Wall clock time and date at job start Tue Mar 31 2020 04:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46509 * 109.47166 * 2 1 4 4 C 1.46497 * 119.99711 * 274.06248 * 3 2 1 5 5 C 1.50695 * 109.47369 * 280.92681 * 4 3 2 6 6 H 1.08008 * 119.99697 * 3.26527 * 5 4 3 7 7 C 1.37879 * 120.00565 * 183.26158 * 5 4 3 8 8 N 1.31515 * 119.99420 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00333 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47233 * 59.99820 * 9 7 5 11 11 H 1.48502 * 109.46933 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.46710 * 299.99515 * 9 7 5 13 13 S 1.65603 * 119.99939 * 94.06078 * 3 2 1 14 14 O 1.42095 * 106.40052 * 336.47028 * 13 3 2 15 15 O 1.42101 * 106.40262 * 203.55182 * 13 3 2 16 16 N 1.65595 * 107.21652 * 90.01072 * 13 3 2 17 17 C 1.46505 * 119.99976 * 65.59985 * 16 13 3 18 18 C 1.50702 * 109.46942 * 164.33294 * 17 16 13 19 19 C 1.34331 * 126.44338 * 90.02808 * 18 17 16 20 20 N 1.34478 * 107.66613 * 179.97438 * 19 18 17 21 21 C 1.30259 * 108.70299 * 359.97438 * 20 19 18 22 22 C 1.50694 * 125.62168 * 179.97438 * 21 20 19 23 23 O 1.33970 * 108.75830 * 359.97438 * 21 20 19 24 24 H 1.09007 * 109.47024 * 305.05096 * 1 2 3 25 25 H 1.08999 * 109.47441 * 65.04691 * 1 2 3 26 26 H 1.08994 * 109.46855 * 185.05179 * 1 2 3 27 27 H 1.08996 * 109.46997 * 240.00404 * 2 1 3 28 28 H 1.09000 * 109.47176 * 119.99870 * 2 1 3 29 29 H 1.09002 * 109.47282 * 40.93564 * 4 3 2 30 30 H 1.09005 * 109.46773 * 160.93213 * 4 3 2 31 31 H 0.97004 * 119.99895 * 179.97438 * 8 7 5 32 32 H 0.96998 * 120.00388 * 245.60349 * 16 13 3 33 33 H 1.09001 * 109.47069 * 44.33079 * 17 16 13 34 34 H 1.09003 * 109.47024 * 284.32761 * 17 16 13 35 35 H 1.07994 * 126.16603 * 359.94993 * 19 18 17 36 36 H 1.09002 * 109.47269 * 270.02337 * 22 21 20 37 37 H 1.09003 * 109.47104 * 30.02089 * 22 21 20 38 38 H 1.08994 * 109.47600 * 150.02171 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1778 2.1018 -1.2656 5 6 3.4576 1.6683 -1.9327 6 1 4.0625 0.8921 -1.4876 7 6 3.8564 2.2625 -3.1112 8 7 3.1195 3.2072 -3.6535 9 14 5.4424 1.7246 -3.9385 10 1 5.3604 0.2805 -4.2746 11 1 5.6442 2.5120 -5.1813 12 1 6.5840 1.9543 -3.0168 13 16 2.3901 2.1281 1.4306 14 8 1.6493 1.4548 2.4390 15 8 2.2870 3.5252 1.1926 16 7 3.9878 1.8234 1.7418 17 6 5.0228 2.3684 0.8598 18 6 6.3618 2.2870 1.5464 19 6 7.2281 1.2620 1.4870 20 7 8.2966 1.5868 2.2361 21 6 8.1060 2.7708 2.7445 22 6 9.0656 3.5038 3.6461 23 8 6.9162 3.2296 2.3338 24 1 -0.3633 0.5902 0.8413 25 1 -0.3634 0.4335 -0.9317 26 1 -0.3633 -1.0236 0.0905 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.3340 1.8796 -1.9189 30 1 2.2144 3.1737 -1.0712 31 1 3.4001 3.6255 -4.4824 32 1 4.2384 1.2841 2.5081 33 1 4.7943 3.4095 0.6314 34 1 5.0529 1.7917 -0.0647 35 1 7.0909 0.3428 0.9370 36 1 8.8498 3.2552 4.6852 37 1 10.0871 3.2082 3.4065 38 1 8.9542 4.5779 3.4988 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001414278656.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:04 Heat of formation + Delta-G solvation = -58.361390 kcal Electronic energy + Delta-G solvation = -23657.577790 eV Core-core repulsion = 20049.735462 eV Total energy + Delta-G solvation = -3607.842327 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.27379 -36.76512 -36.12502 -35.34782 -35.27708 -34.70245 -32.79836 -31.95595 -29.98801 -28.53530 -26.70838 -24.77069 -23.21967 -22.22773 -21.75967 -21.02224 -18.99419 -17.51586 -17.08799 -16.82971 -16.60227 -16.43699 -15.69514 -15.19099 -14.61072 -14.33194 -13.93324 -13.84651 -13.48723 -13.26566 -13.17336 -12.95137 -12.82158 -12.40672 -12.12273 -12.04670 -11.74747 -11.64614 -11.51436 -11.39237 -11.23390 -11.10900 -11.02630 -10.58076 -10.52229 -10.42675 -10.10432 -9.90454 -9.23770 -8.72955 -8.58876 -8.13384 -6.20351 -4.28582 1.07606 1.54029 2.67801 2.69345 3.19739 3.26191 3.27610 3.51258 4.03234 4.09042 4.27418 4.73590 5.00705 5.06064 5.12752 5.17879 5.21881 5.35291 5.38900 5.52838 5.65073 5.73608 5.79550 5.95378 6.08553 6.15811 6.16674 6.30754 6.36656 6.63010 6.66121 7.13592 7.30326 7.36272 7.59147 7.74251 7.76038 8.05812 8.75801 9.37831 10.87082 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.011184 B = 0.006597 C = 0.004678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2503.050001 B = 4243.275190 C = 5984.580446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.547 4.547 6 H 0.064 0.936 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.889 3.111 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.274 1.274 13 S 2.786 3.214 14 O -0.995 6.995 15 O -0.977 6.977 16 N -1.129 6.129 17 C 0.201 3.799 18 C -0.044 4.044 19 C -0.026 4.026 20 N -0.486 5.486 21 C 0.181 3.819 22 C -0.055 4.055 23 O -0.196 6.196 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.267 0.733 32 H 0.409 0.591 33 H 0.098 0.902 34 H 0.127 0.873 35 H 0.187 0.813 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.988 -3.157 10.229 12.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.004 3.996 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.586 4.586 6 H 0.082 0.918 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.716 3.284 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.199 1.199 13 S 2.794 3.206 14 O -0.979 6.979 15 O -0.961 6.961 16 N -0.888 5.888 17 C 0.076 3.924 18 C -0.098 4.098 19 C -0.166 4.166 20 N -0.217 5.217 21 C -0.026 4.026 22 C -0.113 4.113 23 O -0.083 6.083 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.242 0.758 33 H 0.117 0.883 34 H 0.144 0.856 35 H 0.204 0.796 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.834 -2.665 10.543 12.341 hybrid contribution 0.683 -0.423 -0.761 1.107 sum 6.517 -3.089 9.782 12.153 Atomic orbital electron populations 1.22200 0.96919 1.01376 1.02369 1.20986 0.93657 0.82703 1.02246 1.57733 1.78529 1.23194 1.23802 1.19241 0.97296 0.92567 0.78928 1.21477 1.07499 1.21579 1.08069 0.91772 1.24954 0.97088 0.94674 0.96909 1.69919 1.37938 1.24599 1.19634 0.86710 0.83612 0.78844 0.79237 1.20070 1.21116 1.19892 1.01772 0.72400 0.73729 0.72744 1.93558 1.69333 1.76443 1.58595 1.93585 1.85710 1.31151 1.85620 1.56165 1.25119 1.68276 1.39190 1.19926 0.78541 1.02675 0.91292 1.23669 0.98864 0.89083 0.98188 1.23160 0.90283 1.01073 1.02058 1.70447 1.26495 1.12643 1.12065 1.26305 0.85469 0.91312 0.99482 1.20224 0.95293 0.99510 0.96227 1.84429 1.29849 1.43070 1.50955 0.92676 0.92115 0.92349 0.89934 0.91931 0.94535 0.92705 0.92360 0.75843 0.88342 0.85583 0.79607 0.89077 0.88266 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.21 16 2 C 0.13 2.15 6.01 -4.04 -0.02 2.13 16 3 N -0.99 -19.15 2.84 -115.66 -0.33 -19.48 16 4 C 0.24 5.60 5.48 -5.20 -0.03 5.57 16 5 C -0.55 -13.06 7.94 -34.44 -0.27 -13.33 16 6 H 0.06 1.44 6.74 -52.48 -0.35 1.08 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.88 -24.02 13.29 55.43 0.74 -23.29 16 9 Si 0.89 19.52 29.54 -169.99 -5.02 14.49 16 10 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 13 S 2.79 52.97 6.11 -107.50 -0.66 52.31 16 14 O -1.00 -19.60 17.09 -57.17 -0.98 -20.57 16 15 O -0.98 -21.97 16.09 -57.17 -0.92 -22.89 16 16 N -1.13 -18.07 6.04 -11.65 -0.07 -18.14 16 17 C 0.20 3.38 6.71 -5.19 -0.03 3.35 16 18 C -0.04 -0.69 6.78 -35.69 -0.24 -0.93 16 19 C -0.03 -0.39 11.80 -17.77 -0.21 -0.60 16 20 N -0.49 -7.36 11.29 -11.10 -0.13 -7.49 16 21 C 0.18 2.45 8.34 -12.95 -0.11 2.34 16 22 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 23 O -0.20 -3.06 10.78 5.36 0.06 -3.00 16 24 H 0.05 0.88 8.11 -51.93 -0.42 0.46 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.35 8.05 -51.93 -0.42 0.93 16 28 H 0.06 0.92 7.64 -51.93 -0.40 0.52 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 1.41 6.83 -51.93 -0.35 1.06 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.41 5.58 8.65 -34.47 -0.30 5.29 16 33 H 0.10 1.79 7.72 -51.93 -0.40 1.39 16 34 H 0.13 2.19 5.58 -51.93 -0.29 1.90 16 35 H 0.19 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 338.21 15.07 5.10 5.10 Total: -1.00 -31.58 338.21 -7.50 -39.07 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -5.03 Total: 6.02 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -0.26 Total: -2.12 kcal Atomic # 7 Polarization: -68.61 SS G_CDS: 0.21 Total: -68.40 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -1.84 Total: -46.47 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 52.97 SS G_CDS: -0.66 Total: 52.31 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.58 -7.50 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414278656.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.290 kcal (2) G-P(sol) polarization free energy of solvation -31.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds