Wall clock time and date at job start Tue Mar 31 2020 03:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00131 * 2 1 4 4 H 1.48499 * 109.47002 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47036 * 299.99458 * 3 2 1 6 6 H 1.48501 * 109.47096 * 59.99237 * 3 2 1 7 7 C 1.38816 * 119.99892 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99730 * 180.02562 * 7 2 1 9 9 N 1.36933 * 119.99953 * 0.02562 * 7 2 1 10 10 C 1.47585 * 134.49437 * 359.97438 * 9 7 2 11 11 C 1.53940 * 86.11741 * 155.36508 * 10 9 7 12 12 C 1.47583 * 134.49457 * 180.02562 * 9 7 2 13 13 H 1.08992 * 113.87559 * 90.31749 * 12 9 7 14 14 C 1.53004 * 113.76535 * 318.93553 * 12 9 7 15 15 N 1.46499 * 109.47198 * 78.50603 * 14 12 9 16 16 C 1.34777 * 119.99665 * 180.27868 * 15 14 12 17 17 O 1.21283 * 119.99990 * 359.71991 * 16 15 14 18 18 C 1.50698 * 119.99538 * 179.72653 * 16 15 14 19 19 H 1.08995 * 108.58539 * 43.45294 * 18 16 15 20 20 C 1.53205 * 108.64685 * 285.61625 * 18 16 15 21 21 C 1.55556 * 106.24465 * 211.34372 * 20 18 16 22 22 S 1.83901 * 99.63955 * 36.98830 * 21 20 18 23 23 O 1.42102 * 111.46622 * 215.91178 * 22 21 20 24 24 O 1.42098 * 111.46268 * 75.86067 * 22 21 20 25 25 N 1.46453 * 108.64455 * 161.45529 * 18 16 15 26 26 H 0.97000 * 119.99749 * 0.02562 * 1 2 3 27 27 H 1.09003 * 113.76545 * 41.06312 * 10 9 7 28 28 H 1.09002 * 113.77040 * 269.66902 * 10 9 7 29 29 H 1.08998 * 113.74585 * 269.26309 * 11 10 9 30 30 H 1.09004 * 113.74160 * 137.95546 * 11 10 9 31 31 H 1.09009 * 109.46730 * 318.50390 * 14 12 9 32 32 H 1.08998 * 109.46846 * 198.50935 * 14 12 9 33 33 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 34 34 H 1.08995 * 110.10021 * 330.54190 * 20 18 16 35 35 H 1.09003 * 110.09807 * 92.14543 * 20 18 16 36 36 H 1.09004 * 111.36896 * 279.39101 * 21 20 18 37 37 H 1.09000 * 111.37207 * 154.59761 * 21 20 18 38 38 H 0.97000 * 126.07930 * 302.85167 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 -0.1033 -2.7574 0.0005 11 6 0.3470 -4.0830 -0.6397 12 6 1.7201 -3.8102 0.0015 13 1 1.8319 -4.2363 0.9984 14 6 2.9030 -4.1225 -0.9173 15 7 4.1498 -3.7191 -0.2625 16 6 5.3287 -3.8947 -0.8916 17 8 5.3578 -4.3915 -1.9976 18 6 6.6108 -3.4740 -0.2205 19 1 6.5764 -3.7887 0.8225 20 6 6.7081 -1.9457 -0.2645 21 6 8.2244 -1.6084 -0.3465 22 16 8.7875 -2.9829 -1.4308 23 8 10.0816 -3.4395 -1.0619 24 8 8.4266 -2.7569 -2.7864 25 7 7.7286 -4.1542 -0.8783 26 1 -0.4850 0.8401 -0.0004 27 1 -0.7168 -2.1391 -0.6548 28 1 -0.5272 -2.8729 0.9981 29 1 0.3591 -4.0623 -1.7294 30 1 -0.1593 -4.9597 -0.2357 31 1 2.7904 -3.5752 -1.8533 32 1 2.9304 -5.1925 -1.1232 33 1 4.1265 -3.3215 0.6220 34 1 6.1910 -1.5626 -1.1442 35 1 6.2772 -1.5167 0.6402 36 1 8.6960 -1.6582 0.6350 37 1 8.3909 -0.6387 -0.8155 38 1 7.8358 -5.1132 -0.9764 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039025310.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:49 Heat of formation + Delta-G solvation = -71.697051 kcal Electronic energy + Delta-G solvation = -23430.174561 eV Core-core repulsion = 19821.753956 eV Total energy + Delta-G solvation = -3608.420605 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.11994 -39.65134 -38.20659 -37.41360 -36.94439 -35.52658 -34.13885 -32.75243 -30.09199 -29.68618 -27.46104 -25.24305 -24.08296 -23.23754 -21.54221 -20.77926 -20.62461 -19.14991 -18.63753 -18.17588 -17.70314 -17.04084 -16.95761 -16.74766 -16.03861 -15.89928 -15.62938 -15.47910 -14.91788 -14.72369 -14.36759 -14.21221 -13.72045 -13.39301 -13.27473 -13.20633 -13.10712 -12.94234 -12.91992 -12.64952 -12.52645 -12.39812 -12.21540 -11.79853 -11.54844 -11.47201 -11.40529 -11.14083 -10.78963 -10.26629 -9.99019 -8.83296 -7.80341 -5.12188 -0.75837 1.46995 1.48532 1.51227 1.59562 1.62145 2.24987 2.53299 2.59754 2.88378 3.27587 3.37340 3.45138 3.52881 3.70315 4.00586 4.04080 4.15927 4.25783 4.38432 4.41527 4.63485 4.67298 4.74824 4.78129 4.91039 4.94434 5.09124 5.14976 5.39377 5.48763 5.66616 5.79022 6.02765 6.07296 6.61374 7.00337 7.27214 7.72431 8.66631 9.37152 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017218 B = 0.004570 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1625.846257 B = 6124.834325 C = 7385.643529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.076 4.076 3 Si 0.963 3.037 4 H -0.248 1.248 5 H -0.309 1.309 6 H -0.298 1.298 7 C -0.207 4.207 8 H 0.098 0.902 9 N -0.628 5.628 10 C 0.149 3.851 11 C -0.135 4.135 12 C 0.136 3.864 13 H 0.077 0.923 14 C 0.131 3.869 15 N -0.705 5.705 16 C 0.491 3.509 17 O -0.577 6.577 18 C 0.102 3.898 19 H 0.155 0.845 20 C -0.130 4.130 21 C -0.546 4.546 22 S 2.561 3.439 23 O -0.991 6.991 24 O -1.003 7.003 25 N -1.077 6.077 26 H 0.242 0.758 27 H 0.035 0.965 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.414 0.586 34 H 0.080 0.920 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.168 0.832 38 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.904 -6.853 6.103 16.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.609 5.609 2 C -0.268 4.268 3 Si 0.792 3.208 4 H -0.171 1.171 5 H -0.237 1.237 6 H -0.226 1.226 7 C -0.336 4.336 8 H 0.115 0.885 9 N -0.355 5.355 10 C 0.023 3.977 11 C -0.174 4.174 12 C 0.030 3.970 13 H 0.094 0.906 14 C 0.005 3.995 15 N -0.356 5.356 16 C 0.276 3.724 17 O -0.456 6.456 18 C -0.010 4.010 19 H 0.172 0.828 20 C -0.170 4.170 21 C -0.680 4.680 22 S 2.660 3.340 23 O -0.980 6.980 24 O -0.992 6.992 25 N -0.842 5.842 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.251 0.749 34 H 0.099 0.901 35 H 0.176 0.824 36 H 0.204 0.796 37 H 0.186 0.814 38 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 14.732 -6.938 4.564 16.912 hybrid contribution -0.711 1.078 0.383 1.347 sum 14.021 -5.860 4.947 15.981 Atomic orbital electron populations 1.70026 1.06574 1.24903 1.59405 1.25559 0.96347 1.00697 1.04229 0.85224 0.79384 0.80271 0.75887 1.17093 1.23703 1.22610 1.19461 0.91133 0.82651 1.40335 0.88460 1.46423 1.03051 1.00098 1.85891 1.22149 0.87417 0.91728 0.96376 1.23590 0.95680 0.97846 1.00269 1.22656 0.92890 0.84559 0.96888 0.90550 1.21523 0.82954 0.99237 0.95754 1.45927 1.05438 1.62649 1.21622 1.21581 0.86389 0.78486 0.85974 1.90717 1.87665 1.45726 1.21452 1.21395 0.84440 0.94455 1.00759 0.82777 1.22600 0.95261 0.90069 1.09081 1.30636 1.03574 1.16407 1.17424 1.06502 0.73264 0.78680 0.75598 1.93568 1.39869 1.80051 1.84541 1.93623 1.83731 1.85748 1.36082 1.54636 1.34388 1.19778 1.75393 0.94914 0.94680 0.95934 0.90820 0.88995 0.94338 0.90504 0.74940 0.90094 0.82361 0.79562 0.81436 0.71984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -55.76 11.38 21.65 0.25 -55.51 16 2 C -0.08 -4.05 5.50 84.86 0.47 -3.58 16 3 Si 0.96 42.39 29.55 68.60 2.03 44.42 16 4 H -0.25 -9.43 7.11 99.48 0.71 -8.72 16 5 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.30 -13.35 7.11 99.48 0.71 -12.64 16 7 C -0.21 -10.12 10.51 84.04 0.88 -9.23 16 8 H 0.10 4.24 7.80 -2.91 -0.02 4.22 16 9 N -0.63 -28.02 3.57 -694.06 -2.48 -30.50 16 10 C 0.15 6.51 7.51 86.48 0.65 7.16 16 11 C -0.14 -4.41 7.86 31.26 0.25 -4.16 16 12 C 0.14 4.47 4.33 45.10 0.20 4.67 16 13 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.13 4.09 5.54 86.38 0.48 4.57 16 15 N -0.70 -18.48 5.53 -463.05 -2.56 -21.04 16 16 C 0.49 13.39 6.84 87.66 0.60 13.99 16 17 O -0.58 -21.59 16.49 -3.04 -0.05 -21.64 16 18 C 0.10 1.73 3.55 44.32 0.16 1.89 16 19 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 20 C -0.13 -1.85 6.06 31.54 0.19 -1.66 16 21 C -0.55 -5.35 7.66 72.86 0.56 -4.79 16 22 S 2.56 53.40 6.47 -56.49 -0.37 53.03 16 23 O -0.99 -25.42 18.14 -127.81 -2.32 -27.74 16 24 O -1.00 -32.32 18.14 -127.81 -2.32 -34.64 16 25 N -1.08 -20.85 6.11 -172.32 -1.05 -21.91 16 26 H 0.24 13.92 8.31 -92.71 -0.77 13.15 16 27 H 0.03 1.79 7.15 -2.39 -0.02 1.77 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 2.46 8.10 -2.39 -0.02 2.44 16 30 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 31 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.41 8.96 8.47 -92.71 -0.79 8.18 16 34 H 0.08 1.61 7.82 -2.39 -0.02 1.59 16 35 H 0.16 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.19 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.17 1.08 8.14 -2.39 -0.02 1.07 16 38 H 0.44 7.96 8.96 -93.00 -0.83 7.12 16 Total: -1.00 -85.13 331.98 -4.97 -90.10 By element: Atomic # 1 Polarization: 17.08 SS G_CDS: -0.52 Total: 16.55 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 4.42 Total: 8.86 kcal Atomic # 7 Polarization: -123.10 SS G_CDS: -5.85 Total: -128.95 kcal Atomic # 8 Polarization: -79.32 SS G_CDS: -4.69 Total: -84.01 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 53.40 SS G_CDS: -0.37 Total: 53.03 kcal Total: -85.13 -4.97 -90.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025310.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.400 kcal (2) G-P(sol) polarization free energy of solvation -85.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds