Wall clock time and date at job start Tue Mar 31 2020 04:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34953 * 126.03725 * 2 1 4 4 C 1.35312 * 107.74266 * 180.20624 * 3 2 1 5 5 C 1.50703 * 126.03521 * 179.76875 * 4 3 2 6 6 H 1.09002 * 109.47357 * 19.99780 * 5 4 3 7 7 C 1.53003 * 109.46951 * 259.99777 * 5 4 3 8 8 O 1.42895 * 109.47406 * 305.00096 * 7 5 4 9 9 N 1.46503 * 109.46994 * 139.99985 * 5 4 3 10 10 S 1.65600 * 119.99856 * 214.99660 * 9 5 4 11 11 O 1.42097 * 104.27433 * 181.07174 * 10 9 5 12 12 O 1.42103 * 104.28074 * 308.93102 * 10 9 5 13 13 C 1.81397 * 104.44751 * 65.00194 * 10 9 5 14 14 C 1.53002 * 109.47164 * 179.97438 * 13 10 9 15 15 C 1.50704 * 109.47145 * 180.02562 * 14 13 10 16 16 H 1.08004 * 119.99767 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99950 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99876 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00108 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46983 * 89.99696 * 19 17 15 21 21 H 1.48495 * 109.47357 * 209.99608 * 19 17 15 22 22 H 1.48497 * 109.47013 * 329.99889 * 19 17 15 23 23 C 1.39863 * 107.92527 * 359.64076 * 4 3 2 24 24 N 1.30837 * 108.19940 * 0.36269 * 23 4 3 25 25 H 1.08999 * 109.47001 * 90.00027 * 1 2 3 26 26 H 1.09001 * 109.47118 * 210.00454 * 1 2 3 27 27 H 1.08997 * 109.46734 * 329.99965 * 1 2 3 28 28 H 1.08002 * 126.12372 * 359.93597 * 3 2 1 29 29 H 1.09003 * 109.47058 * 65.00535 * 7 5 4 30 30 H 1.09005 * 109.46934 * 184.99983 * 7 5 4 31 31 H 0.96699 * 113.99905 * 180.02562 * 8 7 5 32 32 H 0.96999 * 119.99947 * 35.00548 * 9 5 4 33 33 H 1.09001 * 109.47324 * 299.99988 * 13 10 9 34 34 H 1.09004 * 109.47683 * 59.99767 * 13 10 9 35 35 H 1.08996 * 109.46882 * 299.99929 * 14 13 10 36 36 H 1.08997 * 109.47151 * 60.00276 * 14 13 10 37 37 H 0.96999 * 119.99359 * 180.02562 * 18 17 15 38 38 H 1.08001 * 125.90034 * 180.14354 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0913 0.0000 4 6 3.5437 0.6665 -0.0046 5 6 4.7679 1.5453 -0.0113 6 1 4.5015 2.5423 0.3396 7 6 5.3224 1.6367 -1.4344 8 8 5.5627 0.3210 -1.9374 9 7 5.7854 0.9720 0.8733 10 16 6.7785 1.9678 1.7476 11 8 7.6329 1.0784 2.4535 12 8 7.2991 2.8755 0.7863 13 6 5.6645 2.8247 2.8944 14 6 6.4730 3.7853 3.7688 15 6 5.5475 4.4968 4.7219 16 1 4.4885 4.2853 4.7053 17 6 6.0526 5.4184 5.6143 18 7 7.3421 5.6763 5.6341 19 14 4.9054 6.3009 6.7953 20 1 4.7903 5.5176 8.0517 21 1 5.4497 7.6484 7.1002 22 1 3.5642 6.4380 6.1728 23 6 3.5347 -0.7321 0.0008 24 7 2.2892 -1.1327 0.0005 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 1.9281 2.1194 -0.0010 29 1 4.6000 2.1439 -2.0739 30 1 6.2566 2.1984 -1.4250 31 1 5.9162 0.3025 -2.8373 32 1 5.8773 0.0092 0.9468 33 1 4.9217 3.3863 2.3279 34 1 5.1618 2.0934 3.5275 35 1 7.2155 3.2233 4.3353 36 1 6.9758 4.5167 3.1361 37 1 7.6974 6.3245 6.2622 38 1 4.4055 -1.3710 0.0012 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320211826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:22:16 Heat of formation + Delta-G solvation = -46.922968 kcal Electronic energy + Delta-G solvation = -22986.621945 eV Core-core repulsion = 19379.275625 eV Total energy + Delta-G solvation = -3607.346320 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33481 -37.56802 -36.47848 -35.38837 -34.90349 -33.88386 -33.05810 -31.15427 -30.58215 -28.15558 -26.57158 -25.59560 -22.81538 -21.75856 -21.19309 -20.23400 -18.76909 -17.76035 -17.34167 -17.02472 -16.34524 -15.85093 -15.52655 -15.37790 -14.89732 -14.60923 -14.53903 -14.17949 -13.75924 -13.53830 -13.30951 -12.87143 -12.73195 -12.54510 -12.46847 -11.85617 -11.73363 -11.54990 -11.46933 -11.43823 -11.08384 -10.95465 -10.69258 -10.41194 -10.36429 -9.94958 -9.81268 -9.51354 -9.47345 -9.01209 -8.50494 -8.49492 -6.12373 -4.17798 0.83225 1.77077 2.39868 2.69934 3.24530 3.25525 3.31764 3.34009 4.18681 4.29354 4.35566 4.40546 4.68338 4.74617 4.85258 4.89050 5.07042 5.11138 5.14947 5.22845 5.27422 5.36844 5.61323 5.65814 5.69298 5.76731 5.89160 6.22138 6.50612 6.55195 6.85714 7.20582 7.31271 7.37773 7.61036 7.63453 7.80632 8.18075 8.85584 9.46864 10.98690 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.014645 B = 0.004298 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.435677 B = 6513.248391 C = 7876.658796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.379 5.379 3 C 0.060 3.940 4 C -0.233 4.233 5 C 0.238 3.762 6 H 0.100 0.900 7 C 0.063 3.937 8 O -0.563 6.563 9 N -1.112 6.112 10 S 2.593 3.407 11 O -0.966 6.966 12 O -0.967 6.967 13 C -0.591 4.591 14 C 0.028 3.972 15 C -0.520 4.520 16 H 0.061 0.939 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.082 3.918 24 N -0.304 5.304 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.175 0.825 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.374 0.626 32 H 0.415 0.585 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.033 0.967 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -9.205 -15.168 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.087 4.087 4 C -0.246 4.246 5 C 0.128 3.872 6 H 0.118 0.882 7 C -0.017 4.017 8 O -0.367 6.367 9 N -0.869 5.869 10 S 2.690 3.310 11 O -0.957 6.957 12 O -0.957 6.957 13 C -0.724 4.724 14 C -0.011 4.011 15 C -0.559 4.559 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.198 1.198 23 C -0.104 4.104 24 N -0.125 5.125 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.105 0.895 28 H 0.193 0.807 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.220 0.780 32 H 0.249 0.751 33 H 0.135 0.865 34 H 0.139 0.861 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.137 -10.021 -14.643 21.498 hybrid contribution -0.556 1.162 0.391 1.346 sum -12.693 -8.858 -14.252 21.041 Atomic orbital electron populations 1.21827 0.74340 1.04517 1.03153 1.48418 1.06543 1.03866 1.57268 1.22309 0.90674 0.93579 1.02115 1.19943 0.93391 0.94475 1.16761 1.18916 0.84303 0.95180 0.88773 0.88206 1.22762 1.00061 0.84672 0.94181 1.86465 1.87687 1.27834 1.34756 1.55771 1.51910 1.20433 1.58741 1.05572 0.75633 0.74472 0.75338 1.93554 1.63668 1.63702 1.74763 1.93533 1.77135 1.65817 1.59236 1.30469 1.15087 1.12466 1.14412 1.18961 0.95118 0.92863 0.94186 1.21001 0.93890 1.22894 1.18124 0.92104 1.25063 0.95244 0.96754 0.97399 1.69958 1.11836 1.34123 1.36912 0.86481 0.80704 0.79007 0.81139 1.20485 1.21013 1.19827 1.23601 0.94780 0.94378 0.97659 1.77376 1.01732 1.08116 1.25279 0.90944 0.89395 0.89453 0.80748 0.93244 0.91489 0.78006 0.75145 0.86505 0.86068 0.94843 0.94793 0.92539 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.63 11.47 59.85 0.69 1.32 16 2 N -0.38 -3.97 4.01 -68.16 -0.27 -4.24 16 3 C 0.06 0.60 11.40 -17.22 -0.20 0.40 16 4 C -0.23 -2.65 4.84 -105.06 -0.51 -3.16 16 5 C 0.24 2.77 2.91 -69.08 -0.20 2.57 16 6 H 0.10 1.03 7.15 -51.93 -0.37 0.66 16 7 C 0.06 0.68 6.87 37.16 0.26 0.94 16 8 O -0.56 -5.84 12.53 -35.23 -0.44 -6.28 16 9 N -1.11 -14.91 5.29 -5.88 -0.03 -14.94 16 10 S 2.59 45.76 5.38 -107.50 -0.58 45.18 16 11 O -0.97 -20.28 18.08 -57.54 -1.04 -21.32 16 12 O -0.97 -19.16 17.05 -57.54 -0.98 -20.14 16 13 C -0.59 -11.10 5.90 37.16 0.22 -10.88 16 14 C 0.03 0.70 4.98 -27.88 -0.14 0.56 16 15 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 16 H 0.06 1.57 7.74 -52.48 -0.41 1.17 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 19 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 23 C 0.08 1.01 10.59 -17.37 -0.18 0.83 16 24 N -0.30 -3.94 12.58 30.62 0.39 -3.56 16 25 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.18 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.82 7.36 -51.93 -0.38 0.43 16 31 H 0.37 2.40 9.12 45.56 0.42 2.81 16 32 H 0.41 5.11 7.84 -34.47 -0.27 4.84 16 33 H 0.12 1.89 7.44 -51.92 -0.39 1.51 16 34 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 35 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.18 1.99 7.68 -52.49 -0.40 1.59 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -37.97 340.27 -6.92 -44.88 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.32 Total: 5.31 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -0.48 Total: -20.43 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: 0.82 Total: -48.32 kcal Atomic # 8 Polarization: -45.28 SS G_CDS: -2.46 Total: -47.75 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 45.76 SS G_CDS: -0.58 Total: 45.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.97 -6.92 -44.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320211826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.042 kcal (2) G-P(sol) polarization free energy of solvation -37.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds