Wall clock time and date at job start Tue Mar 31 2020 04:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 109.47471 * 2 1 4 4 N 1.30249 * 125.61996 * 89.99134 * 3 2 1 5 5 C 1.34485 * 108.70168 * 179.97438 * 4 3 2 6 6 C 1.50695 * 126.16549 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.47096 * 275.02368 * 6 5 4 8 8 S 1.65608 * 120.00079 * 164.99965 * 7 6 5 9 9 O 1.42099 * 106.40241 * 178.54028 * 8 7 6 10 10 O 1.42097 * 106.39895 * 311.46103 * 8 7 6 11 11 N 1.65596 * 107.21450 * 65.00239 * 8 7 6 12 12 C 1.46501 * 120.00140 * 270.00029 * 11 8 7 13 13 C 1.46506 * 120.00320 * 90.00284 * 11 8 7 14 14 C 1.50692 * 109.47063 * 94.99469 * 13 11 8 15 15 H 1.08003 * 120.00048 * 0.02562 * 14 13 11 16 16 C 1.37886 * 119.99900 * 180.02562 * 14 13 11 17 17 N 1.31510 * 119.99439 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00046 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47342 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47144 * 120.00243 * 18 16 14 21 21 H 1.48506 * 109.47077 * 240.00316 * 18 16 14 22 22 C 1.34324 * 107.66747 * 0.26723 * 5 4 3 23 23 O 1.33967 * 125.61588 * 269.96225 * 3 2 1 24 24 H 1.08995 * 109.47313 * 300.00621 * 1 2 3 25 25 H 1.08999 * 109.46542 * 60.00096 * 1 2 3 26 26 H 1.08996 * 109.46865 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47606 * 239.99791 * 2 1 3 28 28 H 1.09003 * 109.47261 * 119.99921 * 2 1 3 29 29 H 1.09002 * 109.47187 * 155.02850 * 6 5 4 30 30 H 1.09001 * 109.47274 * 35.02394 * 6 5 4 31 31 H 0.97002 * 120.00027 * 345.00475 * 7 6 5 32 32 H 1.08999 * 109.47596 * 89.99688 * 12 11 8 33 33 H 1.09002 * 109.47465 * 210.00505 * 12 11 8 34 34 H 1.09005 * 109.47295 * 330.00209 * 12 11 8 35 35 H 1.09000 * 109.46914 * 214.99823 * 13 11 8 36 36 H 1.09002 * 109.46223 * 334.99708 * 13 11 8 37 37 H 0.97007 * 119.99652 * 179.97438 * 17 16 14 38 38 H 1.08006 * 126.44385 * 179.73393 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2851 2.1360 1.0588 5 6 2.7147 3.3489 0.6674 6 6 3.1169 4.4846 1.5726 7 7 1.9261 5.2435 1.9626 8 16 1.9998 6.3058 3.2309 9 8 0.7126 6.8991 3.3327 10 8 2.6215 5.6093 4.3021 11 7 3.0402 7.5181 2.7948 12 6 4.4695 7.3998 3.0940 13 6 2.5315 8.7091 2.1100 14 6 2.2621 9.7934 3.1212 15 1 2.4513 9.6136 4.1692 16 6 1.7740 11.0152 2.7084 17 7 1.5431 11.2339 1.4324 18 14 1.4407 12.3595 3.9618 19 1 1.7799 11.8649 5.3203 20 1 2.2723 13.5484 3.6454 21 1 0.0043 12.7338 3.9162 22 6 2.7155 3.3672 -0.6757 23 8 2.2932 2.1561 -1.0891 24 1 -0.3634 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 3.8097 5.1410 1.0460 30 1 3.6011 4.0850 2.4637 31 1 1.0943 5.1236 1.4780 32 1 4.9761 6.9133 2.2605 33 1 4.8922 8.3928 3.2466 34 1 4.6035 6.8050 3.9976 35 1 3.2721 9.0588 1.3907 36 1 1.6071 8.4610 1.5882 37 1 1.1994 12.0933 1.1420 38 1 3.0031 4.1959 -1.3058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364865085.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:31 Heat of formation + Delta-G solvation = -56.947404 kcal Electronic energy + Delta-G solvation = -22813.099236 eV Core-core repulsion = 19205.318224 eV Total energy + Delta-G solvation = -3607.781012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.54951 -36.65861 -36.07882 -35.48372 -35.13888 -34.80494 -33.55430 -32.43188 -29.73379 -27.77887 -26.14409 -25.04673 -24.57761 -22.29500 -21.72812 -21.07775 -18.99003 -17.62874 -17.20365 -16.84631 -16.64649 -16.37898 -15.84170 -15.23419 -15.07608 -14.80665 -14.24769 -14.20411 -13.66623 -13.39255 -13.28227 -12.96306 -12.67939 -12.30151 -12.16749 -12.11598 -11.67605 -11.60247 -11.54528 -11.38669 -11.16567 -11.14460 -11.07108 -10.70893 -10.68621 -10.50760 -10.03306 -9.75224 -9.38187 -9.03234 -8.45048 -8.07434 -6.06914 -4.10498 1.10089 1.34091 2.41863 2.52359 3.31286 3.39018 3.44521 3.59976 3.69505 4.16785 4.45179 4.46708 4.58332 4.76548 4.79503 4.99344 5.06624 5.28375 5.29279 5.31919 5.40122 5.49098 5.63880 5.70920 5.73747 5.79777 5.91377 5.97732 6.09700 6.30396 6.55899 7.07551 7.24940 7.41382 7.55501 7.61105 7.91119 8.20350 8.92380 9.54826 11.01782 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027429 B = 0.003339 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.566132 B = 8384.000693 C = 8523.326554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.025 4.025 3 C 0.188 3.812 4 N -0.467 5.467 5 C -0.021 4.021 6 C 0.205 3.795 7 N -1.130 6.130 8 S 2.783 3.217 9 O -0.962 6.962 10 O -0.995 6.995 11 N -0.996 5.996 12 C 0.093 3.907 13 C 0.257 3.743 14 C -0.528 4.528 15 H 0.061 0.939 16 C 0.061 3.939 17 N -0.896 5.896 18 Si 0.897 3.103 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.055 4.055 23 O -0.202 6.202 24 H 0.065 0.935 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.413 0.587 32 H 0.038 0.962 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.624 -19.941 -7.042 21.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.063 4.063 3 C -0.020 4.020 4 N -0.197 5.197 5 C -0.142 4.142 6 C 0.078 3.922 7 N -0.888 5.888 8 S 2.790 3.210 9 O -0.945 6.945 10 O -0.978 6.978 11 N -0.839 5.839 12 C -0.054 4.054 13 C 0.135 3.865 14 C -0.568 4.568 15 H 0.079 0.921 16 C -0.141 4.141 17 N -0.536 5.536 18 Si 0.725 3.275 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.208 1.208 22 C -0.127 4.127 23 O -0.089 6.089 24 H 0.084 0.916 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.245 0.755 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 3.211 -20.078 -5.646 21.102 hybrid contribution -0.228 1.266 -0.785 1.507 sum 2.983 -18.811 -6.431 20.103 Atomic orbital electron populations 1.21794 0.93026 1.02981 1.03174 1.20057 0.96918 0.84218 1.05118 1.26389 0.99966 0.96989 0.78627 1.70376 1.15722 1.03415 1.30154 1.21699 1.05347 0.94428 0.92678 1.19356 0.87157 0.88135 0.97576 1.56302 1.18558 1.58718 1.55242 1.01928 0.73529 0.72339 0.73158 1.93646 1.39460 1.76079 1.85355 1.93528 1.78160 1.74182 1.51968 1.57625 1.17859 1.33263 1.75171 1.21389 0.81295 1.03356 0.99330 1.19060 0.94589 0.80527 0.92336 1.21544 1.43441 0.97468 0.94300 0.92078 1.24938 0.95165 0.98551 0.95437 1.69928 1.45287 1.24129 1.14217 0.86450 0.78039 0.81376 0.81635 1.19611 1.20977 1.20813 1.24957 1.04280 0.87299 0.96164 1.84457 1.63935 1.22671 1.37790 0.91565 0.92122 0.90886 0.88954 0.87603 0.90035 0.88882 0.75455 0.94332 0.90304 0.91472 0.94676 0.94433 0.92762 0.76330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.03 -0.17 6.56 -27.88 -0.18 -0.35 16 3 C 0.19 2.05 7.60 -12.95 -0.10 1.95 16 4 N -0.47 -6.32 11.29 -7.36 -0.08 -6.40 16 5 C -0.02 -0.26 6.50 -82.81 -0.54 -0.80 16 6 C 0.20 2.67 6.78 -5.20 -0.04 2.63 16 7 N -1.13 -17.47 6.05 -11.66 -0.07 -17.54 16 8 S 2.78 55.67 6.10 -107.50 -0.66 55.01 16 9 O -0.96 -23.29 17.11 -57.17 -0.98 -24.27 16 10 O -1.00 -21.09 16.21 -57.17 -0.93 -22.02 16 11 N -1.00 -20.30 3.23 -123.05 -0.40 -20.70 16 12 C 0.09 1.54 10.68 59.85 0.64 2.18 16 13 C 0.26 6.35 5.08 -5.19 -0.03 6.32 16 14 C -0.53 -14.82 9.38 -34.44 -0.32 -15.14 16 15 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.90 -26.06 13.29 55.43 0.74 -25.32 16 18 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.06 -0.57 12.08 29.35 0.35 -0.22 16 23 O -0.20 -2.20 10.78 5.33 0.06 -2.15 16 24 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.09 1.26 7.75 -51.93 -0.40 0.86 16 31 H 0.41 5.96 8.64 -34.48 -0.30 5.66 16 32 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.07 1.07 7.02 -51.93 -0.36 0.70 16 35 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 36 H 0.04 0.99 7.61 -51.93 -0.40 0.59 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.22 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 343.31 15.07 5.17 5.17 Total: -1.00 -36.17 343.31 -7.33 -43.51 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -5.23 Total: 0.21 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: 0.06 Total: -2.38 kcal Atomic # 7 Polarization: -70.15 SS G_CDS: 0.19 Total: -69.96 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.85 Total: -48.43 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.66 Total: 55.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.17 -7.33 -43.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364865085.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.441 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds