Wall clock time and date at job start Tue Mar 31 2020 03:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34228 * 116.99743 * 2 1 4 4 O 1.20823 * 120.00603 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99525 * 179.97438 * 3 2 1 6 6 O 1.42898 * 109.46234 * 35.02707 * 5 3 2 7 7 C 1.53040 * 109.45836 * 275.06368 * 5 3 2 8 8 C 1.53197 * 109.30961 * 178.61737 * 7 5 3 9 9 N 1.46930 * 108.77668 * 54.63646 * 8 7 5 10 10 C 1.34774 * 120.63018 * 126.36945 * 9 8 7 11 11 O 1.21282 * 119.99646 * 180.02562 * 10 9 8 12 12 C 1.50693 * 119.99945 * 0.02562 * 10 9 8 13 13 S 1.80999 * 109.46878 * 180.02562 * 12 10 9 14 14 C 1.76206 * 100.00078 * 180.02562 * 13 12 10 15 15 H 1.07997 * 119.99772 * 359.97438 * 14 13 12 16 16 C 1.38794 * 120.00326 * 180.02562 * 14 13 12 17 17 N 1.31638 * 119.99678 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00170 * 179.97438 * 16 14 13 19 19 H 1.48491 * 109.47074 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47157 * 120.00011 * 18 16 14 21 21 H 1.48507 * 109.47088 * 239.99754 * 18 16 14 22 22 C 1.46935 * 118.73557 * 306.39101 * 9 8 7 23 23 C 1.53042 * 109.45574 * 154.99883 * 5 3 2 24 24 H 1.08998 * 109.47228 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47189 * 300.00147 * 1 2 3 26 26 H 1.08999 * 109.46673 * 60.00494 * 1 2 3 27 27 H 0.96702 * 113.99989 * 299.99765 * 6 5 3 28 28 H 1.08994 * 109.49739 * 298.56449 * 7 5 3 29 29 H 1.08994 * 109.49579 * 58.66906 * 7 5 3 30 30 H 1.09004 * 109.58320 * 294.84925 * 8 7 5 31 31 H 1.08995 * 109.70235 * 174.49679 * 8 7 5 32 32 H 1.08995 * 109.47600 * 299.99710 * 12 10 9 33 33 H 1.09000 * 109.47184 * 60.00164 * 12 10 9 34 34 H 0.97005 * 119.99530 * 180.02562 * 17 16 14 35 35 H 1.09000 * 109.58469 * 293.81711 * 22 9 8 36 36 H 1.09000 * 109.58133 * 173.39472 * 22 9 8 37 37 H 1.09004 * 109.49481 * 301.33111 * 23 5 3 38 38 H 1.08991 * 109.50018 * 61.40220 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 -0.0005 5 6 3.5664 1.2748 0.0006 6 8 4.0999 0.1978 -0.7723 7 6 4.0816 1.1746 1.4382 8 6 5.6129 1.2203 1.4319 9 7 6.0470 2.4291 0.7182 10 6 6.8958 3.3010 1.2975 11 8 7.2463 4.2953 0.6980 12 6 7.4094 3.0403 2.6900 13 16 8.5197 4.3816 3.1844 14 6 8.9590 3.8350 4.8009 15 1 8.5518 2.9128 5.1883 16 6 9.8275 4.5902 5.5767 17 7 10.3234 5.7145 5.1046 18 14 10.2926 4.0111 7.2907 19 1 9.6051 2.7279 7.5832 20 1 11.7625 3.8138 7.3646 21 1 9.8794 5.0318 8.2872 22 6 5.5377 2.6693 -0.6390 23 6 4.0073 2.6074 -0.6094 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 3.8599 -0.6792 -0.4430 28 1 3.6951 2.0098 2.0222 29 1 3.7475 0.2357 1.8797 30 1 6.0027 0.3372 0.9256 31 1 5.9839 1.2478 2.4564 32 1 6.5700 2.9899 3.3834 33 1 7.9514 2.0948 2.7063 34 1 10.9306 6.2421 5.6468 35 1 5.9215 1.9044 -1.3140 36 1 5.8570 3.6542 -0.9800 37 1 3.6203 2.6882 -1.6252 38 1 3.6210 3.4290 -0.0064 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001254040906.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:33:41 Heat of formation + Delta-G solvation = -166.173152 kcal Electronic energy + Delta-G solvation = -22848.719803 eV Core-core repulsion = 19203.909656 eV Total energy + Delta-G solvation = -3644.810147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.36917 -39.82314 -38.11257 -36.93339 -35.50597 -32.43424 -32.24396 -31.54159 -29.16318 -28.39870 -25.86830 -25.42976 -23.64282 -22.39119 -20.82169 -19.28123 -18.54221 -17.78913 -17.58669 -16.90461 -16.67772 -15.88446 -15.62886 -15.35857 -14.83797 -14.80701 -14.52817 -13.99028 -13.89250 -13.73351 -13.36443 -12.94519 -12.81672 -12.68196 -12.45009 -12.38272 -11.97611 -11.86596 -11.55291 -11.44838 -11.25070 -11.07709 -11.02230 -10.85251 -10.74565 -10.30002 -9.80002 -9.36960 -9.07991 -8.57525 -8.22504 -6.50609 -6.22241 -3.92838 1.68602 2.14989 2.90267 3.04255 3.21096 3.25275 3.30481 3.56675 3.72944 4.02991 4.15627 4.19958 4.37196 4.67574 4.71869 4.76056 4.83764 5.03451 5.07323 5.12981 5.17179 5.21454 5.29782 5.43537 5.50810 5.61046 5.69810 5.82806 5.85166 5.92753 6.01897 6.09398 6.59138 7.00773 7.27922 7.52761 7.59250 8.34656 8.54194 9.23142 10.85231 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.026696 B = 0.003074 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.612811 B = 9107.927263 C = 9632.545556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.360 6.360 3 C 0.439 3.561 4 O -0.494 6.494 5 C 0.157 3.843 6 O -0.535 6.535 7 C -0.161 4.161 8 C 0.118 3.882 9 N -0.621 5.621 10 C 0.535 3.465 11 O -0.514 6.514 12 C -0.152 4.152 13 S -0.061 6.061 14 C -0.534 4.534 15 H 0.073 0.927 16 C 0.073 3.927 17 N -0.867 5.867 18 Si 0.919 3.081 19 H -0.272 1.272 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.120 3.880 23 C -0.112 4.112 24 H 0.103 0.897 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.387 0.613 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.268 0.732 35 H 0.076 0.924 36 H 0.100 0.900 37 H 0.086 0.914 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -15.539 -9.915 25.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.280 3.720 4 O -0.380 6.380 5 C 0.115 3.885 6 O -0.341 6.341 7 C -0.199 4.199 8 C -0.005 4.005 9 N -0.358 5.358 10 C 0.323 3.677 11 O -0.388 6.388 12 C -0.302 4.302 13 S 0.166 5.834 14 C -0.682 4.682 15 H 0.091 0.909 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.745 3.255 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.002 4.002 23 C -0.150 4.150 24 H 0.121 0.879 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.236 0.764 28 H 0.107 0.893 29 H 0.108 0.892 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.195 -13.105 -11.121 24.312 hybrid contribution -0.841 -2.030 2.192 3.104 sum -18.037 -15.135 -8.929 25.182 Atomic orbital electron populations 1.23305 0.75996 1.03879 1.02728 1.86466 1.23836 1.33475 1.83871 1.24921 0.92925 0.81747 0.72375 1.90697 1.66822 1.36326 1.44191 1.21149 0.82808 0.90974 0.93609 1.86627 1.75580 1.16803 1.55116 1.22647 0.98225 1.04675 0.94401 1.21574 0.91939 0.88212 0.98817 1.48120 1.47727 1.23636 1.16309 1.20343 0.77553 0.82019 0.87741 1.90697 1.56656 1.27009 1.64458 1.23561 1.04448 1.07077 0.95123 1.85438 1.54218 1.25583 1.18191 1.22892 1.33195 1.11325 1.00835 0.90896 1.24999 0.95147 0.94600 0.98887 1.70035 1.30002 1.12981 1.37230 0.86113 0.78340 0.78680 0.82331 1.19622 1.20564 1.20591 1.21442 0.91091 1.03873 0.83822 1.21911 0.97529 0.92877 1.02661 0.87875 0.91747 0.91777 0.76419 0.89322 0.89242 0.90390 0.88474 0.89278 0.89169 0.92230 0.90558 0.88200 0.89519 0.88707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.56 101.05 1.07 1.27 16 2 O -0.36 -2.96 10.00 -44.42 -0.44 -3.40 16 3 C 0.44 4.50 6.83 36.01 0.25 4.74 16 4 O -0.49 -6.50 15.87 -18.75 -0.30 -6.80 16 5 C 0.16 1.46 0.94 -91.73 -0.09 1.38 16 6 O -0.53 -4.27 11.62 -49.12 -0.57 -4.85 16 7 C -0.16 -1.38 5.07 -26.61 -0.13 -1.52 16 8 C 0.12 1.20 6.10 -3.71 -0.02 1.18 16 9 N -0.62 -8.67 2.97 -172.76 -0.51 -9.18 16 10 C 0.54 10.08 7.72 -10.99 -0.08 9.99 16 11 O -0.51 -11.70 15.27 5.56 0.08 -11.61 16 12 C -0.15 -3.02 4.50 36.00 0.16 -2.86 16 13 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 14 C -0.53 -15.07 9.50 30.94 0.29 -14.77 16 15 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 16 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 17 N -0.87 -26.08 13.22 55.49 0.73 -25.35 16 18 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 19 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 C 0.12 1.50 6.19 -3.71 -0.02 1.48 16 23 C -0.11 -1.22 4.62 -26.61 -0.12 -1.34 16 24 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 26 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 27 H 0.39 1.75 8.63 45.56 0.39 2.14 16 28 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.68 7.81 -51.93 -0.41 0.27 16 31 H 0.10 0.99 5.93 -51.93 -0.31 0.68 16 32 H 0.09 1.63 7.69 -51.92 -0.40 1.23 16 33 H 0.09 1.65 7.94 -51.92 -0.41 1.24 16 34 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.08 0.88 7.81 -51.93 -0.41 0.47 16 36 H 0.10 1.40 7.00 -51.93 -0.36 1.04 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.09 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 333.61 15.07 5.03 5.03 Total: -1.00 -36.14 333.61 -6.41 -42.55 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -4.39 Total: -0.27 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 1.20 Total: 1.53 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.22 Total: -34.53 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -1.23 Total: -26.66 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -36.14 -6.41 -42.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001254040906.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.627 kcal (2) G-P(sol) polarization free energy of solvation -36.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds