Wall clock time and date at job start Tue Mar 31 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 119.99971 * 2 1 4 4 O 1.21285 * 120.00013 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00405 * 0.02562 * 3 2 1 6 6 H 1.09009 * 109.34131 * 319.29915 * 5 3 2 7 7 C 1.54061 * 109.35561 * 79.00619 * 5 3 2 8 8 C 1.55570 * 104.31333 * 165.44312 * 7 5 3 9 9 S 1.83453 * 100.68124 * 321.99217 * 8 7 5 10 10 O 1.42099 * 111.25297 * 270.77016 * 9 8 7 11 11 O 1.42103 * 111.35259 * 131.55657 * 9 8 7 12 12 N 1.47056 * 109.35876 * 199.58474 * 5 3 2 13 13 C 1.46500 * 120.00027 * 180.02562 * 2 1 3 14 14 C 1.53947 * 113.74297 * 59.99929 * 13 2 1 15 15 N 1.47584 * 86.11565 * 269.26043 * 14 13 2 16 16 C 1.36935 * 134.49069 * 155.35638 * 15 14 13 17 17 H 1.08000 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46831 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47112 * 119.99640 * 20 18 16 23 23 H 1.48497 * 109.47211 * 240.00381 * 20 18 16 24 24 C 1.47576 * 91.01498 * 335.35788 * 15 14 13 25 25 H 1.08996 * 109.46811 * 269.99543 * 1 2 3 26 26 H 1.08993 * 109.46959 * 29.99722 * 1 2 3 27 27 H 1.09001 * 109.47015 * 149.99708 * 1 2 3 28 28 H 1.09004 * 110.47136 * 284.08525 * 7 5 3 29 29 H 1.09000 * 110.46743 * 46.68602 * 7 5 3 30 30 H 1.09002 * 111.14184 * 204.16325 * 8 7 5 31 31 H 1.08991 * 111.22839 * 79.86433 * 8 7 5 32 32 H 0.97002 * 126.30768 * 30.74886 * 12 5 3 33 33 H 1.08997 * 113.01936 * 191.65726 * 13 2 1 34 34 H 1.09001 * 113.76955 * 23.56078 * 14 13 2 35 35 H 1.08997 * 113.77064 * 154.96154 * 14 13 2 36 36 H 0.96998 * 120.00287 * 179.97438 * 19 18 16 37 37 H 1.09003 * 113.77250 * 270.33779 * 24 15 14 38 38 H 1.08995 * 113.76824 * 138.94137 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5293 2.3953 -0.6698 7 6 0.8906 2.7756 1.4277 8 6 0.4807 4.2756 1.3820 9 16 1.7964 4.9548 0.2987 10 8 2.9255 5.3673 1.0564 11 8 1.2504 5.7684 -0.7305 12 7 2.2736 3.5481 -0.4646 13 6 2.1975 -1.2687 -0.0006 14 6 1.8972 -2.1573 -1.2213 15 7 0.8245 -2.7506 -0.3995 16 6 -0.3517 -3.3946 -0.6766 17 1 -0.6517 -3.5540 -1.7018 18 6 -1.1581 -3.8436 0.3603 19 7 -0.7924 -3.6498 1.6097 20 14 -2.7624 -4.7227 -0.0175 21 1 -2.9423 -4.8138 -1.4888 22 1 -2.7261 -6.0896 0.5618 23 1 -3.8938 -3.9642 0.5739 24 6 1.5287 -2.3710 0.8406 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 0.0297 2.1537 1.6729 29 1 1.6922 2.6207 2.1500 30 1 0.5182 4.7239 2.3749 31 1 -0.5039 4.4021 0.9320 32 1 3.0029 3.4573 -1.0977 33 1 3.2615 -1.1467 0.2022 34 1 1.5327 -1.6051 -2.0876 35 1 2.6994 -2.8536 -1.4659 36 1 -1.3560 -3.9632 2.3342 37 1 2.2226 -3.1301 1.2018 38 1 0.8699 -1.9895 1.6206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044307478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:43 Heat of formation + Delta-G solvation = -21.950349 kcal Electronic energy + Delta-G solvation = -23730.676890 eV Core-core repulsion = 20124.413464 eV Total energy + Delta-G solvation = -3606.263426 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.28020 -38.16101 -37.21414 -36.40783 -36.01017 -34.20122 -32.16783 -31.93991 -28.31674 -27.06078 -26.19674 -24.89461 -23.56761 -22.56755 -20.37924 -19.74984 -18.49167 -17.83679 -17.59983 -16.87940 -16.34268 -16.00958 -15.68143 -15.09098 -15.01802 -14.89604 -14.19243 -13.81856 -13.75529 -13.56163 -12.98970 -12.75586 -12.67597 -12.34391 -12.28812 -12.14877 -12.09965 -11.80406 -11.66480 -11.40937 -11.35442 -10.97703 -10.82157 -10.67334 -10.25304 -10.05811 -9.86645 -9.65555 -9.42693 -8.91287 -8.18068 -7.00192 -5.91194 -3.24652 0.00939 2.30095 2.65861 3.19561 3.28594 3.35797 3.37370 3.37717 3.70216 4.03557 4.20470 4.32836 4.49148 4.60750 4.89863 4.99533 5.05572 5.16267 5.35039 5.38359 5.45281 5.47045 5.63174 6.01201 6.05260 6.09998 6.35555 6.41242 6.60858 6.81851 6.91470 7.06401 7.18305 7.42192 7.75161 7.84050 8.32342 8.90562 9.56281 10.44265 11.24851 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003771 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.416136 B = 7422.782544 C = 7911.385403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.571 5.571 3 C 0.511 3.489 4 O -0.537 6.537 5 C 0.094 3.906 6 H 0.109 0.891 7 C -0.120 4.120 8 C -0.594 4.594 9 S 2.579 3.421 10 O -0.957 6.957 11 O -0.959 6.959 12 N -1.082 6.082 13 C 0.086 3.914 14 C 0.106 3.894 15 N -0.608 5.608 16 C -0.227 4.227 17 H 0.080 0.920 18 C -0.003 4.003 19 N -0.918 5.918 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.154 3.846 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.103 0.897 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.438 0.562 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.254 0.746 37 H 0.038 0.962 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.663 13.669 -0.209 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.302 5.302 3 C 0.295 3.705 4 O -0.414 6.414 5 C -0.018 4.018 6 H 0.127 0.873 7 C -0.159 4.159 8 C -0.724 4.724 9 S 2.673 3.327 10 O -0.946 6.946 11 O -0.948 6.948 12 N -0.850 5.850 13 C -0.019 4.019 14 C -0.021 4.021 15 N -0.335 5.335 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.200 4.200 19 N -0.564 5.564 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.028 3.972 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.137 0.863 28 H 0.141 0.859 29 H 0.121 0.879 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.279 0.721 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.303 14.456 -0.232 14.516 hybrid contribution -1.029 -1.478 -0.167 1.808 sum 0.274 12.978 -0.400 12.987 Atomic orbital electron populations 1.22181 0.78343 1.04640 1.02729 1.47442 1.07647 1.04713 1.70358 1.20183 0.87992 0.84749 0.77545 1.90690 1.13456 1.86919 1.50351 1.21695 0.93859 0.89145 0.97068 0.87339 1.22636 1.04682 0.93625 0.94997 1.30828 1.17867 1.06898 1.16842 1.06114 0.76942 0.73338 0.76329 1.93633 1.47734 1.80658 1.72550 1.93632 1.80199 1.66111 1.54858 1.54951 1.45847 1.23458 1.60711 1.22981 0.95687 0.83333 0.99889 1.23013 0.91449 0.93110 0.94530 1.46203 1.17693 1.68074 1.01579 1.19052 0.93373 1.30311 0.92685 0.90207 1.24752 0.99015 1.01047 0.95162 1.69813 1.38126 1.50834 0.97655 0.86112 0.83206 0.79303 0.77506 1.20479 1.21760 1.21648 1.22628 0.92531 0.90312 0.91761 0.92374 0.92771 0.86286 0.85917 0.87895 0.83611 0.83613 0.72052 0.88682 0.93522 0.93809 0.93585 0.94410 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.94 8.53 59.85 0.51 1.45 16 2 N -0.57 -9.04 3.09 -175.75 -0.54 -9.58 16 3 C 0.51 7.61 6.91 -10.99 -0.08 7.53 16 4 O -0.54 -9.69 15.89 5.55 0.09 -9.60 16 5 C 0.09 1.01 2.68 -68.22 -0.18 0.83 16 6 H 0.11 0.94 6.34 -51.92 -0.33 0.61 16 7 C -0.12 -1.00 5.90 -24.81 -0.15 -1.15 16 8 C -0.59 -3.72 7.51 38.52 0.29 -3.43 16 9 S 2.58 26.24 6.49 -107.50 -0.70 25.54 16 10 O -0.96 -13.30 18.13 -57.43 -1.04 -14.35 16 11 O -0.96 -12.48 18.14 -57.43 -1.04 -13.52 16 12 N -1.08 -11.91 6.31 -5.09 -0.03 -11.94 16 13 C 0.09 1.55 4.51 -70.14 -0.32 1.23 16 14 C 0.11 2.01 8.41 -2.97 -0.03 1.99 16 15 N -0.61 -13.79 2.29 -178.09 -0.41 -14.20 16 16 C -0.23 -5.68 9.74 -15.06 -0.15 -5.83 16 17 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 18 C 0.00 -0.07 5.50 -17.43 -0.10 -0.16 16 19 N -0.92 -24.58 11.38 55.49 0.63 -23.95 16 20 Si 0.91 20.38 29.55 -169.99 -5.02 15.35 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.15 3.27 6.75 -2.98 -0.02 3.25 16 25 H 0.06 0.85 7.82 -51.93 -0.41 0.44 16 26 H 0.05 0.59 5.95 -51.93 -0.31 0.28 16 27 H 0.12 2.22 5.33 -51.93 -0.28 1.94 16 28 H 0.12 0.86 7.26 -51.93 -0.38 0.49 16 29 H 0.10 0.92 8.10 -51.93 -0.42 0.50 16 30 H 0.15 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.15 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.44 4.83 8.74 -40.34 -0.35 4.48 16 33 H 0.10 1.70 7.25 -51.93 -0.38 1.33 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.08 1.85 6.83 -51.93 -0.35 1.50 16 LS Contribution 319.52 15.07 4.82 4.82 Total: -1.00 -34.44 319.52 -8.32 -42.77 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -4.86 Total: 2.94 kcal Atomic # 6 Polarization: 5.93 SS G_CDS: -0.21 Total: 5.72 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.35 Total: -59.67 kcal Atomic # 8 Polarization: -35.47 SS G_CDS: -1.99 Total: -37.46 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 26.24 SS G_CDS: -0.70 Total: 25.54 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.44 -8.32 -42.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044307478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.816 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds