Wall clock time and date at job start Tue Mar 31 2020 04:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34770 * 119.99971 * 2 1 4 4 O 1.21285 * 120.00013 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.00405 * 0.02562 * 3 2 1 6 6 H 1.09009 * 109.34131 * 319.29915 * 5 3 2 7 7 C 1.54061 * 109.35561 * 79.00619 * 5 3 2 8 8 C 1.55570 * 104.31333 * 165.44312 * 7 5 3 9 9 S 1.83453 * 100.68124 * 321.99217 * 8 7 5 10 10 O 1.42099 * 111.25297 * 270.77016 * 9 8 7 11 11 O 1.42103 * 111.35259 * 131.55657 * 9 8 7 12 12 N 1.47056 * 109.35876 * 199.58474 * 5 3 2 13 13 C 1.46500 * 120.00027 * 180.02562 * 2 1 3 14 14 C 1.53947 * 113.74297 * 59.99929 * 13 2 1 15 15 N 1.47584 * 86.11565 * 269.26043 * 14 13 2 16 16 C 1.36935 * 134.49069 * 155.35638 * 15 14 13 17 17 H 1.08000 * 120.00181 * 0.02562 * 16 15 14 18 18 C 1.38813 * 119.99885 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00202 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00152 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.46831 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47112 * 119.99640 * 20 18 16 23 23 H 1.48497 * 109.47211 * 240.00381 * 20 18 16 24 24 C 1.47576 * 91.01498 * 335.35788 * 15 14 13 25 25 H 1.08996 * 109.46811 * 269.99543 * 1 2 3 26 26 H 1.08993 * 109.46959 * 29.99722 * 1 2 3 27 27 H 1.09001 * 109.47015 * 149.99708 * 1 2 3 28 28 H 1.09004 * 110.47136 * 284.08525 * 7 5 3 29 29 H 1.09000 * 110.46743 * 46.68602 * 7 5 3 30 30 H 1.09002 * 111.14184 * 204.16325 * 8 7 5 31 31 H 1.08991 * 111.22839 * 79.86433 * 8 7 5 32 32 H 0.97002 * 126.30768 * 30.74886 * 12 5 3 33 33 H 1.08997 * 113.01936 * 191.65726 * 13 2 1 34 34 H 1.09001 * 113.76955 * 23.56078 * 14 13 2 35 35 H 1.08997 * 113.77064 * 154.96154 * 14 13 2 36 36 H 0.96998 * 120.00287 * 179.97438 * 19 18 16 37 37 H 1.09003 * 113.77250 * 270.33779 * 24 15 14 38 38 H 1.08995 * 113.76824 * 138.94137 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 0.0006 6 1 0.5293 2.3953 -0.6698 7 6 0.8906 2.7756 1.4277 8 6 0.4807 4.2756 1.3820 9 16 1.7964 4.9548 0.2987 10 8 2.9255 5.3673 1.0564 11 8 1.2504 5.7684 -0.7305 12 7 2.2736 3.5481 -0.4646 13 6 2.1975 -1.2687 -0.0006 14 6 1.8972 -2.1573 -1.2213 15 7 0.8245 -2.7506 -0.3995 16 6 -0.3517 -3.3946 -0.6766 17 1 -0.6517 -3.5540 -1.7018 18 6 -1.1581 -3.8436 0.3603 19 7 -0.7924 -3.6498 1.6097 20 14 -2.7624 -4.7227 -0.0175 21 1 -2.9423 -4.8138 -1.4888 22 1 -2.7261 -6.0896 0.5618 23 1 -3.8938 -3.9642 0.5739 24 6 1.5287 -2.3710 0.8406 25 1 -0.3633 -0.0001 1.0276 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3633 -0.8900 -0.5139 28 1 0.0297 2.1537 1.6729 29 1 1.6922 2.6207 2.1500 30 1 0.5182 4.7239 2.3749 31 1 -0.5039 4.4021 0.9320 32 1 3.0029 3.4573 -1.0977 33 1 3.2615 -1.1467 0.2022 34 1 1.5327 -1.6051 -2.0876 35 1 2.6994 -2.8536 -1.4659 36 1 -1.3560 -3.9632 2.3342 37 1 2.2226 -3.1301 1.2018 38 1 0.8699 -1.9895 1.6206 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044307478.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:42 Heat of formation + Delta-G solvation = -49.842498 kcal Electronic energy + Delta-G solvation = -23731.886385 eV Core-core repulsion = 20124.413464 eV Total energy + Delta-G solvation = -3607.472921 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.52067 -39.57395 -38.10930 -37.39663 -36.91005 -35.59469 -33.97892 -32.67390 -29.93545 -28.06535 -27.54296 -26.53344 -24.92387 -23.63396 -21.65004 -20.59799 -19.80750 -18.98664 -18.55021 -18.45410 -17.38420 -17.16042 -16.79599 -16.58838 -16.20910 -15.97723 -15.57828 -15.20905 -14.71282 -14.43875 -14.35322 -14.09789 -13.94901 -13.37725 -13.23982 -13.18245 -13.07879 -13.06262 -12.96636 -12.82075 -12.73642 -12.46040 -12.35714 -11.95727 -11.57176 -11.52082 -11.43923 -11.13615 -10.83078 -10.36448 -9.53663 -8.83332 -7.84602 -5.17948 -0.73296 1.40763 1.50422 1.54060 1.58818 1.61429 2.03994 2.51040 2.64337 2.91052 3.30070 3.36419 3.44641 3.47286 3.62776 3.84209 3.89666 4.18112 4.29800 4.45637 4.53416 4.57186 4.66246 4.79286 4.81000 4.87367 4.89727 4.93966 5.12717 5.29457 5.43824 5.53684 5.73471 5.95253 6.03954 6.53757 6.97503 7.11152 7.65736 8.59460 9.31145 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027010 B = 0.003771 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.416136 B = 7422.782544 C = 7911.385403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.574 5.574 3 C 0.511 3.489 4 O -0.573 6.573 5 C 0.095 3.905 6 H 0.139 0.861 7 C -0.125 4.125 8 C -0.551 4.551 9 S 2.575 3.425 10 O -1.003 7.003 11 O -0.992 6.992 12 N -1.089 6.089 13 C 0.106 3.894 14 C 0.109 3.891 15 N -0.624 5.624 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.050 4.050 19 N -0.945 5.945 20 Si 0.967 3.033 21 H -0.270 1.270 22 H -0.302 1.302 23 H -0.288 1.288 24 C 0.155 3.845 25 H 0.058 0.942 26 H 0.099 0.901 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.095 0.905 30 H 0.176 0.824 31 H 0.182 0.818 32 H 0.435 0.565 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.248 0.752 37 H 0.024 0.976 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.110 14.695 -0.382 14.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.304 5.304 3 C 0.298 3.702 4 O -0.452 6.452 5 C -0.017 4.017 6 H 0.156 0.844 7 C -0.165 4.165 8 C -0.686 4.686 9 S 2.674 3.326 10 O -0.992 6.992 11 O -0.981 6.981 12 N -0.855 5.855 13 C 0.000 4.000 14 C -0.017 4.017 15 N -0.351 5.351 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.244 4.244 19 N -0.594 5.594 20 Si 0.797 3.203 21 H -0.195 1.195 22 H -0.230 1.230 23 H -0.215 1.215 24 C 0.029 3.971 25 H 0.077 0.923 26 H 0.117 0.883 27 H 0.100 0.900 28 H 0.164 0.836 29 H 0.114 0.886 30 H 0.193 0.807 31 H 0.200 0.800 32 H 0.275 0.725 33 H 0.115 0.885 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.057 0.943 37 H 0.041 0.959 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.441 15.520 -0.457 15.533 hybrid contribution -0.452 -1.830 -0.120 1.889 sum -0.893 13.690 -0.576 13.731 Atomic orbital electron populations 1.22160 0.77382 1.05011 1.02901 1.47480 1.08136 1.04203 1.70589 1.20887 0.87761 0.85589 0.76010 1.90678 1.15285 1.87496 1.51731 1.21961 0.93866 0.86374 0.99486 0.84353 1.22785 1.05384 0.95297 0.93032 1.30678 1.16646 1.04304 1.16941 1.06068 0.77371 0.72961 0.76186 1.93576 1.50886 1.81640 1.73148 1.93588 1.80542 1.67342 1.56678 1.55012 1.46011 1.23790 1.60660 1.22599 0.95704 0.83777 0.97931 1.23108 0.90525 0.93163 0.94920 1.46371 1.18004 1.67842 1.02898 1.19297 0.94229 1.29338 0.92681 0.90171 1.25370 1.01696 1.02268 0.95095 1.69965 1.39036 1.52149 0.98200 0.85187 0.80112 0.77446 0.77568 1.19495 1.22993 1.21494 1.22504 0.92032 0.91230 0.91377 0.92316 0.88264 0.89973 0.83570 0.88623 0.80663 0.80042 0.72494 0.88529 0.92602 0.93013 0.94271 0.95871 0.92126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.83 8.53 127.77 1.09 2.92 16 2 N -0.57 -17.22 3.09 -828.33 -2.56 -19.78 16 3 C 0.51 14.29 6.91 87.66 0.61 14.90 16 4 O -0.57 -20.28 15.89 -3.05 -0.05 -20.33 16 5 C 0.09 1.74 2.68 44.50 0.12 1.86 16 6 H 0.14 1.73 6.34 -2.38 -0.02 1.72 16 7 C -0.13 -1.59 5.90 31.84 0.19 -1.40 16 8 C -0.55 -4.26 7.51 72.87 0.55 -3.71 16 9 S 2.58 48.08 6.49 -56.49 -0.37 47.71 16 10 O -1.00 -27.60 18.13 -127.76 -2.32 -29.92 16 11 O -0.99 -24.55 18.14 -127.76 -2.32 -26.87 16 12 N -1.09 -22.32 6.31 -170.01 -1.07 -23.39 16 13 C 0.11 3.75 4.51 46.75 0.21 3.96 16 14 C 0.11 4.06 8.41 86.48 0.73 4.79 16 15 N -0.62 -28.19 2.29 -717.35 -1.64 -29.83 16 16 C -0.23 -11.31 9.74 84.03 0.82 -10.49 16 17 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 18 C -0.05 -2.56 5.50 84.86 0.47 -2.09 16 19 N -0.94 -51.06 11.38 21.65 0.25 -50.81 16 20 Si 0.97 41.68 29.55 68.60 2.03 43.71 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 22 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16 23 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 24 C 0.15 6.66 6.75 86.48 0.58 7.24 16 25 H 0.06 1.58 7.82 -2.39 -0.02 1.56 16 26 H 0.10 1.73 5.95 -2.39 -0.01 1.72 16 27 H 0.08 2.95 5.33 -2.39 -0.01 2.93 16 28 H 0.15 1.29 7.26 -2.39 -0.02 1.28 16 29 H 0.10 1.43 8.10 -2.39 -0.02 1.41 16 30 H 0.18 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.18 0.30 8.14 -2.39 -0.02 0.29 16 32 H 0.44 9.44 8.74 -93.01 -0.81 8.63 16 33 H 0.10 3.43 7.25 -2.39 -0.02 3.42 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.25 13.19 8.31 -92.71 -0.77 12.42 16 37 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 2.84 6.83 -2.39 -0.02 2.83 16 Total: -1.00 -76.42 319.52 -2.41 -78.83 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.29 Total: 12.70 kcal Atomic # 6 Polarization: 12.62 SS G_CDS: 5.36 Total: 17.98 kcal Atomic # 7 Polarization: -118.78 SS G_CDS: -5.03 Total: -123.81 kcal Atomic # 8 Polarization: -72.44 SS G_CDS: -4.68 Total: -77.12 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: 48.08 SS G_CDS: -0.37 Total: 47.71 kcal Total: -76.42 -2.41 -78.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044307478.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.987 kcal (2) G-P(sol) polarization free energy of solvation -76.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds