Wall clock time and date at job start Tue Mar 31 2020 03:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42102 * 108.57629 * 2 1 4 4 O 1.42097 * 108.58411 * 228.97624 * 2 1 3 5 5 C 1.81398 * 101.92005 * 114.48480 * 2 1 3 6 6 C 1.50701 * 115.55393 * 305.73860 * 5 2 1 7 7 O 1.21273 * 120.00109 * 93.99458 * 6 5 2 8 8 N 1.34779 * 119.99771 * 273.99896 * 6 5 2 9 9 C 1.47017 * 125.65152 * 3.41834 * 8 6 5 10 10 C 1.54323 * 107.27085 * 178.98487 * 9 8 6 11 11 C 1.55154 * 102.94344 * 337.80731 * 10 9 8 12 12 O 1.42904 * 111.00286 * 277.42373 * 11 10 9 13 13 C 1.50700 * 111.00422 * 153.61681 * 11 10 9 14 14 H 1.08002 * 119.99833 * 2.14451 * 13 11 10 15 15 C 1.37874 * 119.99788 * 182.14363 * 13 11 10 16 16 N 1.31513 * 119.99913 * 186.70932 * 15 13 11 17 17 Si 1.86804 * 120.00257 * 6.71721 * 15 13 11 18 18 H 1.48497 * 109.47499 * 92.73386 * 17 15 13 19 19 H 1.48501 * 109.46917 * 212.73837 * 17 15 13 20 20 H 1.48503 * 109.46903 * 332.73186 * 17 15 13 21 21 C 1.47427 * 125.64471 * 183.46625 * 8 6 5 22 22 C 1.52999 * 117.51748 * 91.44156 * 5 2 1 23 23 C 1.52999 * 60.00092 * 107.47771 * 22 5 2 24 24 H 1.09001 * 109.47507 * 310.71913 * 1 2 3 25 25 H 1.09003 * 109.46928 * 70.71987 * 1 2 3 26 26 H 1.09002 * 109.46841 * 190.71378 * 1 2 3 27 27 H 1.08999 * 109.88380 * 59.56537 * 9 8 6 28 28 H 1.09004 * 109.88245 * 298.40457 * 9 8 6 29 29 H 1.09003 * 110.72192 * 219.43943 * 10 9 8 30 30 H 1.09000 * 110.87434 * 96.24486 * 10 9 8 31 31 H 0.96695 * 114.00286 * 298.54974 * 12 11 10 32 32 H 0.97004 * 119.99908 * 180.02562 * 16 15 13 33 33 H 1.09001 * 110.36322 * 85.24779 * 21 8 6 34 34 H 1.09000 * 110.36844 * 322.92679 * 21 8 6 35 35 H 1.09003 * 117.49830 * 214.97013 * 22 5 2 36 36 H 1.09004 * 117.50073 * 359.97438 * 22 5 2 37 37 H 1.08996 * 117.50349 * 252.50643 * 23 22 5 38 38 H 1.09001 * 117.49453 * 107.49288 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0161 5 6 2.1886 -0.7356 1.6153 6 6 1.5459 -0.0629 2.8008 7 8 0.4869 -0.4704 3.2287 8 7 2.1480 0.9918 3.3853 9 6 3.3910 1.6304 2.9285 10 6 3.6810 2.8054 3.8860 11 6 2.2859 3.1132 4.4911 12 8 1.5205 3.9448 3.6165 13 6 2.4152 3.7427 5.8542 14 1 3.3932 3.9513 6.2621 15 6 1.2849 4.0523 6.5805 16 7 1.3907 4.7197 7.7088 17 14 -0.3967 3.5236 5.9622 18 1 -0.7501 2.2078 6.5529 19 1 -1.4103 4.5332 6.3603 20 1 -0.3664 3.4097 4.4819 21 6 1.6698 1.6954 4.5894 22 6 2.3680 -2.2538 1.6761 23 6 3.5829 -1.3339 1.8127 24 1 -0.3634 0.6704 0.7789 25 1 -0.3633 0.3393 -0.9701 26 1 -0.3633 -1.0098 0.1911 27 1 3.2644 2.0030 1.9121 28 1 4.2108 0.9129 2.9631 29 1 4.0614 3.6663 3.3360 30 1 4.3822 2.5073 4.6655 31 1 1.9191 4.8093 3.4469 32 1 0.5955 4.9373 8.2200 33 1 2.0220 1.1903 5.4888 34 1 0.5814 1.7537 4.5875 35 1 2.0211 -2.7660 2.5736 36 1 2.2605 -2.8111 0.7454 37 1 4.2749 -1.2858 0.9719 38 1 4.0353 -1.2410 2.8000 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001452254747.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:36:06 Heat of formation + Delta-G solvation = -101.588073 kcal Electronic energy + Delta-G solvation = -24514.760612 eV Core-core repulsion = 20872.751084 eV Total energy + Delta-G solvation = -3642.009528 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.13384 -37.99542 -37.29915 -36.44995 -36.17325 -34.56569 -32.45453 -30.35047 -29.69230 -28.70547 -26.00738 -24.12662 -22.94219 -22.58773 -20.17803 -19.83112 -18.59433 -17.90603 -17.35577 -16.55164 -16.19404 -16.12400 -15.54166 -15.03900 -14.95758 -14.49268 -14.35142 -13.78904 -13.36209 -13.30756 -13.19007 -12.83141 -12.66804 -12.39849 -12.25902 -12.20890 -11.96594 -11.94073 -11.72485 -11.45762 -11.41949 -11.12406 -10.83755 -10.71471 -10.61125 -10.35663 -10.11948 -9.78601 -9.05002 -8.75763 -8.49439 -8.22889 -6.27688 -4.40090 -0.24925 2.27432 2.66637 2.83477 3.11742 3.31317 3.41941 3.46435 3.61544 3.89781 4.20934 4.34181 4.38926 4.40639 4.69393 4.89115 4.99520 5.04983 5.14960 5.16243 5.25241 5.42750 5.57876 5.60569 5.65614 5.75377 6.03470 6.10641 6.36160 6.50438 6.54012 6.63719 7.00217 7.42380 7.76899 8.13922 8.22918 8.68421 8.89149 9.36253 10.82215 Molecular weight = 303.10amu Principal moments of inertia in cm(-1) A = 0.024044 B = 0.005345 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.268838 B = 5236.815807 C = 5338.266344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.644 4.644 2 S 2.458 3.542 3 O -0.919 6.919 4 O -0.934 6.934 5 C -0.669 4.669 6 C 0.570 3.430 7 O -0.535 6.535 8 N -0.592 5.592 9 C 0.085 3.915 10 C -0.145 4.145 11 C 0.217 3.783 12 O -0.568 6.568 13 C -0.551 4.551 14 H 0.082 0.918 15 C 0.092 3.908 16 N -0.883 5.883 17 Si 0.861 3.139 18 H -0.284 1.284 19 H -0.293 1.293 20 H -0.222 1.222 21 C 0.107 3.893 22 C -0.096 4.096 23 C -0.109 4.109 24 H 0.134 0.866 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.366 0.634 32 H 0.268 0.732 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.210 -11.298 -14.030 18.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.636 3.364 3 O -0.916 6.916 4 O -0.931 6.931 5 C -0.758 4.758 6 C 0.354 3.646 7 O -0.413 6.413 8 N -0.324 5.324 9 C -0.037 4.037 10 C -0.183 4.183 11 C 0.176 3.824 12 O -0.375 6.375 13 C -0.588 4.588 14 H 0.100 0.900 15 C -0.114 4.114 16 N -0.519 5.519 17 Si 0.688 3.312 18 H -0.210 1.210 19 H -0.220 1.220 20 H -0.145 1.145 21 C -0.014 4.014 22 C -0.134 4.134 23 C -0.147 4.147 24 H 0.152 0.848 25 H 0.149 0.851 26 H 0.152 0.848 27 H 0.107 0.893 28 H 0.079 0.921 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.213 0.787 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.735 -11.711 -14.304 18.687 hybrid contribution -1.105 0.074 0.661 1.289 sum 1.630 -11.636 -13.643 18.005 Atomic orbital electron populations 1.30121 1.25169 1.12444 1.11792 1.06850 0.78995 0.75471 0.75044 1.93612 1.79335 1.33190 1.85431 1.93583 1.80034 1.67706 1.51810 1.31926 1.13361 1.09984 1.20548 1.17927 0.84256 0.79918 0.82464 1.90704 1.21772 1.64517 1.64277 1.48588 1.25589 1.29403 1.28817 1.22404 0.85274 0.95471 1.00583 1.23193 1.00389 0.96656 0.98084 1.20077 0.85686 0.86875 0.89749 1.86532 1.51518 1.30049 1.69352 1.21179 0.95364 1.42688 0.99589 0.90034 1.24959 0.99630 0.92790 0.94068 1.69928 1.30378 1.36829 1.14732 0.87260 0.83221 0.77950 0.82729 1.21034 1.22039 1.14523 1.23120 1.00436 0.92340 0.85459 1.22948 0.98971 0.85452 1.06033 1.22971 0.87333 0.98654 1.05720 0.84764 0.85060 0.84850 0.89331 0.92133 0.90438 0.90213 0.78730 0.92268 0.89688 0.90645 0.86422 0.85848 0.86412 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -6.81 10.28 101.05 1.04 -5.78 16 2 S 2.46 30.25 5.43 -107.50 -0.58 29.67 16 3 O -0.92 -14.13 16.19 -57.83 -0.94 -15.07 16 4 O -0.93 -12.20 17.52 -57.83 -1.01 -13.22 16 5 C -0.67 -8.41 1.71 -91.77 -0.16 -8.57 16 6 C 0.57 9.80 6.58 -10.98 -0.07 9.73 16 7 O -0.53 -10.71 17.30 5.56 0.10 -10.61 16 8 N -0.59 -10.97 3.33 -170.53 -0.57 -11.54 16 9 C 0.09 1.37 6.22 -3.07 -0.02 1.35 16 10 C -0.14 -2.56 6.12 -24.90 -0.15 -2.72 16 11 C 0.22 4.74 0.69 -89.63 -0.06 4.68 16 12 O -0.57 -12.43 10.38 -35.23 -0.37 -12.80 16 13 C -0.55 -14.26 8.86 -34.44 -0.31 -14.56 16 14 H 0.08 2.25 8.02 -52.49 -0.42 1.83 16 15 C 0.09 2.52 5.46 -17.82 -0.10 2.42 16 16 N -0.88 -25.81 13.96 55.43 0.77 -25.03 16 17 Si 0.86 21.56 24.40 -169.99 -4.15 17.41 16 18 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 19 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 20 H -0.22 -5.52 4.96 56.52 0.28 -5.24 16 21 C 0.11 2.34 4.92 -2.53 -0.01 2.33 16 22 C -0.10 -0.90 9.79 -26.73 -0.26 -1.17 16 23 C -0.11 -1.04 8.74 -26.73 -0.23 -1.27 16 24 H 0.13 1.64 8.08 -51.92 -0.42 1.22 16 25 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 26 H 0.13 1.16 8.14 -51.92 -0.42 0.74 16 27 H 0.09 1.44 6.14 -51.93 -0.32 1.12 16 28 H 0.06 0.79 6.71 -51.93 -0.35 0.44 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.37 8.02 -51.93 -0.42 0.95 16 31 H 0.37 6.82 9.11 45.56 0.41 7.23 16 32 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.09 1.85 8.03 -51.93 -0.42 1.43 16 34 H 0.08 1.80 4.66 -51.93 -0.24 1.56 16 35 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.12 0.90 7.82 -51.93 -0.41 0.49 16 37 H 0.12 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.12 1.09 7.60 -51.93 -0.39 0.70 16 LS Contribution 320.26 15.07 4.83 4.83 Total: -1.00 -34.90 320.26 -6.59 -41.49 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.34 Total: 8.41 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -0.33 Total: -13.54 kcal Atomic # 7 Polarization: -36.78 SS G_CDS: 0.21 Total: -36.57 kcal Atomic # 8 Polarization: -49.47 SS G_CDS: -2.22 Total: -51.69 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.15 Total: 17.41 kcal Atomic # 16 Polarization: 30.25 SS G_CDS: -0.58 Total: 29.67 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.90 -6.59 -41.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001452254747.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.098 kcal (2) G-P(sol) polarization free energy of solvation -34.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds