Wall clock time and date at job start Tue Mar 31 2020 03:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86805 * 119.99922 * 2 1 4 4 H 1.48500 * 109.47176 * 270.00391 * 3 2 1 5 5 H 1.48501 * 109.47370 * 30.00400 * 3 2 1 6 6 H 1.48500 * 109.46963 * 150.00677 * 3 2 1 7 7 C 1.38808 * 120.00265 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00309 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99734 * 359.97438 * 7 2 1 10 10 C 1.46493 * 119.99919 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47520 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47520 * 179.97438 * 11 10 9 13 13 C 1.34778 * 119.99824 * 180.02562 * 12 11 10 14 14 O 1.21555 * 120.00264 * 359.97438 * 13 12 11 15 15 C 1.47844 * 119.99961 * 180.02562 * 13 12 11 16 16 C 1.40021 * 120.55812 * 0.27265 * 15 13 12 17 17 C 1.38356 * 118.28930 * 180.26824 * 16 15 13 18 18 C 1.38352 * 119.30108 * 359.45848 * 17 16 15 19 19 N 1.31932 * 121.08143 * 0.27994 * 18 17 16 20 20 C 1.31691 * 121.87487 * 0.02562 * 19 18 17 21 21 C 1.50705 * 119.71343 * 179.97438 * 20 19 18 22 22 F 1.39894 * 109.47327 * 4.99720 * 21 20 19 23 23 F 1.39898 * 109.47089 * 124.99964 * 21 20 19 24 24 F 1.39901 * 109.46947 * 244.99786 * 21 20 19 25 25 H 0.97001 * 119.99968 * 359.97438 * 1 2 3 26 26 H 0.97001 * 119.99563 * 0.02562 * 9 7 2 27 27 H 1.09003 * 109.47468 * 60.00211 * 10 9 7 28 28 H 1.09009 * 109.47347 * 300.00467 * 10 9 7 29 29 H 1.09003 * 109.46595 * 59.99656 * 11 10 9 30 30 H 1.09001 * 109.47323 * 300.00835 * 11 10 9 31 31 H 0.97001 * 120.00512 * 359.97438 * 12 11 10 32 32 H 1.08004 * 120.85991 * 0.02562 * 16 15 13 33 33 H 1.08002 * 120.35338 * 179.74185 * 17 16 15 34 34 H 1.08003 * 119.46505 * 180.25792 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0005 10 6 2.0581 -3.6567 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7964 -6.0884 -0.0018 13 6 1.1225 -7.2556 -0.0030 14 8 -0.0931 -7.2556 -0.0030 15 6 1.8617 -8.5359 -0.0030 16 6 3.2618 -8.5496 0.0039 17 6 3.9056 -9.7742 -0.0022 18 6 3.1528 -10.9350 -0.0033 19 7 1.8342 -10.8916 -0.0043 20 6 1.1759 -9.7510 -0.0046 21 6 -0.3311 -9.7582 -0.0063 22 9 -0.7912 -11.0744 0.1077 23 9 -0.8022 -9.0043 1.0738 24 9 -0.7988 -9.2027 -1.2021 25 1 -0.4850 0.8401 0.0004 26 1 0.3556 -2.3880 -0.0005 27 1 2.6847 -3.7145 0.8895 28 1 2.6848 -3.7144 -0.8905 29 1 0.4376 -4.7617 -0.8914 30 1 0.4368 -4.7622 0.8885 31 1 2.7664 -6.0884 -0.0021 32 1 3.8248 -7.6279 0.0097 33 1 4.9845 -9.8236 -0.0014 34 1 3.6526 -11.8924 -0.0038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134345347.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:22 Heat of formation + Delta-G solvation = -124.863736 kcal Electronic energy + Delta-G solvation = -24307.231408 eV Core-core repulsion = 20019.204631 eV Total energy + Delta-G solvation = -4288.026777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.99156 -47.53176 -47.41751 -41.17515 -39.28786 -35.88725 -34.24402 -33.28944 -32.65055 -31.20686 -28.14087 -26.72484 -25.16051 -23.69033 -22.83082 -21.60018 -20.99506 -19.04251 -18.47969 -18.36323 -17.92692 -17.24135 -16.88573 -15.87796 -15.73935 -15.59462 -14.78966 -14.68560 -14.54459 -14.24747 -14.16133 -13.97888 -13.74139 -13.63373 -13.57679 -13.52071 -13.27010 -13.23595 -12.90462 -12.23462 -11.56566 -11.18690 -10.89589 -10.85253 -10.65577 -10.55570 -10.17800 -10.03143 -9.95943 -9.79297 -9.12303 -8.93580 -7.04979 -5.83804 -3.15269 -0.11052 0.37766 2.35436 2.47050 2.83973 3.17434 3.39370 3.43613 3.44407 3.46415 3.72920 4.05516 4.10243 4.30915 4.42962 4.53445 4.55521 4.58336 4.78407 5.17141 5.32109 5.39802 5.44568 5.69027 5.74487 5.86029 6.03853 6.30522 6.59550 6.60506 7.01810 7.30289 7.61096 7.97490 8.33376 9.44842 9.98661 10.33149 11.38589 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.026716 B = 0.002948 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.810603 B = 9496.704695 C =10359.418111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.110 3.890 12 N -0.709 5.709 13 C 0.546 3.454 14 O -0.510 6.510 15 C -0.132 4.132 16 C -0.044 4.044 17 C -0.146 4.146 18 C 0.121 3.879 19 N -0.447 5.447 20 C 0.090 3.910 21 C 0.529 3.471 22 F -0.171 7.171 23 F -0.154 7.154 24 F -0.161 7.161 25 H 0.257 0.743 26 H 0.387 0.613 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.398 0.602 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.098 -24.149 0.050 25.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.207 4.207 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.013 4.013 12 N -0.360 5.360 13 C 0.330 3.670 14 O -0.386 6.386 15 C -0.138 4.138 16 C -0.070 4.070 17 C -0.166 4.166 18 C -0.037 4.037 19 N -0.155 5.155 20 C -0.051 4.051 21 C 0.474 3.526 22 F -0.153 7.153 23 F -0.135 7.135 24 F -0.142 7.142 25 H 0.067 0.933 26 H 0.221 0.779 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.233 0.767 32 H 0.172 0.828 33 H 0.173 0.827 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.807 -24.758 0.060 25.960 hybrid contribution 1.042 1.689 -0.014 1.985 sum 8.849 -23.068 0.045 24.707 Atomic orbital electron populations 1.69666 1.05166 1.25945 1.56916 1.24788 0.95563 0.97853 1.02495 0.86149 0.78604 0.83565 0.77569 1.21587 1.21648 1.20692 1.19172 0.91016 0.83804 1.43794 0.91021 1.42177 1.06044 0.99477 1.89730 1.20752 0.93439 0.85696 0.98459 1.21698 0.95515 0.80863 1.03206 1.45744 1.10367 1.05805 1.74106 1.17887 0.87477 0.83304 0.78321 1.90927 1.12555 1.86911 1.48196 1.20843 0.95126 0.94505 1.03280 1.21900 0.92283 0.99915 0.92930 1.22384 1.02648 0.92706 0.98852 1.23093 0.88179 0.99567 0.92821 1.67351 1.10773 1.27142 1.10185 1.21234 0.94231 0.89552 1.00092 1.17489 0.85935 0.73822 0.75383 1.93205 1.90225 1.36069 1.95778 1.93283 1.89392 1.75952 1.54870 1.93248 1.89584 1.85384 1.45985 0.93281 0.77913 0.95762 0.95773 0.90689 0.90671 0.76666 0.82844 0.82736 0.80796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 21.94 29.55 -169.99 -5.02 16.92 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.75 9.99 -15.06 -0.15 -6.90 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -18.04 5.60 -59.91 -0.34 -18.38 16 10 C 0.14 2.68 6.37 -4.05 -0.03 2.65 16 11 C 0.11 1.79 5.79 -4.05 -0.02 1.76 16 12 N -0.71 -8.90 5.51 -61.25 -0.34 -9.24 16 13 C 0.55 7.63 7.59 -12.33 -0.09 7.54 16 14 O -0.51 -9.02 11.34 5.32 0.06 -8.96 16 15 C -0.13 -1.46 5.86 -104.82 -0.61 -2.08 16 16 C -0.04 -0.30 9.65 -38.87 -0.37 -0.67 16 17 C -0.15 -0.70 10.10 -39.50 -0.40 -1.10 16 18 C 0.12 0.77 11.17 -17.47 -0.20 0.57 16 19 N -0.45 -4.73 9.73 -9.14 -0.09 -4.82 16 20 C 0.09 1.11 6.30 -82.17 -0.52 0.60 16 21 C 0.53 7.65 2.78 36.01 0.10 7.75 16 22 F -0.17 -2.38 16.86 2.25 0.04 -2.34 16 23 F -0.15 -2.46 14.47 2.25 0.03 -2.43 16 24 F -0.16 -2.53 15.54 2.25 0.03 -2.49 16 25 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 26 H 0.39 10.19 7.67 -40.82 -0.31 9.88 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.40 3.59 6.58 -40.82 -0.27 3.32 16 32 H 0.15 0.60 6.52 -52.48 -0.34 0.26 16 33 H 0.15 0.18 8.06 -52.49 -0.42 -0.24 16 34 H 0.18 0.47 8.06 -52.48 -0.42 0.05 16 LS Contribution 309.66 15.07 4.67 4.67 Total: -1.00 -34.55 309.66 -5.62 -40.18 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -3.01 Total: 4.33 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: -2.39 Total: 9.73 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -0.04 Total: -59.61 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.06 Total: -8.96 kcal Atomic # 9 Polarization: -7.37 SS G_CDS: 0.11 Total: -7.26 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -34.55 -5.62 -40.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134345347.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.688 kcal (2) G-P(sol) polarization free energy of solvation -34.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds