Wall clock time and date at job start Tue Mar 31 2020 03:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86802 * 119.99673 * 2 1 4 4 H 1.48507 * 109.47001 * 274.98655 * 3 2 1 5 5 H 1.48501 * 109.47380 * 34.98697 * 3 2 1 6 6 H 1.48499 * 109.47400 * 154.98789 * 3 2 1 7 7 C 1.38810 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00231 * 185.05706 * 7 2 1 9 9 N 1.36937 * 119.99490 * 5.05445 * 7 2 1 10 10 C 1.47061 * 136.06180 * 353.51685 * 9 7 2 11 11 C 1.53495 * 87.98896 * 207.15302 * 10 9 7 12 12 C 1.47076 * 136.05329 * 173.56044 * 9 7 2 13 13 H 1.09000 * 113.46787 * 267.68667 * 12 9 7 14 14 C 1.52998 * 113.46424 * 38.07117 * 12 9 7 15 15 N 1.46507 * 109.47047 * 285.48909 * 14 12 9 16 16 C 1.34774 * 119.99589 * 180.02562 * 15 14 12 17 17 O 1.21280 * 120.00700 * 359.97438 * 16 15 14 18 18 C 1.50699 * 119.99540 * 180.02562 * 16 15 14 19 19 H 1.09006 * 109.29332 * 318.22914 * 18 16 15 20 20 C 1.54062 * 109.35690 * 77.90869 * 18 16 15 21 21 C 1.55604 * 104.29748 * 165.38223 * 20 18 16 22 22 S 1.83454 * 100.72169 * 322.07961 * 21 20 18 23 23 O 1.42097 * 111.24985 * 270.72539 * 22 21 20 24 24 O 1.42100 * 111.24761 * 131.47452 * 22 21 20 25 25 N 1.47064 * 109.35780 * 198.54745 * 18 16 15 26 26 H 0.97000 * 119.99923 * 359.97438 * 1 2 3 27 27 H 1.09001 * 113.46742 * 321.93199 * 10 9 7 28 28 H 1.09002 * 113.46743 * 92.31356 * 10 9 7 29 29 H 1.09005 * 114.21002 * 220.34764 * 11 10 9 30 30 H 1.08996 * 114.20857 * 87.51166 * 11 10 9 31 31 H 1.08998 * 109.46881 * 165.49476 * 14 12 9 32 32 H 1.08999 * 109.47362 * 45.48928 * 14 12 9 33 33 H 0.96997 * 119.99682 * 0.02562 * 15 14 12 34 34 H 1.09001 * 110.47068 * 46.67776 * 20 18 16 35 35 H 1.09003 * 110.58156 * 284.13590 * 20 18 16 36 36 H 1.09001 * 111.16586 * 204.21907 * 21 20 18 37 37 H 1.08998 * 111.20654 * 79.96273 * 21 20 18 38 38 H 0.97003 * 126.30031 * 31.05206 * 25 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.3922 2.1073 -1.3949 5 1 1.5043 2.6200 0.8028 6 1 3.5965 1.4123 0.5920 7 6 2.0104 -1.2021 0.0005 8 1 3.0871 -1.2038 0.0830 9 7 1.3297 -2.3857 -0.1034 10 6 -0.0819 -2.7981 -0.1139 11 6 0.3668 -4.1560 0.4436 12 6 1.6887 -3.8041 -0.2529 13 1 1.7344 -4.1332 -1.2911 14 6 2.9268 -4.2071 0.5504 15 7 4.1271 -3.6847 -0.1075 16 6 5.3430 -3.9181 0.4250 17 8 5.4436 -4.5602 1.4490 18 6 6.5776 -3.3803 -0.2514 19 1 6.4863 -3.5169 -1.3290 20 6 6.7189 -1.8787 0.0628 21 6 8.1799 -1.5359 -0.3486 22 16 9.0520 -3.0577 0.1890 23 8 9.4909 -2.9510 1.5363 24 8 9.8997 -3.5552 -0.8372 25 7 7.7574 -4.1117 0.2343 26 1 -0.4850 0.8401 0.0004 27 1 -0.7053 -2.2300 0.5765 28 1 -0.5090 -2.8586 -1.1150 29 1 -0.1528 -5.0108 0.0106 30 1 0.4310 -4.1935 1.5311 31 1 2.9865 -5.2941 0.6051 32 1 2.8563 -3.7959 1.5574 33 1 4.0466 -3.1709 -0.9263 34 1 6.5699 -1.6963 1.1271 35 1 6.0105 -1.2957 -0.5258 36 1 8.5456 -0.6616 0.1900 37 1 8.2632 -1.3944 -1.4262 38 1 7.7803 -5.0372 0.5238 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039025311.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:55 Heat of formation + Delta-G solvation = -69.828204 kcal Electronic energy + Delta-G solvation = -23330.913731 eV Core-core repulsion = 19722.574166 eV Total energy + Delta-G solvation = -3608.339566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.13192 -39.82191 -38.15051 -37.50181 -36.94790 -35.54205 -34.18747 -32.70840 -30.09812 -29.70263 -27.34232 -25.34166 -24.06681 -23.21469 -21.58259 -20.93643 -20.57175 -19.24644 -18.46284 -18.24394 -17.54291 -17.05668 -16.98643 -16.64706 -16.07341 -15.93597 -15.69331 -15.43741 -14.94927 -14.70205 -14.38164 -14.23892 -13.69629 -13.44342 -13.28454 -13.23557 -13.10393 -12.99173 -12.89905 -12.63316 -12.54178 -12.51985 -12.26811 -11.82103 -11.59970 -11.56119 -11.26639 -10.91599 -10.79276 -10.42430 -10.00552 -8.83362 -7.82612 -5.13921 -0.76627 1.43401 1.50243 1.52184 1.59305 1.60269 2.20707 2.53082 2.60534 2.94519 3.34210 3.39527 3.45297 3.51526 3.72946 3.90873 3.97877 4.15336 4.27585 4.34468 4.39688 4.63354 4.68043 4.73133 4.79554 4.88805 4.92297 5.08869 5.14817 5.38441 5.46641 5.63478 5.77093 6.00191 6.02920 6.57374 6.97677 7.21046 7.70549 8.70445 9.36206 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.017046 B = 0.004455 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.175026 B = 6283.586273 C = 7594.438621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.074 4.074 3 Si 0.965 3.035 4 H -0.287 1.287 5 H -0.311 1.311 6 H -0.256 1.256 7 C -0.205 4.205 8 H 0.100 0.900 9 N -0.628 5.628 10 C 0.145 3.855 11 C -0.139 4.139 12 C 0.135 3.865 13 H 0.072 0.928 14 C 0.129 3.871 15 N -0.704 5.704 16 C 0.509 3.491 17 O -0.575 6.575 18 C 0.096 3.904 19 H 0.148 0.852 20 C -0.130 4.130 21 C -0.556 4.556 22 S 2.578 3.422 23 O -1.005 7.005 24 O -0.990 6.990 25 N -1.088 6.088 26 H 0.243 0.757 27 H 0.028 0.972 28 H 0.022 0.978 29 H 0.096 0.904 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.043 0.957 33 H 0.414 0.586 34 H 0.088 0.912 35 H 0.146 0.854 36 H 0.170 0.830 37 H 0.183 0.817 38 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.281 -5.641 -5.300 14.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.266 4.266 3 Si 0.794 3.206 4 H -0.214 1.214 5 H -0.239 1.239 6 H -0.180 1.180 7 C -0.333 4.333 8 H 0.117 0.883 9 N -0.354 5.354 10 C 0.019 3.981 11 C -0.177 4.177 12 C 0.029 3.971 13 H 0.090 0.910 14 C 0.004 3.996 15 N -0.355 5.355 16 C 0.294 3.706 17 O -0.454 6.454 18 C -0.015 4.015 19 H 0.165 0.835 20 C -0.170 4.170 21 C -0.690 4.690 22 S 2.677 3.323 23 O -0.994 6.994 24 O -0.979 6.979 25 N -0.854 5.854 26 H 0.052 0.948 27 H 0.047 0.953 28 H 0.040 0.960 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.251 0.749 34 H 0.107 0.893 35 H 0.164 0.836 36 H 0.188 0.812 37 H 0.201 0.799 38 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 13.423 -5.921 -4.339 15.299 hybrid contribution -0.812 1.172 -0.121 1.431 sum 12.610 -4.749 -4.459 14.194 Atomic orbital electron populations 1.70045 1.06702 1.25129 1.58777 1.25618 0.96327 1.00796 1.03899 0.85243 0.78438 0.79770 0.77109 1.21433 1.23860 1.17963 1.19324 0.91434 0.82092 1.40486 0.88278 1.45980 1.03355 1.01406 1.84641 1.21969 0.88036 0.91465 0.96666 1.23510 0.96327 0.97546 1.00339 1.22536 0.92640 0.84492 0.97417 0.91040 1.21605 0.83615 0.98311 0.96052 1.45920 1.05318 1.55123 1.29132 1.20851 0.85236 0.79917 0.84618 1.90698 1.87033 1.42129 1.25574 1.21903 0.85177 0.92546 1.01918 0.83505 1.22808 0.96952 0.91595 1.05613 1.30703 1.05608 1.17311 1.15357 1.05969 0.73554 0.78892 0.73920 1.93578 1.81205 1.86804 1.37808 1.93588 1.65737 1.78916 1.59676 1.54959 1.22196 1.24773 1.83467 0.94836 0.95299 0.96018 0.88520 0.90418 0.90410 0.93897 0.74933 0.89333 0.83601 0.81199 0.79923 0.72355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -54.97 11.62 21.65 0.25 -54.72 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 3 Si 0.97 41.41 29.56 68.60 2.03 43.44 16 4 H -0.29 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.31 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 7 C -0.21 -9.82 10.54 84.03 0.89 -8.93 16 8 H 0.10 4.23 7.61 -2.91 -0.02 4.20 16 9 N -0.63 -27.50 3.65 -713.85 -2.60 -30.11 16 10 C 0.14 6.20 7.31 83.18 0.61 6.81 16 11 C -0.14 -4.37 8.03 30.93 0.25 -4.12 16 12 C 0.14 4.37 4.10 41.79 0.17 4.54 16 13 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 14 C 0.13 3.88 5.52 86.38 0.48 4.36 16 15 N -0.70 -18.07 5.33 -463.06 -2.47 -20.54 16 16 C 0.51 13.33 7.06 87.66 0.62 13.95 16 17 O -0.58 -20.04 16.38 -3.03 -0.05 -20.09 16 18 C 0.10 1.68 3.41 44.50 0.15 1.83 16 19 H 0.15 1.42 8.14 -2.38 -0.02 1.40 16 20 C -0.13 -1.88 6.09 31.85 0.19 -1.68 16 21 C -0.56 -5.32 7.51 72.88 0.55 -4.77 16 22 S 2.58 49.89 6.49 -56.49 -0.37 49.52 16 23 O -1.00 -28.85 18.13 -127.77 -2.32 -31.16 16 24 O -0.99 -24.58 18.13 -127.77 -2.32 -26.90 16 25 N -1.09 -21.82 6.31 -169.99 -1.07 -22.89 16 26 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 27 H 0.03 1.45 7.31 -2.39 -0.02 1.43 16 28 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.41 9.16 8.47 -92.71 -0.79 8.37 16 34 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.17 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.18 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.44 9.09 8.73 -93.01 -0.81 8.28 16 Total: -1.00 -80.90 331.95 -5.05 -85.95 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -0.50 Total: 18.91 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 4.37 Total: 8.60 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -5.89 Total: -128.26 kcal Atomic # 8 Polarization: -73.47 SS G_CDS: -4.68 Total: -78.16 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Atomic # 16 Polarization: 49.89 SS G_CDS: -0.37 Total: 49.52 kcal Total: -80.90 -5.05 -85.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039025311.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.124 kcal (2) G-P(sol) polarization free energy of solvation -80.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds