Wall clock time and date at job start Tue Mar 31 2020 04:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34949 * 126.03690 * 2 1 4 4 C 1.35316 * 107.74344 * 180.14699 * 3 2 1 5 5 C 1.50702 * 126.04052 * 179.87696 * 4 3 2 6 6 H 1.09005 * 109.46989 * 24.71000 * 5 4 3 7 7 O 1.42899 * 109.47421 * 144.71376 * 5 4 3 8 8 C 1.53001 * 109.47071 * 264.71720 * 5 4 3 9 9 N 1.46498 * 109.47089 * 179.97438 * 8 5 4 10 10 S 1.65602 * 119.99612 * 164.71987 * 9 8 5 11 11 O 1.42109 * 104.27511 * 181.34803 * 10 9 8 12 12 O 1.42098 * 104.28120 * 309.20801 * 10 9 8 13 13 C 1.81394 * 104.44973 * 65.28269 * 10 9 8 14 14 C 1.53003 * 109.47387 * 179.97438 * 13 10 9 15 15 C 1.50707 * 109.47138 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99608 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99869 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99869 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00166 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47285 * 89.99841 * 19 17 15 21 21 H 1.48504 * 109.47506 * 210.00094 * 19 17 15 22 22 H 1.48502 * 109.47051 * 330.00121 * 19 17 15 23 23 C 1.39870 * 107.92101 * 359.61264 * 4 3 2 24 24 N 1.30835 * 108.20347 * 0.24149 * 23 4 3 25 25 H 1.09000 * 109.47116 * 270.25608 * 1 2 3 26 26 H 1.08998 * 109.47218 * 30.26031 * 1 2 3 27 27 H 1.09003 * 109.47063 * 150.25818 * 1 2 3 28 28 H 1.07998 * 126.12998 * 0.02562 * 3 2 1 29 29 H 0.96701 * 113.99981 * 60.00148 * 7 5 4 30 30 H 1.08996 * 109.47377 * 59.99679 * 8 5 4 31 31 H 1.08999 * 109.46886 * 299.99817 * 8 5 4 32 32 H 0.97001 * 120.00384 * 345.00465 * 9 8 5 33 33 H 1.09009 * 109.47044 * 299.99503 * 13 10 9 34 34 H 1.09001 * 109.47747 * 59.99183 * 13 10 9 35 35 H 1.09000 * 109.46375 * 299.99213 * 14 13 10 36 36 H 1.08993 * 109.47045 * 59.99537 * 14 13 10 37 37 H 0.97007 * 119.99442 * 180.02562 * 18 17 15 38 38 H 1.08000 * 125.89768 * 180.26251 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6665 -0.0033 5 6 4.7680 1.5452 -0.0071 6 1 4.5200 2.5158 0.4226 7 8 5.7984 0.9299 0.7686 8 6 5.2558 1.7339 -1.4450 9 7 6.4457 2.5886 -1.4488 10 16 7.4084 2.6615 -2.7942 11 8 8.4589 3.5448 -2.4259 12 8 7.6718 1.3016 -3.1110 13 6 6.3561 3.4184 -4.0632 14 6 7.1420 3.5423 -5.3701 15 6 6.2674 4.1706 -6.4245 16 1 5.2525 4.4527 -6.1864 17 6 6.7631 4.3850 -7.6931 18 7 7.9992 4.0418 -7.9828 19 14 5.6794 5.1643 -8.9998 20 1 5.8369 6.6404 -8.9578 21 1 6.0793 4.6618 -10.3388 22 1 4.2605 4.8104 -8.7418 23 6 3.5346 -0.7321 0.0036 24 7 2.2891 -1.1328 0.0056 25 1 -0.3633 0.0046 1.0276 26 1 -0.3633 0.8876 -0.5179 27 1 -0.3633 -0.8923 -0.5098 28 1 1.9282 2.1193 0.0004 29 1 6.0700 0.0608 0.4431 30 1 4.4699 2.2032 -2.0367 31 1 5.5038 0.7634 -1.8748 32 1 6.6719 3.1085 -0.6618 33 1 5.4768 2.7948 -4.2254 34 1 6.0431 4.4087 -3.7325 35 1 8.0209 4.1662 -5.2076 36 1 7.4552 2.5522 -5.7010 37 1 8.3480 4.1931 -8.8753 38 1 4.4054 -1.3710 0.0071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116353659.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:06 Heat of formation + Delta-G solvation = -51.550027 kcal Electronic energy + Delta-G solvation = -22345.655585 eV Core-core repulsion = 18738.108620 eV Total energy + Delta-G solvation = -3607.546965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 2.59 seconds Orbital eigenvalues (eV) -41.58086 -37.90882 -36.52387 -35.40190 -34.35597 -33.88733 -33.50413 -31.21605 -31.15471 -28.26818 -26.43607 -25.59560 -23.16759 -21.67340 -21.45053 -20.63043 -18.89105 -17.83663 -17.48118 -16.81331 -16.23415 -15.74903 -15.70327 -15.42215 -15.21395 -14.71277 -14.57248 -14.41569 -14.24053 -13.37601 -13.26761 -13.11118 -13.05284 -12.66236 -12.47655 -11.79082 -11.74356 -11.68948 -11.55302 -11.46200 -11.08797 -10.96700 -10.94374 -10.42033 -10.38854 -10.34610 -9.79805 -9.75194 -9.47484 -9.01480 -8.73895 -8.50607 -6.12701 -4.18305 0.82168 1.54546 2.18245 2.42302 3.19232 3.25274 3.31478 3.33946 4.10625 4.27087 4.28674 4.38355 4.48089 4.62750 4.73519 4.76456 4.80408 4.93982 4.97366 5.01061 5.22467 5.34483 5.42068 5.46747 5.66529 5.69821 5.90663 5.99984 6.27065 6.49488 6.62645 7.14549 7.30731 7.33723 7.37219 7.47684 7.80118 8.17494 8.85055 9.46380 10.98345 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015131 B = 0.003475 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.083044 B = 8054.689634 C = 9453.336300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.376 5.376 3 C 0.070 3.930 4 C -0.273 4.273 5 C 0.186 3.814 6 H 0.109 0.891 7 O -0.550 6.550 8 C 0.088 3.912 9 N -1.122 6.122 10 S 2.595 3.405 11 O -0.967 6.967 12 O -0.968 6.968 13 C -0.591 4.591 14 C 0.027 3.973 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.057 3.943 18 N -0.890 5.890 19 Si 0.900 3.100 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.062 3.938 24 N -0.295 5.295 25 H 0.074 0.926 26 H 0.089 0.911 27 H 0.090 0.910 28 H 0.177 0.823 29 H 0.377 0.623 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.392 -5.748 17.908 23.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.158 5.158 3 C -0.076 4.076 4 C -0.285 4.285 5 C 0.124 3.876 6 H 0.127 0.873 7 O -0.355 6.355 8 C -0.039 4.039 9 N -0.880 5.880 10 S 2.693 3.307 11 O -0.957 6.957 12 O -0.958 6.958 13 C -0.724 4.724 14 C -0.012 4.012 15 C -0.560 4.560 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.125 4.125 24 N -0.116 5.116 25 H 0.093 0.907 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.194 0.806 29 H 0.225 0.775 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -14.424 -6.657 17.935 23.959 hybrid contribution -0.686 1.150 -1.019 1.683 sum -15.110 -5.506 16.916 23.340 Atomic orbital electron populations 1.21891 0.74026 1.04760 1.03411 1.48533 1.06797 1.03838 1.56589 1.22331 0.90577 0.93647 1.01093 1.20699 0.95115 0.94713 1.17995 1.20158 0.82881 0.94698 0.89865 0.87340 1.86578 1.55804 1.37460 1.55662 1.21987 0.87744 0.95726 0.98468 1.55671 1.41168 1.58979 1.32184 1.05466 0.75254 0.75113 0.74898 1.93556 1.52819 1.67680 1.81690 1.93531 1.83691 1.34359 1.84208 1.30457 1.14567 1.12030 1.15373 1.18963 0.95311 0.99018 0.87870 1.21004 0.98801 1.41201 0.94985 0.92097 1.25070 0.95223 0.95552 0.98671 1.69961 1.14675 1.46877 1.21297 0.86470 0.80517 0.79474 0.80807 1.20467 1.21001 1.19821 1.23699 0.95411 0.94276 0.99102 1.77396 1.01610 1.08162 1.24408 0.90701 0.89263 0.89163 0.80577 0.77480 0.90923 0.89867 0.75130 0.86463 0.86126 0.94802 0.94822 0.92524 0.79879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.47 59.85 0.69 1.15 16 2 N -0.38 -3.27 4.01 -68.16 -0.27 -3.54 16 3 C 0.07 0.55 11.40 -17.22 -0.20 0.35 16 4 C -0.27 -2.43 5.15 -105.05 -0.54 -2.98 16 5 C 0.19 1.63 3.51 -27.88 -0.10 1.54 16 6 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 7 O -0.55 -5.40 13.09 -35.23 -0.46 -5.87 16 8 C 0.09 0.92 5.78 -4.04 -0.02 0.89 16 9 N -1.12 -13.89 5.75 -10.61 -0.06 -13.95 16 10 S 2.60 45.42 5.46 -107.50 -0.59 44.84 16 11 O -0.97 -20.02 18.08 -57.54 -1.04 -21.06 16 12 O -0.97 -19.73 17.48 -57.54 -1.01 -20.74 16 13 C -0.59 -11.05 6.02 37.16 0.22 -10.83 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.06 0.60 11.40 -17.37 -0.20 0.40 16 24 N -0.29 -3.27 12.58 30.62 0.39 -2.89 16 25 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.18 0.78 8.06 -52.49 -0.42 0.35 16 29 H 0.38 2.78 8.24 45.56 0.38 3.16 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.92 7.68 -51.93 -0.40 0.53 16 32 H 0.41 4.52 8.62 -34.47 -0.30 4.23 16 33 H 0.12 1.95 8.14 -51.92 -0.42 1.53 16 34 H 0.12 2.02 8.14 -51.92 -0.42 1.59 16 35 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 38 H 0.18 1.31 7.64 -52.49 -0.40 0.91 16 LS Contribution 344.45 15.07 5.19 5.19 Total: -1.00 -38.70 344.45 -7.32 -46.03 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.49 Total: 3.67 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: -0.70 Total: -22.02 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.79 Total: -46.10 kcal Atomic # 8 Polarization: -45.16 SS G_CDS: -2.51 Total: -47.67 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -0.59 Total: 44.84 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -38.70 -7.32 -46.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116353659.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.522 kcal (2) G-P(sol) polarization free energy of solvation -38.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.59 seconds