Wall clock time and date at job start Tue Mar 31 2020 03:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 120.00101 * 2 1 4 4 H 1.48502 * 109.47120 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46888 * 299.99864 * 3 2 1 6 6 H 1.48492 * 109.47072 * 59.99736 * 3 2 1 7 7 C 1.38817 * 120.00289 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00153 * 180.02562 * 7 2 1 9 9 N 1.36941 * 119.99584 * 359.97438 * 7 2 1 10 10 C 1.46502 * 119.99746 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47103 * 180.02562 * 10 9 7 12 12 N 1.46493 * 109.47302 * 179.97438 * 11 10 9 13 13 C 1.34770 * 120.00184 * 179.97438 * 12 11 10 14 14 O 1.21512 * 120.00138 * 0.02562 * 13 12 11 15 15 C 1.48179 * 120.00218 * 179.97438 * 13 12 11 16 16 C 1.39304 * 119.72482 * 180.28070 * 15 13 12 17 17 C 1.38586 * 119.06089 * 180.27762 * 16 15 13 18 18 C 1.38628 * 118.48302 * 359.45318 * 17 16 15 19 19 C 1.38553 * 119.35502 * 0.28010 * 18 17 16 20 20 C 1.50699 * 119.54983 * 179.97438 * 19 18 17 21 21 F 1.39909 * 109.47402 * 89.99611 * 20 19 18 22 22 F 1.39898 * 109.47252 * 209.99866 * 20 19 18 23 23 F 1.39897 * 109.47192 * 330.00080 * 20 19 18 24 24 N 1.31519 * 120.90388 * 359.97438 * 19 18 17 25 25 H 0.97002 * 119.99707 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00237 * 0.02562 * 9 7 2 27 27 H 1.08999 * 109.47302 * 60.00241 * 10 9 7 28 28 H 1.09004 * 109.46680 * 300.00230 * 10 9 7 29 29 H 1.08999 * 109.47135 * 59.99783 * 11 10 9 30 30 H 1.08999 * 109.46914 * 300.00370 * 11 10 9 31 31 H 0.97001 * 119.99818 * 0.02562 * 12 11 10 32 32 H 1.08001 * 120.47262 * 0.02862 * 16 15 13 33 33 H 1.08002 * 120.76134 * 179.73411 * 17 16 15 34 34 H 1.08005 * 120.32045 * 180.30555 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8197 -0.0012 12 7 1.7964 -6.0884 -0.0018 13 6 1.1225 -7.2556 -0.0019 14 8 -0.0926 -7.2556 -0.0020 15 6 1.8634 -8.5389 -0.0031 16 6 1.1611 -9.7419 -0.0091 17 6 1.8678 -10.9340 -0.0043 18 6 3.2531 -10.8813 -0.0053 19 6 3.8859 -9.6487 -0.0050 20 6 5.3916 -9.5863 -0.0055 21 9 5.8573 -9.5667 -1.3246 22 9 5.8105 -8.4260 0.6543 23 9 5.9050 -10.7085 0.6535 24 7 3.1905 -8.5324 -0.0045 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 -0.0005 27 1 2.6848 -3.7146 0.8894 28 1 2.6848 -3.7144 -0.8906 29 1 0.4376 -4.7618 -0.8914 30 1 0.4369 -4.7621 0.8885 31 1 2.7664 -6.0884 -0.0014 32 1 0.0811 -9.7456 -0.0134 33 1 1.3512 -11.8824 -0.0045 34 1 3.8334 -11.7922 -0.0066 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135650116.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:05 Heat of formation + Delta-G solvation = -133.571163 kcal Electronic energy + Delta-G solvation = -23562.378970 eV Core-core repulsion = 19273.974611 eV Total energy + Delta-G solvation = -4288.404360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.094 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.52619 -48.08410 -47.94225 -41.17908 -39.20078 -35.79915 -34.06012 -33.31865 -32.78479 -31.14993 -27.98980 -27.13645 -25.25412 -23.56786 -22.99254 -21.52245 -20.99096 -19.09814 -18.91885 -18.85433 -17.76696 -17.27067 -16.74062 -16.31958 -15.71535 -15.55977 -14.96786 -14.77411 -14.53549 -14.50614 -14.48407 -14.41582 -14.13068 -14.10481 -13.77860 -13.55423 -13.23236 -13.18093 -12.87861 -12.51618 -11.49540 -11.12745 -10.83942 -10.82215 -10.72250 -10.69955 -10.13882 -10.01928 -9.99343 -9.75018 -9.04050 -8.87191 -6.98966 -5.79194 -3.09790 -0.05555 0.35332 1.97776 2.30187 2.89251 3.11408 3.25504 3.41483 3.43255 3.48938 3.51245 3.97063 3.99801 4.23416 4.30304 4.34037 4.59429 4.70101 4.77752 5.24821 5.37445 5.49773 5.50348 5.74043 5.74591 5.94184 6.10395 6.40293 6.67919 6.69721 6.85368 7.49580 7.68116 8.07499 8.38401 9.49980 10.04023 10.39047 11.43494 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.002855 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.779356 B = 9804.933452 C =11046.609137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.012 4.012 3 Si 0.910 3.090 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.243 4.243 8 H 0.073 0.927 9 N -0.729 5.729 10 C 0.143 3.857 11 C 0.108 3.892 12 N -0.697 5.697 13 C 0.567 3.433 14 O -0.529 6.529 15 C 0.094 3.906 16 C -0.082 4.082 17 C -0.076 4.076 18 C -0.106 4.106 19 C 0.036 3.964 20 C 0.525 3.475 21 F -0.169 7.169 22 F -0.160 7.160 23 F -0.171 7.171 24 N -0.418 5.418 25 H 0.256 0.744 26 H 0.386 0.614 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.411 0.589 32 H 0.162 0.838 33 H 0.158 0.842 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.931 -28.160 0.005 29.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.209 4.209 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.374 4.374 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.015 3.985 11 C -0.015 4.015 12 N -0.348 5.348 13 C 0.350 3.650 14 O -0.405 6.405 15 C -0.046 4.046 16 C -0.103 4.103 17 C -0.102 4.102 18 C -0.126 4.126 19 C -0.105 4.105 20 C 0.469 3.531 21 F -0.150 7.150 22 F -0.141 7.141 23 F -0.153 7.153 24 N -0.130 5.130 25 H 0.066 0.934 26 H 0.220 0.780 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.247 0.753 32 H 0.180 0.820 33 H 0.175 0.825 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 7.650 -27.151 0.005 28.208 hybrid contribution 0.499 0.140 -0.006 0.519 sum 8.150 -27.011 -0.001 28.214 Atomic orbital electron populations 1.69678 1.05153 1.25722 1.57375 1.24779 0.95570 0.97821 1.02692 0.86074 0.78783 0.83848 0.77213 1.20463 1.21785 1.21779 1.19252 0.91120 0.83799 1.43200 0.90913 1.42188 1.05990 0.99541 1.89745 1.20767 0.93437 0.85512 0.98751 1.21709 0.95569 0.81274 1.02939 1.45819 1.11455 1.05463 1.72026 1.17649 0.86648 0.82811 0.77914 1.90826 1.12479 1.86837 1.50330 1.21333 0.88281 0.95163 0.99818 1.22438 1.03296 0.91399 0.93140 1.21704 0.93131 0.99420 0.95910 1.22078 0.96176 0.98172 0.96220 1.20917 0.93161 0.91006 1.05449 1.17790 0.86682 0.74247 0.74358 1.93261 1.89983 1.96142 1.35615 1.93270 1.91309 1.48842 1.80682 1.93213 1.88414 1.52489 1.81143 1.67029 1.08173 1.30077 1.07687 0.93425 0.78003 0.95543 0.95565 0.90787 0.90779 0.75296 0.82013 0.82485 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 2 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 22.46 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.73 -18.65 5.60 -59.91 -0.34 -18.98 16 10 C 0.14 2.86 6.37 -4.04 -0.03 2.84 16 11 C 0.11 1.87 5.79 -4.05 -0.02 1.84 16 12 N -0.70 -10.21 5.54 -61.15 -0.34 -10.55 16 13 C 0.57 8.19 7.81 -12.18 -0.10 8.10 16 14 O -0.53 -9.00 16.32 5.36 0.09 -8.91 16 15 C 0.09 1.08 6.75 -83.01 -0.56 0.52 16 16 C -0.08 -0.68 9.63 -39.06 -0.38 -1.06 16 17 C -0.08 -0.41 10.17 -39.31 -0.40 -0.81 16 18 C -0.11 -0.65 9.44 -39.32 -0.37 -1.03 16 19 C 0.04 0.34 6.30 -82.61 -0.52 -0.18 16 20 C 0.52 4.86 3.43 36.01 0.12 4.98 16 21 F -0.17 -1.64 17.30 2.25 0.04 -1.60 16 22 F -0.16 -1.77 17.03 2.25 0.04 -1.73 16 23 F -0.17 -1.37 16.44 2.25 0.04 -1.33 16 24 N -0.42 -4.74 9.14 -6.06 -0.06 -4.79 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.39 10.36 7.67 -40.82 -0.31 10.05 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.41 5.48 7.80 -40.82 -0.32 5.16 16 32 H 0.16 1.20 7.64 -52.49 -0.40 0.80 16 33 H 0.16 0.28 8.06 -52.49 -0.42 -0.14 16 34 H 0.15 0.51 7.60 -52.48 -0.40 0.11 16 LS Contribution 319.97 15.07 4.82 4.82 Total: -1.00 -33.04 319.97 -5.59 -38.63 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.09 Total: 6.87 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -2.49 Total: 7.76 kcal Atomic # 7 Polarization: -61.93 SS G_CDS: -0.01 Total: -61.93 kcal Atomic # 8 Polarization: -9.00 SS G_CDS: 0.09 Total: -8.91 kcal Atomic # 9 Polarization: -4.78 SS G_CDS: 0.11 Total: -4.66 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -33.04 -5.59 -38.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135650116.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.940 kcal (2) G-P(sol) polarization free energy of solvation -33.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds