Wall clock time and date at job start Tue Mar 31 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34774 * 120.00036 * 2 1 4 4 O 1.21278 * 119.99773 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99832 * 359.97438 * 3 2 1 6 6 H 1.08999 * 109.35215 * 40.70349 * 5 3 2 7 7 C 1.54063 * 109.35659 * 280.98522 * 5 3 2 8 8 C 1.55611 * 104.29604 * 194.62359 * 7 5 3 9 9 S 1.83454 * 100.72415 * 37.91897 * 8 7 5 10 10 O 1.42093 * 111.24900 * 89.27312 * 9 8 7 11 11 O 1.42101 * 111.24727 * 228.37471 * 9 8 7 12 12 N 1.47068 * 109.35480 * 160.41621 * 5 3 2 13 13 C 1.46504 * 119.99513 * 179.97438 * 2 1 3 14 14 C 1.53497 * 114.20629 * 299.99926 * 13 2 1 15 15 N 1.47070 * 87.98301 * 87.72301 * 14 13 2 16 16 C 1.36932 * 136.05620 * 207.08686 * 15 14 13 17 17 H 1.08001 * 119.99985 * 7.86814 * 16 15 14 18 18 C 1.38807 * 120.00215 * 187.87468 * 16 15 14 19 19 N 1.31623 * 120.00393 * 195.16408 * 18 16 15 20 20 Si 1.86802 * 119.99711 * 15.16025 * 18 16 15 21 21 H 1.48498 * 109.47037 * 269.99947 * 20 18 16 22 22 H 1.48492 * 109.47337 * 30.00170 * 20 18 16 23 23 H 1.48500 * 109.47086 * 150.00553 * 20 18 16 24 24 C 1.47068 * 87.88415 * 27.33811 * 15 14 13 25 25 H 1.09001 * 109.47758 * 270.00080 * 1 2 3 26 26 H 1.09003 * 109.46949 * 30.00599 * 1 2 3 27 27 H 1.09002 * 109.47604 * 149.99612 * 1 2 3 28 28 H 1.09004 * 110.46934 * 313.31998 * 7 5 3 29 29 H 1.08992 * 110.47086 * 75.79040 * 7 5 3 30 30 H 1.08998 * 111.16628 * 155.78453 * 8 7 5 31 31 H 1.09000 * 111.16708 * 280.05139 * 8 7 5 32 32 H 0.97006 * 126.30257 * 329.17071 * 12 5 3 33 33 H 1.09008 * 113.27693 * 166.93987 * 13 2 1 34 34 H 1.08996 * 113.46841 * 332.93826 * 14 13 2 35 35 H 1.08998 * 113.51535 * 202.50802 * 14 13 2 36 36 H 0.96998 * 119.99684 * 354.90053 * 19 18 16 37 37 H 1.09005 * 113.46482 * 87.44223 * 24 15 14 38 38 H 1.09000 * 113.46807 * 217.87726 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.5293 2.3953 0.6698 7 6 0.8907 2.7756 -1.4277 8 6 0.4823 4.2765 -1.3819 9 16 1.7967 4.9550 -0.2968 10 8 2.9267 5.3677 -1.0530 11 8 1.2474 5.7697 0.7297 12 7 2.2736 3.5481 0.4646 13 6 2.1974 -1.2688 0.0006 14 6 1.9058 -2.1633 1.2134 15 7 0.7771 -2.7292 0.4592 16 6 -0.4242 -3.3086 0.7692 17 1 -0.7729 -3.3150 1.7914 18 6 -1.1940 -3.8877 -0.2302 19 7 -2.4586 -4.1741 -0.0044 20 14 -0.4349 -4.2605 -1.8959 21 1 -0.6029 -3.0870 -2.7902 22 1 1.0115 -4.5511 -1.7269 23 1 -1.1101 -5.4398 -2.4947 24 6 1.5094 -2.4047 -0.7742 25 1 -0.3635 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6923 2.6207 -2.1500 29 1 0.0313 2.1521 -1.6739 30 1 0.5208 4.7253 -2.3745 31 1 -0.5029 4.4028 -0.9330 32 1 3.0022 3.4575 1.0986 33 1 3.2576 -1.1544 -0.2258 34 1 1.6005 -1.6070 2.0996 35 1 2.6951 -2.8859 1.4207 36 1 -2.8334 -4.0495 0.8815 37 1 2.1946 -3.1907 -1.0918 38 1 0.8662 -2.0541 -1.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044307492.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:48 Heat of formation + Delta-G solvation = -14.426547 kcal Electronic energy + Delta-G solvation = -23805.185432 eV Core-core repulsion = 20199.248263 eV Total energy + Delta-G solvation = -3605.937170 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 3.13 seconds Orbital eigenvalues (eV) -40.52734 -38.60299 -37.28487 -36.56590 -36.08834 -34.46337 -32.43600 -32.04618 -28.65417 -27.21327 -26.38522 -25.39388 -23.49491 -22.31588 -20.50294 -19.84905 -18.79076 -17.99782 -17.71410 -17.44272 -16.52361 -16.25724 -15.84734 -15.37419 -15.16331 -14.89873 -14.34971 -14.03108 -13.85921 -13.69736 -13.41524 -13.26747 -12.86499 -12.51778 -12.39158 -12.29209 -12.20983 -12.01631 -11.83295 -11.59573 -11.44788 -10.96897 -10.87579 -10.69762 -10.32975 -10.16213 -9.76529 -9.56574 -9.34451 -8.82534 -8.35901 -7.32086 -6.42216 -3.36116 -0.06298 2.19688 2.49784 3.00512 3.27853 3.29683 3.38403 3.51569 3.58218 3.94510 4.09958 4.34344 4.45682 4.50669 4.63348 4.81405 4.94420 5.01504 5.07307 5.17531 5.27093 5.33465 5.52549 5.70544 5.77452 5.88366 6.11558 6.12017 6.22891 6.28957 6.51227 6.79421 6.86075 6.97425 7.53460 8.11962 8.13280 8.84730 9.36754 10.23792 11.06773 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027829 B = 0.003944 C = 0.003796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.893494 B = 7097.100074 C = 7373.938214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.575 5.575 3 C 0.514 3.486 4 O -0.532 6.532 5 C 0.096 3.904 6 H 0.110 0.890 7 C -0.123 4.123 8 C -0.594 4.594 9 S 2.580 3.420 10 O -0.956 6.956 11 O -0.957 6.957 12 N -1.082 6.082 13 C 0.097 3.903 14 C 0.106 3.894 15 N -0.621 5.621 16 C -0.304 4.304 17 H 0.082 0.918 18 C -0.021 4.021 19 N -0.929 5.929 20 Si 1.058 2.942 21 H -0.294 1.294 22 H -0.282 1.282 23 H -0.295 1.295 24 C 0.091 3.909 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.124 0.876 30 H 0.147 0.853 31 H 0.147 0.853 32 H 0.439 0.561 33 H 0.107 0.893 34 H 0.048 0.952 35 H 0.047 0.953 36 H 0.262 0.738 37 H 0.059 0.941 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 15.077 -3.247 16.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.306 5.306 3 C 0.299 3.701 4 O -0.409 6.409 5 C -0.017 4.017 6 H 0.127 0.873 7 C -0.163 4.163 8 C -0.725 4.725 9 S 2.674 3.326 10 O -0.945 6.945 11 O -0.946 6.946 12 N -0.850 5.850 13 C -0.008 4.008 14 C -0.022 4.022 15 N -0.350 5.350 16 C -0.430 4.430 17 H 0.100 0.900 18 C -0.221 4.221 19 N -0.571 5.571 20 Si 0.890 3.110 21 H -0.222 1.222 22 H -0.208 1.208 23 H -0.222 1.222 24 C -0.035 4.035 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.121 0.879 28 H 0.122 0.878 29 H 0.142 0.858 30 H 0.165 0.835 31 H 0.165 0.835 32 H 0.280 0.720 33 H 0.125 0.875 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.590 15.344 -4.584 16.962 hybrid contribution 0.153 -0.443 1.703 1.766 sum 5.743 14.901 -2.882 16.227 Atomic orbital electron populations 1.22068 0.78089 1.03679 1.03114 1.47392 1.07675 1.04627 1.70942 1.20202 0.87979 0.84639 0.77261 1.90698 1.13410 1.86897 1.49863 1.21657 0.93943 0.88943 0.97108 0.87265 1.22715 1.04690 0.93874 0.94997 1.30849 1.18025 1.06638 1.16989 1.06085 0.76899 0.73302 0.76332 1.93634 1.47676 1.80603 1.72580 1.93639 1.80054 1.65928 1.55007 1.54949 1.45864 1.23415 1.60747 1.22558 0.95774 0.82828 0.99663 1.22805 0.90756 0.93562 0.95055 1.46437 1.14972 1.72429 1.01146 1.20125 0.91334 1.34778 0.96792 0.90046 1.25723 0.95232 0.97621 1.03538 1.70907 1.10695 1.51952 1.23567 0.83829 0.75027 0.76681 0.75476 1.22164 1.20831 1.22213 1.23104 0.94302 0.93638 0.92444 0.92041 0.92324 0.87860 0.87806 0.85813 0.83527 0.83515 0.71983 0.87510 0.93406 0.93582 0.92746 0.92379 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 9.01 59.85 0.54 1.56 16 2 N -0.58 -8.46 3.12 -173.56 -0.54 -9.00 16 3 C 0.51 7.10 6.91 -10.99 -0.08 7.03 16 4 O -0.53 -8.94 15.91 5.56 0.09 -8.85 16 5 C 0.10 0.95 2.58 -68.22 -0.18 0.78 16 6 H 0.11 0.88 7.24 -51.93 -0.38 0.50 16 7 C -0.12 -0.91 5.80 -24.79 -0.14 -1.05 16 8 C -0.59 -3.32 7.51 38.55 0.29 -3.04 16 9 S 2.58 24.77 6.49 -107.50 -0.70 24.07 16 10 O -0.96 -12.70 18.13 -57.43 -1.04 -13.74 16 11 O -0.96 -12.06 18.14 -57.43 -1.04 -13.10 16 12 N -1.08 -11.17 6.30 -5.08 -0.03 -11.20 16 13 C 0.10 1.59 4.67 -67.68 -0.32 1.28 16 14 C 0.11 1.93 8.31 -8.50 -0.07 1.86 16 15 N -0.62 -13.48 2.33 -184.62 -0.43 -13.92 16 16 C -0.30 -7.85 10.65 -15.06 -0.16 -8.01 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 18 C -0.02 -0.58 5.50 -17.43 -0.10 -0.68 16 19 N -0.93 -27.17 13.70 55.49 0.76 -26.41 16 20 Si 1.06 24.44 25.50 -169.99 -4.34 20.10 16 21 H -0.29 -6.37 6.97 56.52 0.39 -5.98 16 22 H -0.28 -6.09 5.66 56.52 0.32 -5.77 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 C 0.09 1.72 4.64 -8.37 -0.04 1.68 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 26 H 0.06 0.57 4.68 -51.93 -0.24 0.33 16 27 H 0.10 1.82 5.41 -51.93 -0.28 1.54 16 28 H 0.10 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.12 0.73 6.27 -51.93 -0.33 0.40 16 30 H 0.15 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.15 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.44 4.54 8.74 -40.30 -0.35 4.19 16 33 H 0.11 1.68 7.29 -51.92 -0.38 1.31 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.26 7.61 8.73 -40.82 -0.36 7.25 16 37 H 0.06 1.08 7.02 -51.93 -0.36 0.71 16 38 H 0.06 1.07 5.38 -51.93 -0.28 0.79 16 LS Contribution 312.58 15.07 4.71 4.71 Total: -1.00 -35.97 312.58 -7.61 -43.58 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -4.80 Total: 2.35 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.25 Total: 1.40 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.24 Total: -60.53 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.99 Total: -35.69 kcal Atomic # 14 Polarization: 24.44 SS G_CDS: -4.34 Total: 20.10 kcal Atomic # 16 Polarization: 24.77 SS G_CDS: -0.70 Total: 24.07 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.97 -7.61 -43.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044307492.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.153 kcal (2) G-P(sol) polarization free energy of solvation -35.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.13 seconds