O -0.455 6.455 18 C -0.024 4.024 19 H 0.149 0.851 20 C -0.158 4.158 21 C -0.684 4.684 22 S 2.669 3.331 23 O -0.992 6.992 24 O -0.988 6.988 25 N -0.858 5.858 26 H 0.052 0.948 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.057 0.943 33 H 0.250 0.750 34 H 0.176 0.824 35 H 0.119 0.881 36 H 0.197 0.803 37 H 0.197 0.803 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 13.626 -11.533 6.621 19.039 hybrid contribution -0.710 1.655 -0.128 1.805 sum 12.915 -9.878 6.494 17.509 Atomic orbital electron populations 1.70010 1.06410 1.24996 1.59104 1.25505 0.96318 1.00495 1.04156 0.85217 0.78691 0.80541 0.76190 1.18386 1.23307 1.22258 1.19292 0.90779 0.82262 1.40695 0.88807 1.46015 1.03543 1.00160 1.85790 1.22096 0.87979 0.92057 0.96358 1.23530 0.96256 0.98010 0.99842 1.22563 0.92696 0.84512 0.97228 0.90554 1.21610 0.83342 0.99075 0.95578 1.45912 1.05387 1.60203 1.23960 1.20838 0.85384 0.78669 0.85658 1.90699 1.87292 1.44664 1.22817 1.21985 0.86949 1.03379 0.90040 0.85070 1.22827 0.95364 0.99262 0.98300 1.30666 1.05498 1.15420 1.16866 1.06235 0.72988 0.73705 0.80210 1.93573 1.78377 1.52480 1.74819 1.93585 1.72189 1.45524 1.87480 1.55036 1.22170 1.89085 1.19520 0.94769 0.95797 0.94949 0.90655 0.88301 0.90062 0.94314 0.74978 0.82413 0.88063 0.80319 0.80316 0.72765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.70 11.50 21.65 0.25 -55.45 16 2 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 3 Si 0.96 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 5 H -0.30 -14.45 7.11 99.48 0.71 -13.75 16 6 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 7 C -0.20 -9.99 10.55 84.03 0.89 -9.11 16 8 H 0.09 4.26 7.50 -2.91 -0.02 4.23 16 9 N -0.63 -27.93 3.65 -713.41 -2.60 -30.53 16 10 C 0.14 6.06 7.41 83.27 0.62 6.67 16 11 C -0.14 -4.34 8.04 31.02 0.25 -4.09 16 12 C 0.14 4.36 4.10 41.79 0.17 4.53 16 13 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 14 C 0.13 3.88 5.53 86.38 0.48 4.35 16 15 N -0.70 -18.07 5.33 -463.03 -2.47 -20.54 16 16 C 0.51 13.43 7.06 87.66 0.62 14.05 16 17 O -0.58 -20.19 16.38 -3.05 -0.05 -20.24 16 18 C 0.09 1.56 3.41 44.50 0.15 1.71 16 19 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 20 C -0.12 -1.04 6.09 31.85 0.19 -0.85 16 21 C -0.55 -3.38 7.51 72.88 0.55 -2.83 16 22 S 2.57 49.05 6.49 -56.49 -0.37 48.68 16 23 O -1.00 -27.55 18.14 -127.76 -2.32 -29.86 16 24 O -1.00 -26.43 18.13 -127.76 -2.32 -28.75 16 25 N -1.09 -23.65 6.31 -170.00 -1.07 -24.73 16 26 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 27 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.03 1.64 7.12 -2.39 -0.02 1.62 16 29 H 0.07 2.46 8.12 -2.39 -0.02 2.44 16 30 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.41 9.10 8.37 -92.71 -0.78 8.33 16 34 H 0.16 0.36 8.14 -2.39 -0.02 0.34 16 35 H 0.10 1.01 8.10 -2.38 -0.02 0.99 16 36 H 0.18 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.18 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.43 10.42 8.72 -93.01 -0.81 9.61 16 Total: -1.00 -84.30 331.53 -5.03 -89.33 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -0.49 Total: 15.28 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 4.38 Total: 11.03 kcal Atomic # 7 Polarization: -125.34 SS G_CDS: -5.90 Total: -131.24 kcal Atomic # 8 Polarization: -74.17 SS G_CDS: -4.68 Total: -78.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.37 Total: 48.68 kcal Total: -84.30 -5.03 -89.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025308.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.126 kcal (2) G-P(sol) polarization free energy of solvation -84.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds