Wall clock time and date at job start Tue Mar 31 2020 03:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47036 * 299.99458 * 3 2 1 6 6 H 1.48501 * 109.47096 * 59.99237 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99730 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.49437 * 359.97438 * 9 7 2 11 11 C 1.53940 * 86.11741 * 155.36508 * 10 9 7 12 12 C 1.47583 * 134.49457 * 180.02562 * 9 7 2 13 13 H 1.08992 * 113.87559 * 90.31749 * 12 9 7 14 14 C 1.53004 * 113.76535 * 318.93553 * 12 9 7 15 15 N 1.46499 * 109.47198 * 78.50603 * 14 12 9 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 H 1.08995 * 108.58539 * 43.45294 * 18 16 15 20 20 C 1.53205 * 108.64685 * 285.61625 * 18 16 15 21 21 C 1.55556 * 106.24465 * 211.34372 * 20 18 16 22 22 S 1.83901 * 99.63955 * 36.98830 * 21 20 18 23 23 O 1.42102 * 111.46622 * 215.91178 * 22 21 20 24 24 O 1.42098 * 111.46268 * 75.86067 * 22 21 20 25 25 N 1.46453 * 108.64455 * 161.45529 * 18 16 15 26 26 H 0.97000 * 119.99749 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.76545 * 41.06312 * 10 9 7 28 28 H 1.09002 * 113.77040 * 269.66902 * 10 9 7 29 29 H 1.08998 * 113.74585 * 269.26309 * 11 10 9 30 30 H 1.09004 * 113.74160 * 137.95546 * 11 10 9 31 31 H 1.09009 * 109.46730 * 318.50390 * 14 12 9 32 32 H 1.08998 * 109.46846 * 198.50935 * 14 12 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 34 34 H 1.08995 * 110.10021 * 330.54190 * 20 18 16 35 35 H 1.09003 * 110.09807 * 92.14543 * 20 18 16 36 36 H 1.09004 * 111.36896 * 279.39101 * 21 20 18 37 37 H 1.09000 * 111.37207 * 154.59761 * 21 20 18 38 38 H 0.97000 * 126.07930 * 302.85167 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 0.0005 11 6 0.3470 -4.0830 -0.6397 12 6 1.7201 -3.8102 0.0015 13 1 1.8319 -4.2363 0.9984 14 6 2.9030 -4.1225 -0.9173 15 7 4.1498 -3.7191 -0.2625 16 6 5.3287 -3.8947 -0.8916 17 8 5.3578 -4.3915 -1.9976 18 6 6.6108 -3.4740 -0.2205 19 1 6.5764 -3.7887 0.8225 20 6 6.7081 -1.9457 -0.2645 21 6 8.2244 -1.6084 -0.3465 22 16 8.7875 -2.9829 -1.4308 23 8 10.0816 -3.4395 -1.0619 24 8 8.4266 -2.7569 -2.7864 25 7 7.7286 -4.1542 -0.8783 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7168 -2.1391 -0.6548 28 1 -0.5272 -2.8729 0.9981 29 1 0.3591 -4.0623 -1.7294 30 1 -0.1593 -4.9597 -0.2357 31 1 2.7904 -3.5752 -1.8533 32 1 2.9304 -5.1925 -1.1232 33 1 4.1265 -3.3215 0.6220 34 1 6.1910 -1.5626 -1.1442 35 1 6.2772 -1.5167 0.6402 36 1 8.6960 -1.6582 0.6350 37 1 8.3909 -0.6387 -0.8155 38 1 7.8358 -5.1132 -0.9764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039025310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:50 Heat of formation + Delta-G solvation = -39.185819 kcal Electronic energy + Delta-G solvation = -23428.764768 eV Core-core repulsion = 19821.753956 eV Total energy + Delta-G solvation = -3607.010812 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -39.98187 -38.12905 -37.23618 -36.45608 -35.98797 -34.21387 -32.26875 -31.99421 -28.78776 -27.94771 -26.42115 -23.44157 -23.05119 -21.99689 -20.37638 -19.79302 -19.19800 -18.10702 -17.54055 -16.93299 -16.50181 -15.91905 -15.76849 -15.30810 -14.76280 -14.71007 -14.48679 -13.96182 -13.72934 -13.58483 -13.27049 -13.16966 -12.60517 -12.25444 -12.13452 -12.10589 -11.89732 -11.60397 -11.49121 -11.18718 -11.09642 -10.81914 -10.78327 -10.60823 -10.32846 -10.03395 -9.81319 -9.61480 -9.20156 -8.87845 -8.70316 -6.96932 -5.84075 -3.16787 0.04489 2.31283 2.69604 3.30327 3.32061 3.34787 3.39175 3.39367 3.65281 4.01855 4.24889 4.34245 4.55879 4.74739 4.91273 5.05486 5.13179 5.22153 5.32222 5.39523 5.55598 5.62010 5.64985 5.84628 6.01622 6.25091 6.34560 6.55477 6.62700 6.77498 6.85872 7.17459 7.34383 7.52319 7.73206 7.90559 8.39088 8.95779 9.63339 10.52072 11.32707 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.004570 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.846257 B = 6124.834325 C = 7385.643529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.007 4.007 3 Si 0.907 3.093 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.220 4.220 8 H 0.079 0.921 9 N -0.603 5.603 10 C 0.158 3.842 11 C -0.156 4.156 12 C 0.126 3.874 13 H 0.050 0.950 14 C 0.122 3.878 15 N -0.711 5.711 16 C 0.496 3.504 17 O -0.527 6.527 18 C 0.099 3.901 19 H 0.107 0.893 20 C -0.121 4.121 21 C -0.588 4.588 22 S 2.571 3.429 23 O -0.962 6.962 24 O -0.941 6.941 25 N -1.076 6.076 26 H 0.253 0.747 27 H 0.074 0.926 28 H 0.027 0.973 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.403 0.597 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.437 0.563 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -6.494 3.728 14.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.348 4.348 8 H 0.097 0.903 9 N -0.329 5.329 10 C 0.033 3.967 11 C -0.195 4.195 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.002 4.002 15 N -0.362 5.362 16 C 0.278 3.722 17 O -0.403 6.403 18 C -0.014 4.014 19 H 0.125 0.875 20 C -0.161 4.161 21 C -0.719 4.719 22 S 2.665 3.335 23 O -0.951 6.951 24 O -0.930 6.930 25 N -0.842 5.842 26 H 0.063 0.937 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.237 0.763 34 H 0.124 0.876 35 H 0.143 0.857 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 12.893 -6.510 2.188 14.608 hybrid contribution -0.114 1.035 1.099 1.514 sum 12.779 -5.475 3.286 14.286 Atomic orbital electron populations 1.69824 1.04993 1.25191 1.56449 1.24772 0.95617 0.97427 1.02555 0.86144 0.78615 0.84159 0.77332 1.20541 1.21721 1.21833 1.18949 0.90105 0.81884 1.43851 0.90317 1.46074 1.02309 0.98534 1.85972 1.22201 0.87937 0.89634 0.96902 1.23779 0.96117 0.98991 1.00611 1.22511 0.92351 0.87694 0.95626 0.93281 1.21803 0.82176 0.98812 0.97446 1.46002 1.06055 1.62823 1.21307 1.20720 0.85151 0.79770 0.86579 1.90731 1.86888 1.43494 1.19139 1.21127 0.87463 0.93629 0.99168 0.87550 1.22423 0.94129 0.91017 1.08522 1.30775 1.05488 1.18573 1.17067 1.06440 0.73710 0.77483 0.75909 1.93610 1.38338 1.78773 1.84402 1.93693 1.83162 1.84617 1.31560 1.54673 1.34319 1.19557 1.75606 0.93682 0.90819 0.95554 0.90482 0.92810 0.90811 0.92104 0.76276 0.87626 0.85738 0.83706 0.83689 0.72219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.92 11.38 55.49 0.63 -25.29 16 2 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 20.79 29.55 -169.99 -5.02 15.77 16 4 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.22 -5.51 10.51 -15.06 -0.16 -5.67 16 8 H 0.08 1.83 7.80 -52.49 -0.41 1.42 16 9 N -0.60 -13.75 3.57 -170.73 -0.61 -14.36 16 10 C 0.16 3.47 7.51 -2.98 -0.02 3.44 16 11 C -0.16 -2.70 7.86 -25.79 -0.20 -2.90 16 12 C 0.13 2.23 4.33 -66.84 -0.29 1.94 16 13 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 14 C 0.12 2.03 5.54 -4.04 -0.02 2.01 16 15 N -0.71 -10.33 5.53 -60.29 -0.33 -10.67 16 16 C 0.50 7.28 6.84 -10.99 -0.08 7.21 16 17 O -0.53 -9.95 16.49 5.55 0.09 -9.85 16 18 C 0.10 1.02 3.55 -69.00 -0.24 0.77 16 19 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 20 C -0.12 -1.13 6.06 -25.27 -0.15 -1.28 16 21 C -0.59 -4.29 7.66 38.52 0.29 -3.99 16 22 S 2.57 28.50 6.47 -107.50 -0.70 27.80 16 23 O -0.96 -12.82 18.14 -57.37 -1.04 -13.86 16 24 O -0.94 -14.85 18.14 -57.37 -1.04 -15.89 16 25 N -1.08 -11.42 6.11 -5.82 -0.04 -11.45 16 26 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 27 H 0.07 1.82 7.15 -51.93 -0.37 1.45 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.40 5.19 8.47 -40.82 -0.35 4.85 16 34 H 0.11 1.20 7.82 -51.93 -0.41 0.79 16 35 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.14 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.14 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.44 4.18 8.96 -40.36 -0.36 3.82 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -36.90 331.98 -9.28 -46.18 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -5.25 Total: 5.37 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.97 Total: 1.25 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: -0.35 Total: -61.77 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.99 Total: -39.61 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: 28.50 SS G_CDS: -0.70 Total: 27.80 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -36.90 -9.28 -46.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.993 kcal (2) G-P(sol) polarization free energy of solvation -36.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds