Wall clock time and date at job start Tue Mar 31 2020 03:47:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99992 * 2 1 4 4 H 1.48499 * 109.46981 * 269.99449 * 3 2 1 5 5 H 1.48496 * 109.47201 * 29.99571 * 3 2 1 6 6 H 1.48500 * 109.47250 * 149.99796 * 3 2 1 7 7 C 1.38812 * 119.99778 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00339 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99844 * 180.02562 * 7 2 1 10 10 C 1.46502 * 120.00060 * 180.02562 * 9 7 2 11 11 C 1.53007 * 109.46947 * 179.97438 * 10 9 7 12 12 N 1.46502 * 109.46947 * 179.97438 * 11 10 9 13 13 C 1.34774 * 119.99866 * 179.97438 * 12 11 10 14 14 O 1.21513 * 120.00240 * 0.02562 * 13 12 11 15 15 C 1.48172 * 119.99607 * 179.97438 * 13 12 11 16 16 C 1.39308 * 119.71823 * 180.02562 * 15 13 12 17 17 C 1.38595 * 119.05699 * 180.02562 * 16 15 13 18 18 C 1.38623 * 118.48634 * 359.97438 * 17 16 15 19 19 C 1.50700 * 120.32225 * 180.02562 * 18 17 16 20 20 F 1.39903 * 109.46897 * 90.00189 * 19 18 17 21 21 F 1.39894 * 109.47398 * 210.00306 * 19 18 17 22 22 F 1.39902 * 109.47418 * 330.00195 * 19 18 17 23 23 C 1.38556 * 119.35381 * 0.02562 * 18 17 16 24 24 N 1.31515 * 120.90624 * 0.02562 * 23 18 17 25 25 H 0.96992 * 120.00108 * 0.02562 * 1 2 3 26 26 H 0.97004 * 119.99972 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.46767 * 60.00113 * 10 9 7 28 28 H 1.09000 * 109.47119 * 299.99742 * 10 9 7 29 29 H 1.09003 * 109.47000 * 60.00010 * 11 10 9 30 30 H 1.09000 * 109.47045 * 299.99842 * 11 10 9 31 31 H 0.97004 * 119.99968 * 0.02562 * 12 11 10 32 32 H 1.08000 * 120.47506 * 0.27259 * 16 15 13 33 33 H 1.07998 * 120.75242 * 180.02562 * 17 16 15 34 34 H 1.08001 * 119.54716 * 179.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 6 5.6164 -2.1913 0.0011 12 7 6.3489 -3.4601 0.0017 13 6 7.6966 -3.4600 0.0013 14 8 8.3042 -2.4077 0.0009 15 6 8.4374 -4.7433 0.0025 16 6 9.8305 -4.7365 0.0026 17 6 10.5095 -5.9447 0.0032 18 6 9.7713 -7.1180 0.0042 19 6 10.4672 -8.4547 0.0054 20 9 10.6823 -8.8672 1.3248 21 9 9.6694 -9.3964 -0.6533 22 9 11.6958 -8.3416 -0.6541 23 6 8.3874 -7.0497 0.0040 24 7 7.7683 -5.8894 0.0024 25 1 -0.4850 0.8400 -0.0004 26 1 3.8646 -0.3621 0.0014 27 1 3.8491 -3.0423 -0.8892 28 1 3.8485 -3.0427 0.8908 29 1 5.8797 -1.6197 0.8911 30 1 5.8797 -1.6198 -0.8889 31 1 5.8639 -4.3001 0.0016 32 1 10.3737 -3.8030 0.0062 33 1 11.5892 -5.9714 0.0037 34 1 7.8092 -7.9619 0.0044 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132132827.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:02 Heat of formation + Delta-G solvation = -131.545606 kcal Electronic energy + Delta-G solvation = -23168.976849 eV Core-core repulsion = 18880.660324 eV Total energy + Delta-G solvation = -4288.316525 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.71501 -48.23104 -48.17101 -41.21520 -39.30693 -36.00297 -34.28580 -33.62893 -32.51570 -31.44195 -28.69949 -27.04597 -24.61306 -24.06127 -23.00072 -21.54500 -20.99840 -19.20178 -19.05150 -19.00340 -18.42350 -17.58209 -17.13913 -15.82025 -15.73530 -15.49400 -15.06778 -14.99683 -14.77856 -14.61532 -14.60840 -14.41714 -14.36268 -14.31589 -13.87084 -13.76880 -13.67081 -13.59263 -12.66781 -12.46900 -11.68698 -11.55485 -11.03339 -10.87801 -10.81266 -10.72235 -10.19033 -10.12500 -10.02962 -9.64476 -9.15997 -8.94201 -7.33191 -5.81886 -3.19720 -0.27824 0.47188 2.00221 2.21654 2.77871 3.08581 3.21653 3.36382 3.37446 3.39631 3.44166 3.59135 3.82371 3.99825 4.21425 4.32941 4.51335 4.55507 5.01686 5.13586 5.18386 5.28260 5.40438 5.55768 5.59193 5.71671 5.87602 6.23224 6.53232 6.53884 6.92369 7.38475 7.90730 7.95780 8.35930 9.13374 9.85493 10.03484 11.35917 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.037471 B = 0.002310 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.061614 B =12120.372330 C =12682.329568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.276 1.276 7 C -0.249 4.249 8 H 0.092 0.908 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.104 3.896 12 N -0.696 5.696 13 C 0.564 3.436 14 O -0.527 6.527 15 C 0.119 3.881 16 C -0.115 4.115 17 C -0.027 4.027 18 C -0.227 4.227 19 C 0.517 3.483 20 F -0.172 7.172 21 F -0.172 7.172 22 F -0.174 7.174 23 C 0.156 3.844 24 N -0.453 5.453 25 H 0.261 0.739 26 H 0.363 0.637 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.413 0.587 32 H 0.163 0.837 33 H 0.157 0.843 34 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.345 -18.422 0.017 31.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.379 4.379 8 H 0.110 0.890 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.019 4.019 12 N -0.346 5.346 13 C 0.347 3.653 14 O -0.403 6.403 15 C -0.019 4.019 16 C -0.136 4.136 17 C -0.053 4.053 18 C -0.230 4.230 19 C 0.462 3.538 20 F -0.153 7.153 21 F -0.153 7.153 22 F -0.155 7.155 23 C -0.004 4.004 24 N -0.164 5.164 25 H 0.071 0.929 26 H 0.196 0.804 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.250 0.750 32 H 0.181 0.819 33 H 0.174 0.826 34 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 24.578 -17.679 0.019 30.276 hybrid contribution 1.327 0.454 0.008 1.402 sum 25.905 -17.225 0.027 31.109 Atomic orbital electron populations 1.69697 1.05116 1.26012 1.57037 1.24680 0.95273 0.97333 1.01648 0.86537 0.79269 0.84766 0.77916 1.20916 1.21590 1.20172 1.19007 0.80166 0.94907 1.43792 0.89038 1.42523 1.04175 1.01774 1.91407 1.20735 0.87316 0.90334 0.99598 1.21740 0.92737 0.84596 1.02840 1.45770 1.05568 1.11258 1.72045 1.17731 0.82697 0.86956 0.77964 1.90826 1.68342 1.31189 1.49989 1.21626 0.91955 0.92729 0.95604 1.22194 0.94053 0.99807 0.97497 1.21473 1.01583 0.90437 0.91779 1.21291 0.97076 0.93387 1.11283 1.18003 0.76853 0.84858 0.74110 1.93261 1.94866 1.91503 1.35681 1.93225 1.73480 1.67499 1.81075 1.93217 1.45063 1.96142 1.81097 1.22705 0.89855 0.96802 0.91073 1.67804 1.40006 0.97580 1.10972 0.92914 0.80380 0.94673 0.94719 0.90851 0.90833 0.75043 0.81911 0.82577 0.80611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 2 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 3 Si 0.89 21.95 27.74 -169.99 -4.71 17.23 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 7 C -0.25 -6.98 10.47 -15.06 -0.16 -7.14 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 9 N -0.75 -17.60 5.41 -59.90 -0.32 -17.92 16 10 C 0.15 2.70 6.37 -4.04 -0.03 2.68 16 11 C 0.10 1.61 5.79 -4.04 -0.02 1.59 16 12 N -0.70 -9.09 5.55 -61.14 -0.34 -9.43 16 13 C 0.56 7.47 7.81 -12.18 -0.10 7.37 16 14 O -0.53 -8.41 16.32 5.35 0.09 -8.33 16 15 C 0.12 1.25 6.75 -83.01 -0.56 0.69 16 16 C -0.11 -0.94 9.63 -39.05 -0.38 -1.31 16 17 C -0.03 -0.17 9.51 -39.31 -0.37 -0.54 16 18 C -0.23 -1.54 5.47 -104.36 -0.57 -2.11 16 19 C 0.52 3.41 3.38 36.01 0.12 3.53 16 20 F -0.17 -1.26 17.30 2.25 0.04 -1.22 16 21 F -0.17 -1.19 16.48 2.25 0.04 -1.15 16 22 F -0.17 -1.19 16.52 2.25 0.04 -1.15 16 23 C 0.16 1.15 10.56 -17.57 -0.19 0.97 16 24 N -0.45 -4.35 9.54 -9.80 -0.09 -4.45 16 25 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 26 H 0.36 8.31 5.53 -40.82 -0.23 8.08 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.41 4.74 7.80 -40.82 -0.32 4.42 16 32 H 0.16 1.19 7.64 -52.49 -0.40 0.79 16 33 H 0.16 0.58 7.68 -52.49 -0.40 0.17 16 34 H 0.18 0.88 7.61 -52.49 -0.40 0.48 16 LS Contribution 316.01 15.07 4.76 4.76 Total: -1.00 -32.90 316.01 -5.11 -38.00 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -3.03 Total: 6.09 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -2.34 Total: 5.82 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: 0.02 Total: -60.07 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: 0.09 Total: -8.33 kcal Atomic # 9 Polarization: -3.63 SS G_CDS: 0.11 Total: -3.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.23 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.90 -5.11 -38.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132132827.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.544 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds