Wall clock time and date at job start Tue Mar 31 2020 03:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86798 * 119.99952 * 2 1 4 4 H 1.48505 * 109.47135 * 269.99254 * 3 2 1 5 5 H 1.48495 * 109.47309 * 29.99910 * 3 2 1 6 6 H 1.48507 * 109.46982 * 149.99721 * 3 2 1 7 7 C 1.38815 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99959 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99751 * 180.02562 * 7 2 1 10 10 C 1.46506 * 119.99464 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46754 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.47145 * 180.02562 * 11 10 9 13 13 C 1.34776 * 120.00103 * 179.97438 * 12 11 10 14 14 O 1.21534 * 119.99956 * 0.02562 * 13 12 11 15 15 C 1.48016 * 120.00114 * 180.02562 * 13 12 11 16 16 C 1.39462 * 119.92072 * 0.02562 * 15 13 12 17 17 C 1.38445 * 120.30785 * 179.97438 * 16 15 13 18 18 C 1.38593 * 119.90122 * 359.97438 * 17 16 15 19 19 C 1.40988 * 120.05775 * 0.02562 * 18 17 16 20 20 C 1.38422 * 119.96250 * 359.97438 * 19 18 17 21 21 C 1.47836 * 105.89050 * 179.97438 * 19 18 17 22 22 O 1.21448 * 125.69085 * 179.97438 * 21 19 18 23 23 N 1.34504 * 108.61820 * 0.06027 * 21 19 18 24 24 C 1.34513 * 111.10868 * 359.92407 * 23 21 19 25 25 O 1.21433 * 125.72241 * 180.02562 * 24 23 21 26 26 H 0.97004 * 120.00282 * 0.02562 * 1 2 3 27 27 H 0.96995 * 120.00692 * 0.02562 * 9 7 2 28 28 H 1.09002 * 109.47033 * 60.00510 * 10 9 7 29 29 H 1.08997 * 109.47221 * 299.99907 * 10 9 7 30 30 H 1.09002 * 109.47056 * 60.00375 * 11 10 9 31 31 H 1.08994 * 109.47648 * 300.00302 * 11 10 9 32 32 H 0.97000 * 119.99967 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.85264 * 0.02562 * 16 15 13 34 34 H 1.08004 * 120.05237 * 179.72731 * 17 16 15 35 35 H 1.08002 * 120.19520 * 180.02562 * 20 19 18 36 36 H 0.97001 * 124.44364 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0011 10 6 4.1121 -2.4709 0.0022 11 6 5.6163 -2.1913 0.0032 12 7 6.3489 -3.4600 0.0038 13 6 7.6966 -3.4600 0.0042 14 8 8.3043 -2.4075 0.0046 15 6 8.4367 -4.7419 0.0041 16 6 7.7378 -5.9487 0.0031 17 6 8.4219 -7.1523 0.0025 18 6 9.8078 -7.1592 0.0024 19 6 10.5201 -5.9425 0.0034 20 6 9.8344 -4.7400 0.0040 21 6 11.9517 -6.3115 0.0036 22 8 12.8840 -5.5332 0.0040 23 7 12.0494 -7.6530 0.0014 24 6 10.8330 -8.2273 0.0014 25 8 10.6127 -9.4214 0.0001 26 1 -0.4851 0.8401 -0.0004 27 1 3.8646 -0.3621 0.0014 28 1 3.8491 -3.0430 -0.8876 29 1 3.8484 -3.0419 0.8924 30 1 5.8789 -1.6194 0.8932 31 1 5.8804 -1.6201 -0.8867 32 1 5.8639 -4.3001 0.0031 33 1 6.6578 -5.9445 0.0019 34 1 7.8765 -8.0845 0.0062 35 1 10.3763 -3.8058 0.0044 36 1 12.8870 -8.1421 0.0007 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148344809.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:38:37 Heat of formation + Delta-G solvation = -34.875981 kcal Electronic energy + Delta-G solvation = -22612.717722 eV Core-core repulsion = 18870.449847 eV Total energy + Delta-G solvation = -3742.267875 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.79080 -40.34531 -39.20189 -38.37233 -36.22537 -36.04536 -34.20129 -32.19177 -31.79369 -31.33120 -28.44675 -25.94848 -25.18578 -23.57296 -22.99913 -21.63443 -21.06966 -20.79757 -18.55012 -18.53373 -17.91812 -17.47328 -16.98860 -16.43809 -16.00534 -15.69378 -15.69063 -15.14601 -14.63733 -14.58032 -14.53912 -14.20508 -14.06872 -13.82364 -13.59951 -13.12569 -12.71683 -12.43522 -11.74185 -11.60387 -11.23410 -11.07287 -11.02266 -10.98756 -10.91034 -10.29722 -10.22363 -9.92257 -9.86238 -9.68712 -9.24321 -8.99200 -7.38071 -5.86032 -3.24275 -0.72689 0.25908 1.16099 1.97207 2.34835 2.45357 2.70466 3.08817 3.19041 3.33767 3.37028 3.42035 3.64504 3.93029 4.16397 4.31141 4.51851 4.52440 4.58535 5.12622 5.15492 5.23451 5.25845 5.35245 5.39647 5.45428 5.51924 5.54743 5.76933 5.82955 5.89108 6.14816 6.45305 6.46240 6.55819 7.14047 7.22241 7.85635 7.90181 8.31596 9.08872 9.81122 9.98597 11.31572 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.035365 B = 0.002332 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.556169 B =12003.187657 C =12774.295953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.752 5.752 10 C 0.148 3.852 11 C 0.106 3.894 12 N -0.712 5.712 13 C 0.553 3.447 14 O -0.526 6.526 15 C -0.102 4.102 16 C -0.061 4.061 17 C -0.047 4.047 18 C -0.123 4.123 19 C -0.150 4.150 20 C 0.012 3.988 21 C 0.581 3.419 22 O -0.456 6.456 23 N -0.679 5.679 24 C 0.579 3.421 25 O -0.459 6.459 26 H 0.261 0.739 27 H 0.364 0.636 28 H 0.034 0.966 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.401 0.599 33 H 0.150 0.850 34 H 0.152 0.848 35 H 0.157 0.843 36 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.262 -17.768 0.008 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.381 4.381 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.020 3.980 11 C -0.018 4.018 12 N -0.364 5.364 13 C 0.338 3.662 14 O -0.403 6.403 15 C -0.105 4.105 16 C -0.080 4.080 17 C -0.065 4.065 18 C -0.127 4.127 19 C -0.154 4.154 20 C -0.007 4.007 21 C 0.368 3.632 22 O -0.326 6.326 23 N -0.346 5.346 24 C 0.366 3.634 25 O -0.329 6.329 26 H 0.071 0.929 27 H 0.197 0.803 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.237 0.763 33 H 0.168 0.832 34 H 0.170 0.830 35 H 0.175 0.825 36 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges 22.708 -17.221 0.010 28.499 hybrid contribution 0.673 0.519 0.010 0.850 sum 23.381 -16.702 0.020 28.734 Atomic orbital electron populations 1.69694 1.05132 1.26078 1.56824 1.24683 0.95274 0.97377 1.01524 0.86545 0.79273 0.84737 0.77951 1.20885 1.21562 1.20156 1.18986 0.80140 0.94880 1.44080 0.89060 1.42520 1.04183 1.01775 1.91388 1.20736 0.87387 0.90446 0.99424 1.21709 0.92557 0.84529 1.02955 1.45805 1.05657 1.10773 1.74156 1.18033 0.82407 0.88231 0.77523 1.90833 1.68087 1.32267 1.49076 1.20247 0.93739 0.93979 1.02562 1.21713 1.01122 0.90790 0.94336 1.20743 0.91130 0.99284 0.95381 1.20681 0.94875 0.93564 1.03555 1.20362 0.93555 0.94552 1.06892 1.20804 0.92304 0.97630 0.89984 1.18224 0.88919 0.81618 0.74436 1.90887 1.44475 1.54034 1.43243 1.44426 1.11070 1.09209 1.69908 1.18329 0.82990 0.87653 0.74389 1.90872 1.83581 1.14998 1.43492 0.92869 0.80326 0.94780 0.94846 0.90841 0.90839 0.76297 0.83210 0.83023 0.82527 0.72605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.48 13.97 55.49 0.78 -27.71 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.89 21.55 27.74 -169.99 -4.71 16.84 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.25 -6.84 10.47 -15.06 -0.16 -7.00 16 8 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 9 N -0.75 -16.90 5.41 -59.91 -0.32 -17.22 16 10 C 0.15 2.48 6.37 -4.04 -0.03 2.46 16 11 C 0.11 1.49 5.79 -4.04 -0.02 1.46 16 12 N -0.71 -7.49 5.51 -61.19 -0.34 -7.82 16 13 C 0.55 6.31 7.78 -12.25 -0.10 6.22 16 14 O -0.53 -8.10 16.34 5.34 0.09 -8.01 16 15 C -0.10 -0.84 5.88 -104.86 -0.62 -1.45 16 16 C -0.06 -0.33 9.53 -39.05 -0.37 -0.70 16 17 C -0.05 -0.24 10.08 -39.37 -0.40 -0.64 16 18 C -0.12 -0.84 6.41 -104.70 -0.67 -1.51 16 19 C -0.15 -1.17 6.39 -104.86 -0.67 -1.84 16 20 C 0.01 0.10 9.63 -38.94 -0.37 -0.27 16 21 C 0.58 4.73 8.45 -12.46 -0.11 4.63 16 22 O -0.46 -5.02 18.04 5.41 0.10 -4.92 16 23 N -0.68 -4.10 5.76 -13.18 -0.08 -4.18 16 24 C 0.58 4.24 8.47 -12.36 -0.10 4.14 16 25 O -0.46 -4.46 18.04 5.42 0.10 -4.36 16 26 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 27 H 0.36 8.05 5.53 -40.82 -0.23 7.83 16 28 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.40 2.90 6.48 -40.82 -0.26 2.64 16 33 H 0.15 0.41 6.36 -52.49 -0.33 0.08 16 34 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 35 H 0.16 1.42 7.65 -52.49 -0.40 1.02 16 36 H 0.43 1.58 8.96 -40.82 -0.37 1.21 16 LS Contribution 324.25 15.07 4.89 4.89 Total: -1.00 -35.56 324.25 -6.51 -42.07 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -3.30 Total: 4.80 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -3.71 Total: 5.63 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: 0.04 Total: -56.93 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: 0.28 Total: -17.29 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.56 -6.51 -42.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148344809.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.199 kcal (2) G-P(sol) polarization free energy of solvation -35.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds