Wall clock time and date at job start Tue Mar 31 2020 03:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99770 * 2 1 4 4 H 1.48498 * 109.46926 * 95.31209 * 3 2 1 5 5 H 1.48502 * 109.46936 * 215.30991 * 3 2 1 6 6 H 1.48497 * 109.47369 * 335.30905 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00085 * 8.38641 * 7 2 1 9 9 C 1.50697 * 119.99793 * 188.38328 * 7 2 1 10 10 H 1.08998 * 109.47302 * 333.08421 * 9 7 2 11 11 C 1.50703 * 109.47118 * 213.08654 * 9 7 2 12 12 O 1.21282 * 119.99547 * 239.99749 * 11 9 7 13 13 N 1.34768 * 119.99979 * 59.99912 * 11 9 7 14 14 C 1.46508 * 120.00099 * 179.97438 * 13 11 9 15 15 C 1.50697 * 109.47078 * 179.97438 * 14 13 11 16 16 N 1.31702 * 126.18069 * 274.69089 * 15 14 13 17 17 C 1.34344 * 105.81248 * 179.86071 * 16 15 14 18 18 O 1.21902 * 126.55964 * 180.18175 * 17 16 15 19 19 O 1.34133 * 106.87081 * 0.40663 * 17 16 15 20 20 N 1.21339 * 109.54802 * 359.74266 * 19 17 16 21 21 H 0.97004 * 124.93422 * 179.97438 * 20 19 17 22 22 C 1.50704 * 109.47244 * 93.08470 * 9 7 2 23 23 C 1.38233 * 119.99760 * 53.81875 * 22 9 7 24 24 C 1.38236 * 119.99821 * 179.78368 * 23 22 9 25 25 C 1.38236 * 119.99998 * 0.44870 * 24 23 22 26 26 C 1.38232 * 119.99819 * 359.80888 * 25 24 23 27 27 C 1.38233 * 120.00233 * 359.97438 * 26 25 24 28 28 H 0.97000 * 120.00257 * 0.02562 * 1 2 3 29 29 H 0.96999 * 120.00222 * 0.02562 * 13 11 9 30 30 H 1.09002 * 109.47063 * 300.00390 * 14 13 11 31 31 H 1.08998 * 109.46765 * 60.00117 * 14 13 11 32 32 H 1.08002 * 120.00182 * 0.02562 * 23 22 9 33 33 H 1.07996 * 120.00135 * 180.27649 * 24 23 22 34 34 H 1.08001 * 120.00230 * 179.82899 * 25 24 23 35 35 H 1.08000 * 119.99778 * 180.02562 * 26 25 24 36 36 H 1.07998 * 120.00229 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6088 1.9816 1.3941 5 1 3.4861 1.4752 -0.8093 6 1 1.3950 2.6825 -0.5848 7 6 2.0045 -1.1941 0.0005 8 1 1.4732 -2.1244 -0.1355 9 6 3.4994 -1.2009 0.1908 10 1 3.9143 -0.2550 -0.1572 11 6 4.1012 -2.3343 -0.5994 12 8 4.7278 -3.2037 -0.0316 13 7 3.9430 -2.3818 -1.9369 14 6 4.5285 -3.4833 -2.7052 15 6 4.2083 -3.3023 -4.1666 16 7 3.1096 -3.6966 -4.7764 17 6 3.2512 -3.3281 -6.0605 18 8 2.4482 -3.5069 -6.9601 19 8 4.4474 -2.7302 -6.1642 20 7 4.9906 -2.7179 -5.0792 21 1 5.8656 -2.3392 -4.9003 22 6 3.8190 -1.3823 1.6524 23 6 3.2859 -2.4507 2.3490 24 6 3.5826 -2.6195 3.6885 25 6 4.4049 -1.7148 4.3337 26 6 4.9336 -0.6434 3.6384 27 6 4.6405 -0.4771 2.2977 28 1 -0.4850 0.8400 -0.0004 29 1 3.4421 -1.6862 -2.3911 30 1 5.6097 -3.4878 -2.5675 31 1 4.1140 -4.4295 -2.3573 32 1 2.6408 -3.1556 1.8457 33 1 3.1698 -3.4567 4.2317 34 1 4.6345 -1.8451 5.3809 35 1 5.5764 0.0632 4.1423 36 1 5.0539 0.3597 1.7544 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411948746.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:44 Heat of formation + Delta-G solvation = 34.480115 kcal Electronic energy + Delta-G solvation = -23965.433260 eV Core-core repulsion = 20226.172891 eV Total energy + Delta-G solvation = -3739.260369 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.83420 -39.61547 -38.18062 -38.12288 -36.55924 -34.10019 -33.75256 -32.52533 -31.59948 -30.18598 -28.76595 -27.17910 -24.28286 -23.65675 -22.46486 -21.90895 -21.19867 -20.28332 -19.63368 -18.67059 -17.25676 -17.15709 -16.36493 -16.26669 -16.16028 -15.64637 -14.81586 -14.58770 -14.20564 -14.12779 -13.84256 -13.57798 -13.15059 -12.88782 -12.74201 -12.63528 -12.19086 -12.03551 -11.92870 -11.81367 -11.25454 -11.11539 -10.73852 -10.51649 -10.36283 -10.03634 -9.68127 -9.34157 -9.19066 -8.94336 -8.82843 -8.19149 -7.90020 -6.37581 -4.42916 0.60436 1.51429 2.09097 2.15886 2.64661 2.89748 3.05264 3.13282 3.18612 3.25848 3.58928 3.74277 4.13540 4.37211 4.55589 4.92752 5.05537 5.28682 5.46774 5.49496 5.55095 5.65329 5.84780 5.86302 6.09763 6.17270 6.24254 6.36639 6.55609 6.66156 6.79000 7.10756 7.17697 7.20257 7.36967 7.51946 7.71028 7.71433 7.82532 8.12967 8.60633 8.76554 9.19026 10.73358 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015674 B = 0.004390 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.000604 B = 6376.580536 C = 7340.973986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.088 3.912 3 Si 0.864 3.136 4 H -0.266 1.266 5 H -0.265 1.265 6 H -0.284 1.284 7 C -0.519 4.519 8 H 0.085 0.915 9 C 0.027 3.973 10 H 0.071 0.929 11 C 0.543 3.457 12 O -0.550 6.550 13 N -0.727 5.727 14 C 0.190 3.810 15 C 0.344 3.656 16 N -0.528 5.528 17 C 0.557 3.443 18 O -0.467 6.467 19 O -0.083 6.083 20 N -0.495 5.495 21 H 0.471 0.529 22 C -0.030 4.030 23 C -0.071 4.071 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.135 4.135 28 H 0.270 0.730 29 H 0.412 0.588 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.118 0.882 33 H 0.111 0.889 34 H 0.109 0.891 35 H 0.109 0.891 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.956 -1.538 -2.215 14.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.118 4.118 3 Si 0.691 3.309 4 H -0.191 1.191 5 H -0.190 1.190 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.103 0.897 9 C 0.006 3.994 10 H 0.089 0.911 11 C 0.333 3.667 12 O -0.427 6.427 13 N -0.384 5.384 14 C 0.064 3.936 15 C 0.074 3.926 16 N -0.289 5.289 17 C 0.306 3.694 18 O -0.347 6.347 19 O -0.105 6.105 20 N -0.163 5.163 21 H 0.325 0.675 22 C -0.031 4.031 23 C -0.089 4.089 24 C -0.147 4.147 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.153 4.153 28 H 0.080 0.920 29 H 0.248 0.752 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.136 0.864 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 13.162 -2.407 -2.489 13.610 hybrid contribution 0.840 1.840 -0.603 2.111 sum 14.002 -0.567 -3.092 14.351 Atomic orbital electron populations 1.69869 1.06239 1.27650 1.47122 1.24987 0.94690 0.98735 0.93405 0.87009 0.80080 0.84157 0.79662 1.19064 1.19007 1.20978 1.20525 0.87022 0.95735 1.52340 0.89661 1.18470 0.98731 0.93700 0.88535 0.91148 1.21326 0.77145 0.87741 0.80502 1.90635 1.41718 1.40778 1.69599 1.45840 1.57926 1.26727 1.07876 1.19857 1.00484 0.95245 0.78026 1.25579 0.85803 0.85375 0.95827 1.73505 1.20579 1.30848 1.04017 1.21965 0.79358 0.79097 0.88964 1.91185 1.40685 1.58293 1.44569 1.85252 1.36047 1.71918 1.17321 1.42541 1.19779 1.54466 0.99530 0.67493 1.20017 0.92900 0.93551 0.96607 1.20857 0.97547 0.97195 0.93298 1.21046 0.99240 0.99253 0.95161 1.20879 0.99928 0.96134 0.99041 1.20879 1.01033 0.98241 0.94577 1.20948 0.99629 0.99747 0.94993 0.91953 0.75187 0.88271 0.86479 0.86361 0.87066 0.87317 0.87274 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.13 13.96 55.43 0.77 -23.36 16 2 C 0.09 2.22 5.47 -17.82 -0.10 2.12 16 3 Si 0.86 18.71 27.31 -169.99 -4.64 14.07 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.26 -5.16 6.41 56.52 0.36 -4.80 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.52 -12.46 8.00 -34.44 -0.28 -12.74 16 8 H 0.09 2.29 8.06 -52.49 -0.42 1.86 16 9 C 0.03 0.55 1.98 -94.07 -0.19 0.37 16 10 H 0.07 1.38 4.82 -51.93 -0.25 1.13 16 11 C 0.54 9.83 7.04 -10.99 -0.08 9.75 16 12 O -0.55 -10.83 15.42 5.56 0.09 -10.75 16 13 N -0.73 -10.34 5.45 -61.47 -0.33 -10.68 16 14 C 0.19 1.94 6.30 -5.19 -0.03 1.91 16 15 C 0.34 3.58 7.60 -155.65 -1.18 2.39 16 16 N -0.53 -7.90 11.55 -14.53 -0.17 -8.07 16 17 C 0.56 8.71 9.62 53.44 0.51 9.23 16 18 O -0.47 -9.03 18.07 -19.17 -0.35 -9.38 16 19 O -0.08 -0.93 11.35 -7.36 -0.08 -1.02 16 20 N -0.50 -3.73 6.79 32.12 0.22 -3.52 16 21 H 0.47 1.28 8.96 -40.82 -0.37 0.91 16 22 C -0.03 -0.61 4.30 -104.62 -0.45 -1.06 16 23 C -0.07 -1.44 8.31 -39.58 -0.33 -1.77 16 24 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 25 C -0.14 -2.32 10.05 -39.58 -0.40 -2.72 16 26 C -0.13 -2.16 10.05 -39.59 -0.40 -2.56 16 27 C -0.13 -2.52 9.67 -39.58 -0.38 -2.90 16 28 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.41 5.90 8.35 -40.82 -0.34 5.56 16 30 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.12 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.12 2.49 7.89 -52.49 -0.41 2.08 16 33 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 36 H 0.11 1.82 7.96 -52.49 -0.42 1.40 16 LS Contribution 323.74 15.07 4.88 4.88 Total: -1.00 -33.55 323.74 -6.81 -40.36 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -3.50 Total: 8.11 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.69 Total: -0.66 kcal Atomic # 7 Polarization: -46.11 SS G_CDS: 0.49 Total: -45.62 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.34 Total: -21.14 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -4.64 Total: 14.07 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.55 -6.81 -40.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411948746.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.839 kcal (2) G-P(sol) polarization free energy of solvation -33.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds