Wall clock time and date at job start Tue Mar 31 2020 03:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86795 * 120.00313 * 2 1 4 4 H 1.48503 * 109.47328 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47415 * 300.00446 * 3 2 1 6 6 H 1.48508 * 109.47051 * 60.00115 * 3 2 1 7 7 C 1.38812 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00339 * 179.97438 * 7 2 1 9 9 N 1.36939 * 119.99985 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99804 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46915 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47100 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99899 * 180.02562 * 12 11 10 14 14 O 1.21516 * 120.00263 * 0.02562 * 13 12 11 15 15 C 1.48150 * 119.99803 * 180.02562 * 13 12 11 16 16 C 1.39830 * 120.92602 * 359.97438 * 15 13 12 17 17 C 1.38123 * 119.00782 * 179.97438 * 16 15 13 18 18 N 1.31834 * 120.89583 * 359.97438 * 17 16 15 19 19 C 1.31800 * 122.04701 * 0.02562 * 18 17 16 20 20 C 1.50699 * 119.54975 * 179.97438 * 19 18 17 21 21 F 1.39898 * 109.47373 * 4.99600 * 20 19 18 22 22 F 1.39905 * 109.46723 * 124.99839 * 20 19 18 23 23 F 1.39899 * 109.46802 * 244.99681 * 20 19 18 24 24 C 1.38168 * 120.89387 * 359.97438 * 19 18 17 25 25 H 0.97005 * 120.00254 * 359.97438 * 1 2 3 26 26 H 0.96996 * 120.00335 * 0.02562 * 9 7 2 27 27 H 1.08997 * 109.46844 * 60.00687 * 10 9 7 28 28 H 1.08998 * 109.47583 * 299.99692 * 10 9 7 29 29 H 1.09002 * 109.46677 * 60.00254 * 11 10 9 30 30 H 1.09006 * 109.47352 * 300.00680 * 11 10 9 31 31 H 0.96999 * 120.00489 * 0.02562 * 12 11 10 32 32 H 1.08004 * 120.49788 * 0.02562 * 16 15 13 33 33 H 1.08005 * 119.55485 * 180.02562 * 17 16 15 34 34 H 1.08002 * 120.50091 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0016 10 6 2.0580 -3.6568 -0.0027 11 6 1.0637 -4.8197 -0.0031 12 7 1.7961 -6.0884 -0.0036 13 6 1.1222 -7.2556 -0.0046 14 8 -0.0930 -7.2556 -0.0055 15 6 1.8629 -8.5387 -0.0045 16 6 3.2610 -8.5613 -0.0041 17 6 3.9112 -9.7799 -0.0035 18 7 3.2318 -10.9097 -0.0029 19 6 1.9140 -10.9332 -0.0033 20 6 1.1943 -12.2573 -0.0031 21 9 2.1260 -13.2945 0.1123 22 9 0.3066 -12.3053 1.0771 23 9 0.4822 -12.4010 -1.1987 24 6 1.1835 -9.7604 -0.0038 25 1 -0.4851 0.8401 0.0004 26 1 0.3555 -2.3881 -0.0023 27 1 2.6845 -3.7154 0.8872 28 1 2.6846 -3.7139 -0.8928 29 1 0.4367 -4.7613 -0.8929 30 1 0.4372 -4.7626 0.8871 31 1 2.7661 -6.0885 -0.0033 32 1 3.8241 -7.6396 -0.0033 33 1 4.9909 -9.8077 -0.0027 34 1 0.1038 -9.7872 -0.0038 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001146599485.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:04 Heat of formation + Delta-G solvation = -132.295373 kcal Electronic energy + Delta-G solvation = -23247.456495 eV Core-core repulsion = 18959.107458 eV Total energy + Delta-G solvation = -4288.349037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.094 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.50979 -48.04041 -47.95943 -41.21036 -39.42346 -35.94224 -34.24324 -33.37731 -32.67617 -31.26554 -28.09494 -27.16160 -25.14254 -23.61712 -23.36784 -21.67612 -21.01529 -19.18836 -18.89813 -18.82575 -17.66934 -17.38359 -16.74416 -16.17070 -15.74640 -15.72166 -15.00872 -14.95540 -14.71909 -14.61947 -14.52611 -14.40863 -14.13892 -14.10875 -14.05401 -13.82296 -13.35358 -13.21415 -12.94698 -12.28306 -11.64937 -11.23699 -10.93916 -10.89563 -10.71147 -10.57506 -10.20081 -10.10480 -10.06051 -9.84214 -9.21729 -8.98647 -7.08720 -5.87385 -3.18872 -0.04609 0.22894 2.00578 2.38821 2.74603 3.09915 3.12315 3.37008 3.42060 3.44924 3.51941 3.97816 3.98947 4.10877 4.21857 4.34436 4.44324 4.51793 4.97062 5.06207 5.27547 5.36183 5.40344 5.62641 5.72447 5.80531 5.96747 6.23916 6.53852 6.55228 6.97870 7.23797 7.58699 7.89649 8.29762 9.41436 9.94710 10.29127 11.35101 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.041934 B = 0.002243 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.556606 B =12481.322715 C =12963.770524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.011 4.011 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.246 4.246 8 H 0.073 0.927 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.109 3.891 12 N -0.710 5.710 13 C 0.553 3.447 14 O -0.521 6.521 15 C -0.078 4.078 16 C -0.110 4.110 17 C 0.106 3.894 18 N -0.431 5.431 19 C 0.032 3.968 20 C 0.525 3.475 21 F -0.161 7.161 22 F -0.169 7.169 23 F -0.169 7.169 24 C -0.066 4.066 25 H 0.257 0.743 26 H 0.387 0.613 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.400 0.600 32 H 0.155 0.845 33 H 0.179 0.821 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.420 -24.572 -0.005 25.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.091 0.909 9 N -0.375 5.375 10 C 0.016 3.984 11 C -0.014 4.014 12 N -0.361 5.361 13 C 0.338 3.662 14 O -0.398 6.398 15 C -0.089 4.089 16 C -0.130 4.130 17 C -0.053 4.053 18 N -0.140 5.140 19 C -0.107 4.107 20 C 0.469 3.531 21 F -0.142 7.142 22 F -0.150 7.150 23 F -0.150 7.150 24 C -0.087 4.087 25 H 0.067 0.933 26 H 0.221 0.779 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.235 0.765 32 H 0.172 0.828 33 H 0.196 0.804 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 7.077 -25.224 -0.004 26.198 hybrid contribution 0.110 1.558 -0.004 1.562 sum 7.187 -23.666 -0.007 24.733 Atomic orbital electron populations 1.69671 1.05184 1.25869 1.57000 1.24793 0.95577 0.97901 1.02480 0.86075 0.78714 0.83788 0.77295 1.20482 1.21710 1.21715 1.19217 0.91058 0.83758 1.43684 0.90934 1.42184 1.06029 0.99497 1.89750 1.20756 0.93415 0.85641 0.98562 1.21718 0.95581 0.80968 1.03149 1.45820 1.10591 1.05888 1.73810 1.17935 0.87242 0.83202 0.77849 1.90836 1.12944 1.87158 1.48817 1.20465 0.93918 0.94337 1.00187 1.22690 0.93853 1.01049 0.95421 1.22850 1.00979 0.86025 0.95403 1.67092 1.06838 1.32075 1.07965 1.20879 0.91663 0.92552 1.05629 1.17766 0.77022 0.84091 0.74194 1.93238 1.65118 1.60279 1.95594 1.93257 1.69557 1.96682 1.55512 1.93256 1.79210 1.96161 1.46404 1.21936 1.02940 0.90456 0.93372 0.93316 0.77945 0.95686 0.95687 0.90697 0.90700 0.76456 0.82787 0.80419 0.82141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 21.72 29.55 -169.99 -5.02 16.70 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.25 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 9 N -0.73 -17.66 5.60 -59.91 -0.34 -18.00 16 10 C 0.14 2.59 6.37 -4.04 -0.03 2.56 16 11 C 0.11 1.67 5.79 -4.04 -0.02 1.65 16 12 N -0.71 -8.22 5.51 -61.15 -0.34 -8.56 16 13 C 0.55 6.97 7.80 -12.19 -0.10 6.88 16 14 O -0.52 -8.63 16.45 5.35 0.09 -8.55 16 15 C -0.08 -0.75 5.91 -104.65 -0.62 -1.37 16 16 C -0.11 -0.70 9.62 -39.03 -0.38 -1.08 16 17 C 0.11 0.68 11.17 -17.59 -0.20 0.48 16 18 N -0.43 -4.02 9.71 -9.52 -0.09 -4.11 16 19 C 0.03 0.31 6.26 -82.63 -0.52 -0.21 16 20 C 0.52 5.12 3.31 36.00 0.12 5.24 16 21 F -0.16 -1.66 16.85 2.25 0.04 -1.63 16 22 F -0.17 -1.66 17.16 2.25 0.04 -1.62 16 23 F -0.17 -1.68 17.28 2.25 0.04 -1.64 16 24 C -0.07 -0.66 9.18 -39.02 -0.36 -1.02 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.39 9.96 7.67 -40.82 -0.31 9.64 16 27 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.40 3.28 6.62 -40.82 -0.27 3.01 16 32 H 0.15 0.51 6.54 -52.48 -0.34 0.17 16 33 H 0.18 0.52 8.06 -52.48 -0.42 0.09 16 34 H 0.16 1.57 7.74 -52.49 -0.41 1.17 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -33.02 318.72 -5.39 -38.41 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -2.99 Total: 5.08 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -2.34 Total: 5.96 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.04 Total: -57.52 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 9 Polarization: -5.00 SS G_CDS: 0.12 Total: -4.89 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.02 -5.39 -38.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001146599485.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.886 kcal (2) G-P(sol) polarization free energy of solvation -33.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds