Wall clock time and date at job start Tue Mar 31 2020 03:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34231 * 116.99896 * 2 1 4 4 O 1.20832 * 119.99723 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00225 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.32475 * 300.00401 * 5 3 2 7 7 C 1.53028 * 109.32407 * 59.64505 * 5 3 2 8 8 C 1.53972 * 108.82783 * 175.49911 * 7 5 3 9 9 H 1.08993 * 112.99759 * 168.08645 * 8 7 5 10 10 C 1.55424 * 106.41521 * 293.82037 * 8 7 5 11 11 C 1.55172 * 100.35511 * 73.37726 * 10 8 7 12 12 H 1.09001 * 112.48954 * 162.66502 * 11 10 8 13 13 C 1.52985 * 109.18032 * 180.44539 * 5 3 2 14 14 N 1.47793 * 104.25504 * 40.55070 * 11 10 8 15 15 S 1.65599 * 125.85673 * 153.55446 * 14 11 10 16 16 O 1.42093 * 106.40188 * 23.54228 * 15 14 11 17 17 O 1.42101 * 106.39927 * 156.46344 * 15 14 11 18 18 C 1.76197 * 107.21815 * 270.00000 * 15 14 11 19 19 H 1.08004 * 119.99977 * 0.02562 * 18 15 14 20 20 C 1.37878 * 120.00257 * 180.02562 * 18 15 14 21 21 N 1.31519 * 119.99615 * 359.97438 * 20 18 15 22 22 Si 1.86801 * 120.00281 * 180.02562 * 20 18 15 23 23 H 1.48496 * 109.47133 * 89.99606 * 22 20 18 24 24 H 1.48496 * 109.46755 * 209.99721 * 22 20 18 25 25 H 1.48504 * 109.46765 * 329.99539 * 22 20 18 26 26 C 1.47085 * 108.28299 * 333.53637 * 14 11 10 27 27 H 1.08992 * 109.47112 * 60.00178 * 1 2 3 28 28 H 1.08999 * 109.46695 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47383 * 299.99258 * 1 2 3 30 30 H 1.08996 * 109.58132 * 295.30296 * 7 5 3 31 31 H 1.09007 * 109.58042 * 55.56996 * 7 5 3 32 32 H 1.09000 * 111.23408 * 191.15117 * 10 8 7 33 33 H 1.08998 * 111.23879 * 315.60265 * 10 8 7 34 34 H 1.08997 * 109.53659 * 304.61639 * 13 5 3 35 35 H 1.08996 * 109.53706 * 64.84907 * 13 5 3 36 36 H 0.96997 * 119.99296 * 180.02562 * 21 20 18 37 37 H 1.09006 * 109.97130 * 241.74610 * 26 14 11 38 38 H 1.08993 * 109.97858 * 120.46851 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5663 1.2750 0.0006 6 1 3.9531 0.7804 0.8916 7 6 4.1107 0.5725 -1.2452 8 6 5.6385 0.7575 -1.2922 9 1 6.1224 0.1179 -2.0302 10 6 5.8907 2.2753 -1.5119 11 6 5.5246 2.8250 -0.1078 12 1 5.9111 3.8303 0.0602 13 6 3.9925 2.7442 0.0117 14 7 6.0964 1.8365 0.8304 15 16 6.5730 2.1394 2.3872 16 8 5.8515 3.2877 2.8114 17 8 6.5247 0.8947 3.0709 18 6 8.2698 2.6106 2.3308 19 1 8.7871 2.6538 1.3836 20 6 8.9374 2.9242 3.4957 21 7 8.3073 2.8721 4.6490 22 14 10.7362 3.4244 3.4359 23 1 10.8352 4.8974 3.2755 24 1 11.4052 3.0177 4.6977 25 1 11.3979 2.7557 2.2869 26 6 6.1690 0.5375 0.1444 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8900 30 1 3.8727 -0.4902 -1.1987 31 1 3.6605 1.0090 -2.1368 32 1 6.9356 2.4711 -1.7525 33 1 5.2290 2.6785 -2.2785 34 1 3.5336 3.2632 -0.8298 35 1 3.6748 3.2089 0.9450 36 1 8.7769 3.0930 5.4685 37 1 5.5477 -0.1927 0.6631 38 1 7.2019 0.1912 0.1110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963571.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:34:19 Heat of formation + Delta-G solvation = -173.561941 kcal Electronic energy + Delta-G solvation = -24292.140931 eV Core-core repulsion = 20647.010381 eV Total energy + Delta-G solvation = -3645.130549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.99170 -39.54126 -36.46415 -35.24293 -33.96111 -33.16312 -32.93151 -31.21272 -29.83613 -27.73033 -26.13154 -25.01557 -23.73156 -21.07131 -20.65416 -19.40489 -18.64990 -17.62235 -17.50532 -16.78540 -16.41818 -16.05630 -15.16665 -14.79545 -14.70555 -14.07656 -13.87974 -13.49088 -13.34303 -13.20504 -12.79589 -12.46734 -12.36829 -12.25608 -12.05495 -11.93567 -11.81515 -11.24581 -11.20821 -11.09837 -10.84405 -10.79802 -10.60943 -10.36467 -10.29344 -10.24767 -10.19252 -10.03204 -9.98471 -9.25157 -8.93312 -8.19295 -6.69866 -5.32220 2.22021 2.25739 2.73095 3.06452 3.13115 3.19362 4.05216 4.43284 4.53072 4.63222 4.68115 4.82126 5.00979 5.04163 5.08450 5.13547 5.25702 5.35831 5.41579 5.47820 5.58786 5.64061 5.70120 5.84270 5.95148 6.01653 6.12461 6.12659 6.25875 6.28080 6.34836 6.37646 6.43122 6.51496 6.93160 7.33270 7.46138 7.78531 7.97901 8.88800 10.23690 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.026604 B = 0.004797 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.215069 B = 5836.163977 C = 6231.016068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.507 6.507 5 C -0.081 4.081 6 H 0.116 0.884 7 C -0.102 4.102 8 C -0.098 4.098 9 H 0.102 0.898 10 C -0.127 4.127 11 C 0.155 3.845 12 H 0.104 0.896 13 C -0.119 4.119 14 N -1.018 6.018 15 S 2.725 3.275 16 O -0.998 6.998 17 O -1.002 7.002 18 C -1.021 5.021 19 H 0.102 0.898 20 C 0.132 3.868 21 N -0.847 5.847 22 Si 0.920 3.080 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.262 1.262 26 C 0.123 3.877 27 H 0.060 0.940 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.291 0.709 37 H 0.066 0.934 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.778 -5.082 -13.688 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.309 3.691 4 O -0.394 6.394 5 C -0.100 4.100 6 H 0.134 0.866 7 C -0.140 4.140 8 C -0.117 4.117 9 H 0.120 0.880 10 C -0.166 4.166 11 C 0.049 3.951 12 H 0.122 0.878 13 C -0.158 4.158 14 N -0.853 5.853 15 S 2.826 3.174 16 O -0.989 6.989 17 O -0.992 6.992 18 C -1.154 5.154 19 H 0.121 0.879 20 C -0.086 4.086 21 N -0.476 5.476 22 Si 0.744 3.256 23 H -0.192 1.192 24 H -0.200 1.200 25 H -0.186 1.186 26 C -0.003 4.003 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.591 -4.852 -12.619 16.019 hybrid contribution 1.207 0.423 -0.110 1.284 sum -7.384 -4.429 -12.729 15.368 Atomic orbital electron populations 1.23232 0.76856 1.03460 1.02418 1.86535 1.23056 1.33785 1.84175 1.24065 0.92255 0.81121 0.71708 1.90647 1.67222 1.36360 1.45216 1.21229 0.85780 1.00246 1.02702 0.86614 1.21786 0.95707 1.00712 0.95796 1.22635 0.94650 0.97336 0.97114 0.87987 1.23084 1.02154 0.94783 0.96576 1.21792 0.91220 0.93667 0.88459 0.87765 1.22101 0.96546 0.92926 1.04206 1.59432 1.79168 1.14941 1.31802 1.00231 0.75892 0.72908 0.68321 1.93368 1.75299 1.51849 1.78370 1.93359 1.89305 1.46619 1.69960 1.30638 1.21785 1.62368 1.00641 0.87943 1.24765 1.00791 0.89580 0.93423 1.69898 1.38827 1.39681 0.99227 0.86165 0.81242 0.79519 0.78645 1.19163 1.19956 1.18649 1.21707 1.00930 0.86110 0.91520 0.92107 0.88261 0.91958 0.90412 0.91266 0.90429 0.90332 0.90369 0.90064 0.89870 0.91561 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.56 101.05 1.07 1.40 16 2 O -0.36 -4.71 10.48 -39.26 -0.41 -5.12 16 3 C 0.47 7.01 7.25 36.01 0.26 7.27 16 4 O -0.51 -8.74 15.64 -18.76 -0.29 -9.04 16 5 C -0.08 -1.18 2.25 -91.77 -0.21 -1.39 16 6 H 0.12 1.90 5.96 -51.93 -0.31 1.59 16 7 C -0.10 -1.15 4.69 -26.21 -0.12 -1.27 16 8 C -0.10 -1.13 4.33 -87.93 -0.38 -1.51 16 9 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 10 C -0.13 -1.53 6.18 -24.29 -0.15 -1.68 16 11 C 0.16 2.53 4.06 -65.61 -0.27 2.26 16 12 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 13 C -0.12 -1.88 4.32 -26.28 -0.11 -1.99 16 14 N -1.02 -19.99 2.74 -103.29 -0.28 -20.27 16 15 S 2.72 72.19 5.23 -107.50 -0.56 71.63 16 16 O -1.00 -29.05 17.62 -57.17 -1.01 -30.06 16 17 O -1.00 -29.20 17.61 -57.17 -1.01 -30.20 16 18 C -1.02 -28.09 9.75 30.60 0.30 -27.79 16 19 H 0.10 2.58 7.81 -52.48 -0.41 2.17 16 20 C 0.13 3.70 5.46 -17.82 -0.10 3.60 16 21 N -0.85 -25.02 13.19 55.43 0.73 -24.29 16 22 Si 0.92 20.55 29.54 -169.99 -5.02 15.53 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 26 C 0.12 1.96 5.73 -2.82 -0.02 1.94 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 30 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.68 7.98 -51.93 -0.41 0.27 16 32 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.78 7.75 -51.93 -0.40 0.37 16 34 H 0.08 1.08 7.81 -51.93 -0.41 0.68 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.29 7.72 8.31 -40.82 -0.34 7.38 16 37 H 0.07 1.04 6.77 -51.93 -0.35 0.69 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 323.59 15.07 4.88 4.88 Total: -1.00 -36.20 323.59 -7.94 -44.14 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.23 Total: 1.98 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: 0.27 Total: -19.16 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.45 Total: -44.57 kcal Atomic # 8 Polarization: -71.70 SS G_CDS: -2.72 Total: -74.42 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 72.19 SS G_CDS: -0.56 Total: 71.63 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -36.20 -7.94 -44.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963571.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.424 kcal (2) G-P(sol) polarization free energy of solvation -36.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds