Wall clock time and date at job start Tue Mar 31 2020 03:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99791 * 2 1 4 4 H 1.48501 * 109.47227 * 239.99820 * 3 2 1 5 5 H 1.48497 * 109.47117 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46807 * 120.00092 * 3 2 1 7 7 C 1.37878 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99860 * 185.18938 * 7 2 1 9 9 C 1.50704 * 119.99841 * 5.19548 * 7 2 1 10 10 H 1.09001 * 109.47215 * 24.88126 * 9 7 2 11 11 C 1.50700 * 109.46921 * 144.87877 * 9 7 2 12 12 O 1.21284 * 120.00023 * 119.99386 * 11 9 7 13 13 N 1.34779 * 120.00222 * 300.00124 * 11 9 7 14 14 C 1.46496 * 120.00031 * 180.02562 * 13 11 9 15 15 C 1.50705 * 109.47176 * 179.97438 * 14 13 11 16 16 N 1.31695 * 126.17753 * 274.68958 * 15 14 13 17 17 C 1.34343 * 105.81244 * 179.85591 * 16 15 14 18 18 O 1.21908 * 126.56618 * 180.18059 * 17 16 15 19 19 O 1.34139 * 106.86909 * 0.40304 * 17 16 15 20 20 N 1.21337 * 109.54690 * 359.74341 * 19 17 16 21 21 H 0.97006 * 124.93635 * 179.97438 * 20 19 17 22 22 C 1.50697 * 109.47011 * 264.87726 * 9 7 2 23 23 C 1.38241 * 119.99990 * 306.01691 * 22 9 7 24 24 C 1.38234 * 119.99835 * 179.80830 * 23 22 9 25 25 C 1.38233 * 119.99866 * 0.39620 * 24 23 22 26 26 C 1.38240 * 120.00335 * 359.85325 * 25 24 23 27 27 C 1.38233 * 119.99762 * 359.95742 * 26 25 24 28 28 H 0.97003 * 120.00237 * 0.02562 * 1 2 3 29 29 H 0.97000 * 120.00061 * 359.97438 * 13 11 9 30 30 H 1.09001 * 109.47338 * 299.99471 * 14 13 11 31 31 H 1.09003 * 109.47204 * 59.99455 * 14 13 11 32 32 H 1.08002 * 119.99717 * 359.97438 * 23 22 9 33 33 H 1.07997 * 119.99896 * 180.22927 * 24 23 22 34 34 H 1.08002 * 120.00124 * 179.83640 * 25 24 23 35 35 H 1.07993 * 120.00172 * 179.97438 * 26 25 24 36 36 H 1.08001 * 119.99960 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0812 -1.1960 0.0841 9 6 1.2556 -2.4964 -0.1193 10 1 0.3033 -2.3235 -0.6205 11 6 2.0745 -3.4754 -0.9206 12 8 2.4203 -4.5264 -0.4236 13 7 2.4227 -3.1832 -2.1894 14 6 3.2182 -4.1351 -2.9684 15 6 3.4689 -3.5730 -4.3441 16 7 2.6637 -3.6693 -5.3818 17 6 3.2827 -3.0268 -6.3862 18 8 2.8660 -2.8839 -7.5229 19 8 4.4492 -2.5770 -5.9003 20 7 4.5510 -2.8915 -4.7328 21 1 5.3080 -2.6797 -4.1644 22 6 1.0047 -3.0588 1.2561 23 6 2.0595 -3.2436 2.1303 24 6 1.8288 -3.7558 3.3934 25 6 0.5444 -4.0907 3.7793 26 6 -0.5098 -3.9107 2.9033 27 6 -0.2796 -3.3949 1.6416 28 1 -0.4850 0.8400 -0.0004 29 1 2.1459 -2.3428 -2.5870 30 1 4.1706 -4.3085 -2.4674 31 1 2.6762 -5.0769 -3.0544 32 1 3.0635 -2.9854 1.8274 33 1 2.6523 -3.8967 4.0776 34 1 0.3644 -4.4933 4.7652 35 1 -1.5131 -4.1728 3.2047 36 1 -1.1030 -3.2547 0.9571 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411948830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:44:48 Heat of formation + Delta-G solvation = 29.026283 kcal Electronic energy + Delta-G solvation = -23903.400677 eV Core-core repulsion = 20163.903812 eV Total energy + Delta-G solvation = -3739.496865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.82513 -39.43782 -38.16546 -37.96014 -36.51572 -34.01780 -33.77343 -32.49101 -31.21525 -30.00309 -28.60095 -26.88546 -24.29846 -23.90961 -22.43347 -21.67307 -21.03777 -20.24413 -19.60787 -18.65412 -17.19858 -16.81293 -16.33588 -16.08271 -16.01999 -15.54562 -14.68188 -14.59624 -14.17898 -13.96432 -13.83946 -13.61656 -13.01335 -12.83243 -12.48676 -12.39737 -12.02879 -11.84963 -11.73305 -11.67248 -11.17125 -11.11903 -10.74531 -10.53142 -10.36101 -10.12130 -9.57558 -9.33205 -9.00225 -8.85611 -8.79058 -8.01137 -7.69600 -6.39396 -4.47941 0.62739 1.54618 2.30844 2.33016 2.64845 2.92882 3.09935 3.16515 3.18563 3.40431 3.67177 3.78014 4.15660 4.40539 4.74328 4.97686 5.12784 5.30765 5.47902 5.67036 5.72403 5.82603 6.03477 6.12396 6.15400 6.41914 6.51350 6.65706 6.76896 6.88653 7.07274 7.31089 7.36374 7.36870 7.48797 7.64348 7.72079 7.84742 7.89170 8.01866 8.54601 8.89142 9.18791 10.68601 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.013759 B = 0.004454 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.598010 B = 6284.298073 C = 7548.614782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.075 3.925 3 Si 0.898 3.102 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.063 0.937 9 C 0.054 3.946 10 H 0.093 0.907 11 C 0.536 3.464 12 O -0.557 6.557 13 N -0.728 5.728 14 C 0.189 3.811 15 C 0.347 3.653 16 N -0.536 5.536 17 C 0.557 3.443 18 O -0.471 6.471 19 O -0.082 6.082 20 N -0.492 5.492 21 H 0.473 0.527 22 C -0.012 4.012 23 C -0.085 4.085 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.131 4.131 27 C -0.116 4.116 28 H 0.269 0.731 29 H 0.412 0.588 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 -4.943 -1.029 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.131 4.131 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.081 0.919 9 C 0.033 3.967 10 H 0.111 0.889 11 C 0.326 3.674 12 O -0.434 6.434 13 N -0.385 5.385 14 C 0.063 3.937 15 C 0.077 3.923 16 N -0.298 5.298 17 C 0.306 3.694 18 O -0.351 6.351 19 O -0.104 6.104 20 N -0.159 5.159 21 H 0.327 0.673 22 C -0.013 4.013 23 C -0.104 4.104 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.134 4.134 28 H 0.079 0.921 29 H 0.248 0.752 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.124 0.876 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.996 -5.622 -1.735 9.141 hybrid contribution 1.264 1.939 -0.019 2.315 sum 8.259 -3.683 -1.754 9.212 Atomic orbital electron populations 1.69890 1.06017 1.27804 1.46972 1.24980 0.94907 0.99485 0.93690 0.86549 0.79642 0.82451 0.78830 1.20062 1.21006 1.19914 1.20609 0.93142 0.88298 1.53941 0.91879 1.18106 0.97856 0.91857 0.88888 0.88935 1.21844 0.78640 0.87043 0.79836 1.90623 1.56127 1.26547 1.70151 1.45908 1.56486 1.21946 1.14155 1.19859 0.99427 0.94422 0.80015 1.25603 0.82295 0.86051 0.98382 1.73452 1.27294 1.29400 0.99610 1.21953 0.77150 0.80160 0.90126 1.91178 1.65505 1.61585 1.16830 1.85253 1.45368 1.68715 1.11071 1.42577 1.22119 1.49776 1.01436 0.67311 1.19969 0.92256 0.92052 0.96980 1.20797 0.98927 0.97737 0.92904 1.20950 0.96300 1.01376 0.96668 1.20815 0.93355 1.03414 0.98991 1.20916 0.97987 1.01397 0.94642 1.20997 0.96932 0.99273 0.96231 0.92064 0.75180 0.88347 0.86735 0.87155 0.87597 0.87698 0.87506 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -21.83 12.84 55.43 0.71 -21.12 16 2 C 0.08 1.78 5.45 -17.82 -0.10 1.68 16 3 Si 0.90 18.62 29.54 -169.99 -5.02 13.60 16 4 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 5 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 7 C -0.52 -11.76 7.47 -34.44 -0.26 -12.02 16 8 H 0.06 1.40 7.82 -52.49 -0.41 0.99 16 9 C 0.05 1.15 2.38 -94.08 -0.22 0.93 16 10 H 0.09 2.13 7.13 -51.93 -0.37 1.76 16 11 C 0.54 10.02 7.04 -10.98 -0.08 9.95 16 12 O -0.56 -11.38 15.42 5.55 0.09 -11.29 16 13 N -0.73 -10.61 5.45 -61.47 -0.33 -10.95 16 14 C 0.19 1.99 6.30 -5.19 -0.03 1.96 16 15 C 0.35 3.66 7.60 -155.65 -1.18 2.48 16 16 N -0.54 -7.78 11.55 -14.53 -0.17 -7.95 16 17 C 0.56 8.64 9.62 53.44 0.51 9.15 16 18 O -0.47 -8.96 18.07 -19.17 -0.35 -9.31 16 19 O -0.08 -0.95 11.35 -7.37 -0.08 -1.03 16 20 N -0.49 -4.03 6.79 32.12 0.22 -3.81 16 21 H 0.47 1.80 8.96 -40.82 -0.37 1.44 16 22 C -0.01 -0.25 4.30 -104.62 -0.45 -0.70 16 23 C -0.09 -1.76 8.31 -39.58 -0.33 -2.09 16 24 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.15 -2.58 10.05 -39.58 -0.40 -2.98 16 26 C -0.13 -2.40 10.05 -39.58 -0.40 -2.79 16 27 C -0.12 -2.38 9.67 -39.58 -0.38 -2.76 16 28 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 29 H 0.41 6.08 8.35 -40.82 -0.34 5.74 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.11 2.24 7.89 -52.49 -0.41 1.83 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.10 1.52 8.06 -52.49 -0.42 1.09 16 35 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 36 H 0.11 2.24 7.96 -52.49 -0.42 1.82 16 LS Contribution 327.46 15.07 4.93 4.93 Total: -1.00 -31.28 327.46 -7.28 -38.56 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -3.57 Total: 8.40 kcal Atomic # 6 Polarization: 3.65 SS G_CDS: -3.71 Total: -0.06 kcal Atomic # 7 Polarization: -44.25 SS G_CDS: 0.43 Total: -43.82 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.34 Total: -21.63 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -5.02 Total: 13.60 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.28 -7.28 -38.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411948830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.589 kcal (2) G-P(sol) polarization free energy of solvation -31.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds