Wall clock time and date at job start Tue Mar 31 2020 03:36:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57524 * 2 1 4 4 O 1.42102 * 108.57745 * 131.02104 * 2 1 3 5 5 C 1.81394 * 101.92538 * 245.51271 * 2 1 3 6 6 C 1.50702 * 115.54760 * 32.81697 * 5 2 1 7 7 O 1.21281 * 119.99779 * 254.74088 * 6 5 2 8 8 N 1.34779 * 119.99973 * 74.74530 * 6 5 2 9 9 C 1.47425 * 125.64845 * 354.28201 * 8 6 5 10 10 C 1.55126 * 104.72295 * 155.81973 * 9 8 6 11 11 C 1.55154 * 101.48719 * 37.29257 * 10 9 8 12 12 O 1.42902 * 110.71806 * 82.69354 * 11 10 9 13 13 C 1.50698 * 110.87696 * 205.89940 * 11 10 9 14 14 H 1.07997 * 120.00095 * 113.61081 * 13 11 10 15 15 C 1.37882 * 119.99888 * 293.61228 * 13 11 10 16 16 N 1.31513 * 119.99777 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99891 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47285 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46945 * 120.00151 * 17 15 13 20 20 H 1.48505 * 109.47203 * 239.99996 * 17 15 13 21 21 C 1.47024 * 125.64641 * 174.59071 * 8 6 5 22 22 C 1.53001 * 117.50208 * 247.11243 * 5 2 1 23 23 C 1.52993 * 117.50058 * 178.48946 * 5 2 1 24 24 H 1.08994 * 109.47130 * 62.68135 * 1 2 3 25 25 H 1.08996 * 109.47268 * 302.66937 * 1 2 3 26 26 H 1.09007 * 109.46869 * 182.67961 * 1 2 3 27 27 H 1.08999 * 110.36409 * 274.75457 * 9 8 6 28 28 H 1.08998 * 110.36458 * 37.07205 * 9 8 6 29 29 H 1.09005 * 111.18705 * 279.19328 * 10 9 8 30 30 H 1.08997 * 110.90523 * 155.27725 * 10 9 8 31 31 H 0.96700 * 113.99458 * 66.48346 * 12 11 10 32 32 H 0.97001 * 119.99629 * 179.97438 * 16 15 13 33 33 H 1.08993 * 109.88163 * 300.43817 * 21 8 6 34 34 H 1.09000 * 109.88261 * 61.45203 * 21 8 6 35 35 H 1.09003 * 117.49389 * 359.97438 * 22 5 2 36 36 H 1.08997 * 117.50077 * 145.01202 * 22 5 2 37 37 H 1.09004 * 117.49813 * 214.98214 * 23 5 2 38 38 H 1.08996 * 117.49967 * 359.97438 * 23 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 1.0163 5 6 2.1888 -0.7356 -1.6152 6 6 1.2051 -0.4265 -2.7142 7 8 0.4215 -1.2755 -3.0831 8 7 1.1962 0.7935 -3.2871 9 6 2.0055 1.9493 -2.8598 10 6 2.1223 2.8383 -4.1257 11 6 0.7154 2.6644 -4.7563 12 8 -0.2262 3.5470 -4.1426 13 6 0.7627 2.8902 -6.2455 14 1 0.5690 2.0712 -6.9222 15 6 1.0533 4.1425 -6.7440 16 7 1.2887 5.1399 -5.9198 17 14 1.1127 4.4222 -8.5900 18 1 0.8128 3.1493 -9.2934 19 1 0.1052 5.4455 -8.9682 20 1 2.4667 4.8944 -8.9758 21 6 0.3730 1.1937 -4.4376 22 6 2.8512 -2.1148 -1.6268 23 6 3.6621 -0.8734 -2.0039 24 1 -0.3633 0.4716 -0.9130 25 1 -0.3633 0.5547 0.8650 26 1 -0.3633 -1.0266 0.0480 27 1 1.5013 2.4900 -2.0588 28 1 2.9928 1.6215 -2.5345 29 1 2.8990 2.4695 -4.7957 30 1 2.3034 3.8785 -3.8551 31 1 -0.0557 4.4836 -4.3123 32 1 1.4935 6.0208 -6.2706 33 1 0.6057 0.5645 -5.2966 34 1 -0.6838 1.1026 -4.1869 35 1 3.0622 -2.5798 -0.6638 36 1 2.5754 -2.7988 -2.4293 37 1 3.9199 -0.7407 -3.0547 38 1 4.4062 -0.5216 -1.2893 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452254707.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:02 Heat of formation + Delta-G solvation = -115.217572 kcal Electronic energy + Delta-G solvation = -24302.883830 eV Core-core repulsion = 20660.283283 eV Total energy + Delta-G solvation = -3642.600548 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.03423 -37.79290 -37.14195 -36.44396 -36.07446 -34.43664 -32.21270 -30.05349 -29.56653 -28.46211 -25.92372 -24.17113 -22.82396 -22.32932 -20.21891 -19.54646 -18.45887 -17.80288 -17.29188 -16.37637 -16.05283 -16.01849 -15.49824 -15.04486 -14.90636 -14.51086 -14.17155 -13.63948 -13.27264 -13.16133 -13.09993 -12.61950 -12.33739 -12.22382 -12.04325 -11.99227 -11.82921 -11.65999 -11.45431 -11.42998 -11.26344 -11.08769 -10.94088 -10.71395 -10.52194 -10.49302 -10.19108 -9.72165 -9.45722 -8.73616 -8.28494 -8.21224 -6.35908 -4.43711 -0.18888 2.32605 2.77931 2.84077 3.14485 3.21398 3.24386 3.28837 3.47421 4.00248 4.20991 4.26406 4.43141 4.50652 4.74552 4.91396 4.94425 5.13263 5.27797 5.50528 5.55928 5.64022 5.68273 5.76044 5.90213 5.99319 6.20896 6.32775 6.53198 6.79693 6.87307 7.23365 7.28196 7.67293 7.83132 7.91480 8.27558 8.58624 9.24940 9.38748 10.72008 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.027301 B = 0.004519 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.367416 B = 6194.651141 C = 6423.273477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.458 3.542 3 O -0.919 6.919 4 O -0.934 6.934 5 C -0.669 4.669 6 C 0.569 3.431 7 O -0.535 6.535 8 N -0.600 5.600 9 C 0.083 3.917 10 C -0.136 4.136 11 C 0.248 3.752 12 O -0.587 6.587 13 C -0.536 4.536 14 H 0.065 0.935 15 C 0.073 3.927 16 N -0.896 5.896 17 Si 0.904 3.096 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.121 3.879 22 C -0.095 4.095 23 C -0.106 4.106 24 H 0.131 0.869 25 H 0.133 0.867 26 H 0.133 0.867 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.388 0.612 32 H 0.270 0.730 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -8.518 9.403 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.799 4.799 2 S 2.637 3.363 3 O -0.916 6.916 4 O -0.932 6.932 5 C -0.759 4.759 6 C 0.353 3.647 7 O -0.413 6.413 8 N -0.332 5.332 9 C -0.039 4.039 10 C -0.174 4.174 11 C 0.207 3.793 12 O -0.398 6.398 13 C -0.574 4.574 14 H 0.083 0.917 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.208 1.208 21 C 0.000 4.000 22 C -0.133 4.133 23 C -0.144 4.144 24 H 0.150 0.850 25 H 0.152 0.848 26 H 0.152 0.848 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.240 0.760 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.137 0.863 38 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.617 -9.099 10.066 14.042 hybrid contribution -0.295 0.667 -1.838 1.977 sum 3.322 -8.432 8.228 12.241 Atomic orbital electron populations 1.30182 1.25398 1.12154 1.12164 1.06815 0.78846 0.75465 0.75209 1.93631 1.79329 1.33086 1.85567 1.93578 1.79914 1.67615 1.52055 1.31880 1.05492 1.17331 1.21176 1.17930 0.83056 0.81769 0.81924 1.90686 1.40453 1.46606 1.63562 1.48699 1.42336 1.09944 1.32202 1.22852 0.94580 0.86699 0.99759 1.23360 1.00948 0.99469 0.93672 1.19444 0.84556 0.84035 0.91234 1.86079 1.54953 1.22033 1.76691 1.21549 1.48879 0.96045 0.90963 0.91652 1.24992 0.93424 0.95718 0.98862 1.69579 1.47594 1.01607 1.34779 0.86340 0.77768 0.78425 0.84312 1.19617 1.20708 1.20781 1.22199 0.94353 0.97149 0.86278 1.22980 0.96936 0.87774 1.05608 1.22923 0.86326 1.00160 1.04963 0.85019 0.84813 0.84819 0.90307 0.91348 0.91393 0.89348 0.75979 0.92029 0.90708 0.91637 0.85683 0.86326 0.86273 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -7.29 10.09 101.05 1.02 -6.27 16 2 S 2.46 31.17 5.57 -107.50 -0.60 30.57 16 3 O -0.92 -13.94 16.11 -57.83 -0.93 -14.87 16 4 O -0.93 -12.90 17.21 -57.83 -0.99 -13.89 16 5 C -0.67 -8.79 1.61 -91.77 -0.15 -8.94 16 6 C 0.57 9.65 5.40 -10.98 -0.06 9.59 16 7 O -0.54 -10.42 17.26 5.56 0.10 -10.32 16 8 N -0.60 -11.12 3.32 -170.38 -0.57 -11.69 16 9 C 0.08 1.51 5.57 -2.41 -0.01 1.50 16 10 C -0.14 -2.86 5.69 -24.47 -0.14 -3.00 16 11 C 0.25 5.76 0.85 -89.94 -0.08 5.69 16 12 O -0.59 -14.36 13.09 -35.23 -0.46 -14.82 16 13 C -0.54 -13.52 8.22 -34.44 -0.28 -13.81 16 14 H 0.07 1.65 7.53 -52.49 -0.40 1.26 16 15 C 0.07 1.81 5.28 -17.82 -0.09 1.72 16 16 N -0.90 -22.47 10.71 55.43 0.59 -21.88 16 17 Si 0.90 19.73 29.54 -169.99 -5.02 14.71 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 C 0.12 2.58 6.22 -3.06 -0.02 2.56 16 22 C -0.09 -0.99 9.69 -26.73 -0.26 -1.25 16 23 C -0.11 -1.12 9.06 -26.74 -0.24 -1.36 16 24 H 0.13 1.70 7.15 -51.93 -0.37 1.32 16 25 H 0.13 1.20 8.14 -51.93 -0.42 0.77 16 26 H 0.13 1.29 8.14 -51.92 -0.42 0.87 16 27 H 0.08 1.45 7.44 -51.93 -0.39 1.07 16 28 H 0.07 1.08 6.66 -51.93 -0.35 0.73 16 29 H 0.07 1.43 8.05 -51.93 -0.42 1.01 16 30 H 0.09 1.95 7.78 -51.93 -0.40 1.55 16 31 H 0.39 9.64 6.98 45.56 0.32 9.96 16 32 H 0.27 6.47 8.31 -40.82 -0.34 6.13 16 33 H 0.07 1.60 7.63 -51.93 -0.40 1.20 16 34 H 0.07 1.43 8.07 -51.93 -0.42 1.01 16 35 H 0.13 1.08 7.54 -51.93 -0.39 0.69 16 36 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.12 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 325.65 15.07 4.91 4.91 Total: -1.00 -30.33 325.65 -7.75 -38.08 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -4.46 Total: 12.78 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.31 Total: -13.57 kcal Atomic # 7 Polarization: -33.60 SS G_CDS: 0.03 Total: -33.57 kcal Atomic # 8 Polarization: -51.62 SS G_CDS: -2.29 Total: -53.91 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Atomic # 16 Polarization: 31.17 SS G_CDS: -0.60 Total: 30.57 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.33 -7.75 -38.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452254707.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.136 kcal (2) G-P(sol) polarization free energy of solvation -30.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds