Wall clock time and date at job start Tue Mar 31 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47001 * 274.98655 * 3 2 1 5 5 H 1.48501 * 109.47380 * 34.98697 * 3 2 1 6 6 H 1.48499 * 109.47400 * 154.98789 * 3 2 1 7 7 C 1.38810 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00231 * 185.05706 * 7 2 1 9 9 N 1.36937 * 119.99490 * 5.05445 * 7 2 1 10 10 C 1.47061 * 136.06180 * 353.51685 * 9 7 2 11 11 C 1.53495 * 87.98896 * 207.15302 * 10 9 7 12 12 C 1.47076 * 136.05329 * 173.56044 * 9 7 2 13 13 H 1.09000 * 113.46787 * 267.68667 * 12 9 7 14 14 C 1.52998 * 113.46424 * 38.07117 * 12 9 7 15 15 N 1.46507 * 109.47047 * 285.48909 * 14 12 9 16 16 C 1.34774 * 119.99589 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00700 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99540 * 180.02562 * 16 15 14 19 19 H 1.09006 * 109.29332 * 318.22914 * 18 16 15 20 20 C 1.54062 * 109.35690 * 77.90869 * 18 16 15 21 21 C 1.55604 * 104.29748 * 165.38223 * 20 18 16 22 22 S 1.83454 * 100.72169 * 322.07961 * 21 20 18 23 23 O 1.42097 * 111.24985 * 270.72539 * 22 21 20 24 24 O 1.42100 * 111.24761 * 131.47452 * 22 21 20 25 25 N 1.47064 * 109.35780 * 198.54745 * 18 16 15 26 26 H 0.97000 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.09001 * 113.46742 * 321.93199 * 10 9 7 28 28 H 1.09002 * 113.46743 * 92.31356 * 10 9 7 29 29 H 1.09005 * 114.21002 * 220.34764 * 11 10 9 30 30 H 1.08996 * 114.20857 * 87.51166 * 11 10 9 31 31 H 1.08998 * 109.46881 * 165.49476 * 14 12 9 32 32 H 1.08999 * 109.47362 * 45.48928 * 14 12 9 33 33 H 0.96997 * 119.99682 * 0.02562 * 15 14 12 34 34 H 1.09001 * 110.47068 * 46.67776 * 20 18 16 35 35 H 1.09003 * 110.58156 * 284.13590 * 20 18 16 36 36 H 1.09001 * 111.16586 * 204.21907 * 21 20 18 37 37 H 1.08998 * 111.20654 * 79.96273 * 21 20 18 38 38 H 0.97003 * 126.30031 * 31.05206 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3949 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4123 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0830 9 7 1.3297 -2.3857 -0.1034 10 6 -0.0819 -2.7981 -0.1139 11 6 0.3668 -4.1560 0.4436 12 6 1.6887 -3.8041 -0.2529 13 1 1.7344 -4.1332 -1.2911 14 6 2.9268 -4.2071 0.5504 15 7 4.1271 -3.6847 -0.1075 16 6 5.3430 -3.9181 0.4250 17 8 5.4436 -4.5602 1.4490 18 6 6.5776 -3.3803 -0.2514 19 1 6.4863 -3.5169 -1.3290 20 6 6.7189 -1.8787 0.0628 21 6 8.1799 -1.5359 -0.3486 22 16 9.0520 -3.0577 0.1890 23 8 9.4909 -2.9510 1.5363 24 8 9.8997 -3.5552 -0.8372 25 7 7.7574 -4.1117 0.2343 26 1 -0.4850 0.8401 0.0004 27 1 -0.7053 -2.2300 0.5765 28 1 -0.5090 -2.8586 -1.1150 29 1 -0.1528 -5.0108 0.0106 30 1 0.4310 -4.1935 1.5311 31 1 2.9865 -5.2941 0.6051 32 1 2.8563 -3.7959 1.5574 33 1 4.0466 -3.1709 -0.9263 34 1 6.5699 -1.6963 1.1271 35 1 6.0105 -1.2957 -0.5258 36 1 8.5456 -0.6616 0.1900 37 1 8.2632 -1.3944 -1.4262 38 1 7.7803 -5.0372 0.5238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039025311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:55 Heat of formation + Delta-G solvation = -38.712359 kcal Electronic energy + Delta-G solvation = -23329.564447 eV Core-core repulsion = 19722.574166 eV Total energy + Delta-G solvation = -3606.990282 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.00257 -38.33247 -37.22923 -36.57548 -36.02966 -34.27403 -32.34204 -31.96181 -28.78036 -28.03239 -26.32758 -23.57860 -23.12968 -21.92695 -20.46357 -19.78947 -19.33172 -18.21166 -17.46548 -16.90312 -16.42050 -15.92543 -15.75776 -15.36560 -14.94652 -14.79007 -14.43251 -14.01845 -13.76658 -13.60811 -13.32296 -13.13716 -12.60523 -12.31006 -12.16463 -12.13019 -11.96180 -11.77386 -11.65076 -11.20327 -11.09403 -10.89314 -10.82947 -10.66958 -10.20460 -10.02490 -9.95514 -9.60974 -9.26729 -8.93488 -8.74368 -7.00232 -5.89749 -3.21963 0.00741 2.28929 2.62536 3.24635 3.27771 3.30227 3.36165 3.37370 3.74238 4.04930 4.21075 4.31345 4.53048 4.67378 4.93398 5.04715 5.09817 5.19712 5.28306 5.43104 5.46765 5.56738 5.62026 5.80609 5.98609 6.21141 6.30854 6.49710 6.58879 6.72361 6.88398 7.12609 7.28257 7.46752 7.67514 7.84845 8.30827 8.89978 9.58097 10.52249 11.27944 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.004455 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.175026 B = 6283.586273 C = 7594.438621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.219 4.219 8 H 0.081 0.919 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.162 4.162 12 C 0.126 3.874 13 H 0.049 0.951 14 C 0.121 3.879 15 N -0.708 5.708 16 C 0.511 3.489 17 O -0.533 6.533 18 C 0.096 3.904 19 H 0.107 0.893 20 C -0.122 4.122 21 C -0.593 4.593 22 S 2.579 3.421 23 O -0.956 6.956 24 O -0.959 6.959 25 N -1.082 6.082 26 H 0.254 0.746 27 H 0.068 0.932 28 H 0.027 0.973 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.405 0.595 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.921 -5.590 -3.663 12.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.346 4.346 8 H 0.099 0.901 9 N -0.327 5.327 10 C 0.028 3.972 11 C -0.201 4.201 12 C 0.018 3.982 13 H 0.066 0.934 14 C -0.004 4.004 15 N -0.358 5.358 16 C 0.293 3.707 17 O -0.410 6.410 18 C -0.017 4.017 19 H 0.125 0.875 20 C -0.162 4.162 21 C -0.724 4.724 22 S 2.673 3.327 23 O -0.945 6.945 24 O -0.949 6.949 25 N -0.850 5.850 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.240 0.760 34 H 0.122 0.878 35 H 0.143 0.857 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 12.002 -5.808 -2.689 13.602 hybrid contribution -0.330 1.223 -0.630 1.415 sum 11.672 -4.585 -3.319 12.972 Atomic orbital electron populations 1.69841 1.05068 1.25437 1.55644 1.24828 0.95630 0.97468 1.02276 0.86215 0.78800 0.83932 0.77485 1.21611 1.21667 1.20544 1.18816 0.90484 0.81388 1.43910 0.90134 1.45656 1.02597 0.99905 1.84587 1.21973 0.88588 0.89098 0.97509 1.23677 0.96988 0.98996 1.00411 1.22429 0.91850 0.87676 0.96196 0.93358 1.21870 0.83249 0.97487 0.97786 1.45985 1.05724 1.55149 1.28991 1.20197 0.84392 0.80872 0.85229 1.90710 1.86403 1.40222 1.23615 1.21627 0.87643 0.92124 1.00264 0.87547 1.22675 0.95208 0.92331 1.05938 1.30841 1.08692 1.20052 1.12843 1.06106 0.73607 0.77752 0.75228 1.93638 1.79912 1.85731 1.35185 1.93629 1.64259 1.77419 1.59552 1.54943 1.21902 1.24718 1.83399 0.93564 0.91385 0.95519 0.92289 0.90200 0.92086 0.90921 0.75998 0.87770 0.85713 0.83565 0.83602 0.72069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.54 11.62 55.49 0.65 -24.89 16 2 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 3 Si 0.91 20.35 29.56 -169.99 -5.02 15.32 16 4 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 7 C -0.22 -5.37 10.54 -15.06 -0.16 -5.53 16 8 H 0.08 1.83 7.61 -52.49 -0.40 1.43 16 9 N -0.60 -13.50 3.65 -176.98 -0.65 -14.15 16 10 C 0.15 3.31 7.31 -8.51 -0.06 3.25 16 11 C -0.16 -2.72 8.03 -26.21 -0.21 -2.93 16 12 C 0.13 2.20 4.10 -72.38 -0.30 1.90 16 13 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 14 C 0.12 1.94 5.52 -4.04 -0.02 1.92 16 15 N -0.71 -10.10 5.33 -60.29 -0.32 -10.42 16 16 C 0.51 7.26 7.06 -10.99 -0.08 7.18 16 17 O -0.53 -9.52 16.38 5.56 0.09 -9.43 16 18 C 0.10 0.99 3.41 -68.22 -0.23 0.76 16 19 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 20 C -0.12 -1.12 6.09 -24.79 -0.15 -1.28 16 21 C -0.59 -4.20 7.51 38.54 0.29 -3.91 16 22 S 2.58 27.02 6.49 -107.50 -0.70 26.32 16 23 O -0.96 -13.77 18.13 -57.41 -1.04 -14.82 16 24 O -0.96 -12.56 18.13 -57.41 -1.04 -13.60 16 25 N -1.08 -11.71 6.31 -5.08 -0.03 -11.74 16 26 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.07 1.65 7.31 -51.93 -0.38 1.27 16 28 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.08 1.35 8.12 -51.93 -0.42 0.92 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.41 5.25 8.47 -40.82 -0.35 4.90 16 34 H 0.10 1.09 8.10 -51.93 -0.42 0.66 16 35 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.15 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.15 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.44 4.67 8.73 -40.34 -0.35 4.32 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -35.81 331.95 -9.34 -45.16 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -5.26 Total: 6.10 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -1.02 Total: 1.14 kcal Atomic # 7 Polarization: -60.85 SS G_CDS: -0.35 Total: -61.20 kcal Atomic # 8 Polarization: -35.85 SS G_CDS: -1.99 Total: -37.84 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 16 Polarization: 27.02 SS G_CDS: -0.70 Total: 26.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -35.81 -9.34 -45.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.443 kcal (2) G-P(sol) polarization free energy of solvation -35.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds