Wall clock time and date at job start Tue Mar 31 2020 04:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65604 * 119.99872 * 2 1 4 4 O 1.42099 * 104.27427 * 308.92994 * 3 2 1 5 5 O 1.42092 * 104.27705 * 181.06754 * 3 2 1 6 6 C 1.81402 * 104.44551 * 64.99700 * 3 2 1 7 7 C 1.50709 * 109.46608 * 180.02562 * 6 3 2 8 8 O 1.21278 * 120.00397 * 359.97438 * 7 6 3 9 9 N 1.34777 * 119.99791 * 180.02562 * 7 6 3 10 10 C 1.47874 * 126.94503 * 0.02562 * 9 7 6 11 11 C 1.56014 * 105.19097 * 182.05586 * 10 9 7 12 12 H 1.08998 * 116.25107 * 158.78411 * 11 10 9 13 13 C 1.57082 * 99.60807 * 32.75371 * 11 10 9 14 14 C 1.49607 * 127.09453 * 178.43450 * 9 7 6 15 15 H 1.09001 * 116.51767 * 16.89231 * 14 9 7 16 16 C 1.56018 * 104.88605 * 246.79588 * 14 9 7 17 17 N 1.47874 * 105.10081 * 289.08809 * 16 14 9 18 18 C 1.36936 * 126.94052 * 182.00404 * 17 16 14 19 19 H 1.08005 * 119.99854 * 180.02562 * 18 17 16 20 20 C 1.38814 * 120.00013 * 359.97438 * 18 17 16 21 21 N 1.31613 * 120.00046 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47261 * 0.02562 * 22 20 18 24 24 H 1.48502 * 109.47365 * 119.99808 * 22 20 18 25 25 H 1.48500 * 109.47365 * 239.99767 * 22 20 18 26 26 H 1.09004 * 109.46815 * 179.97438 * 1 2 3 27 27 H 1.08992 * 109.47740 * 300.00060 * 1 2 3 28 28 H 1.09001 * 109.46851 * 60.00682 * 1 2 3 29 29 H 0.96999 * 119.99941 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47622 * 60.00177 * 6 3 2 31 31 H 1.08997 * 109.47372 * 299.99431 * 6 3 2 32 32 H 1.09002 * 110.31604 * 63.09759 * 10 9 7 33 33 H 1.09004 * 110.31557 * 301.01296 * 10 9 7 34 34 H 1.09007 * 112.36824 * 64.27640 * 13 11 10 35 35 H 1.09001 * 112.36928 * 191.70963 * 13 11 10 36 36 H 1.08996 * 110.31380 * 170.18728 * 16 14 9 37 37 H 1.08997 * 110.31457 * 47.99196 * 16 14 9 38 38 H 0.97009 * 119.99829 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1703 -1.0713 5 8 3.6606 1.0493 -0.0257 6 6 1.8762 2.1973 1.5920 7 6 2.5781 3.5257 1.7113 8 8 3.2897 3.9186 0.8112 9 7 2.4157 4.2765 2.8187 10 6 1.5914 3.9488 4.0018 11 6 1.7251 5.1823 4.9477 12 1 0.9377 5.3075 5.6908 13 6 1.8644 6.3213 3.8750 14 6 3.0571 5.5948 3.1170 15 1 3.4913 6.1273 2.2709 16 6 4.0115 5.3134 4.3187 17 7 3.1184 5.0865 5.4752 18 6 3.4935 4.8386 6.7686 19 1 2.7419 4.6881 7.5295 20 6 4.8399 4.7795 7.1015 21 7 5.7557 4.9614 6.1740 22 14 5.3516 4.4406 8.8658 23 1 4.1407 4.2723 9.7089 24 1 6.1652 3.1993 8.9155 25 1 6.1558 5.5802 9.3756 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.9500 -0.8400 0.0004 30 1 2.1956 1.5431 2.4033 31 1 0.7986 2.3497 1.6509 32 1 1.9724 3.0529 4.4921 33 1 0.5508 3.8064 3.7103 34 1 0.9675 6.4284 3.2648 35 1 2.1754 7.2691 4.3143 36 1 4.6548 6.1743 4.5006 37 1 4.6125 4.4251 4.1246 38 1 6.6966 4.9205 6.4068 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001494683559.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:44 Heat of formation + Delta-G solvation = -38.632895 kcal Electronic energy + Delta-G solvation = -23680.182592 eV Core-core repulsion = 20073.195756 eV Total energy + Delta-G solvation = -3606.986836 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -40.19064 -38.14261 -37.10688 -35.94200 -35.23219 -33.79949 -31.96315 -30.28406 -28.86118 -28.50420 -26.26471 -25.32851 -23.66368 -21.17541 -20.03268 -19.58994 -18.58623 -18.08618 -17.22220 -16.85805 -16.43225 -16.20983 -15.91553 -15.25644 -14.89995 -14.53258 -14.13090 -13.95599 -13.63416 -13.39589 -13.07543 -12.61609 -12.33104 -12.05827 -12.02941 -11.98116 -11.78600 -11.77321 -11.43284 -11.27528 -11.07771 -10.94040 -10.86180 -10.65710 -10.37554 -10.14590 -10.04033 -9.83369 -9.72915 -8.80039 -8.24831 -7.03105 -5.84885 -3.20358 0.09487 2.61173 2.65797 3.08250 3.32223 3.36923 3.40699 3.77718 4.12137 4.30633 4.34492 4.69371 4.78111 4.90683 5.01673 5.05339 5.14478 5.23082 5.40119 5.45839 5.46419 5.52175 5.64975 5.76666 6.01325 6.09925 6.28680 6.31740 6.46435 6.52642 6.66285 7.32466 7.36349 7.62987 7.79887 8.00888 8.14255 9.01516 9.62625 10.30537 11.27396 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.022322 B = 0.004012 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.084990 B = 6977.516387 C = 7261.310960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -1.128 6.128 3 S 2.649 3.351 4 O -0.942 6.942 5 O -0.941 6.941 6 C -0.666 4.666 7 C 0.555 3.445 8 O -0.551 6.551 9 N -0.593 5.593 10 C 0.079 3.921 11 C 0.141 3.859 12 H 0.108 0.892 13 C -0.152 4.152 14 C 0.097 3.903 15 H 0.118 0.882 16 C 0.172 3.828 17 N -0.597 5.597 18 C -0.236 4.236 19 H 0.082 0.918 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.418 0.582 30 H 0.158 0.842 31 H 0.153 0.847 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.050 0.950 38 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.029 -7.538 -7.715 17.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.888 5.888 3 S 2.736 3.264 4 O -0.931 6.931 5 O -0.931 6.931 6 C -0.794 4.794 7 C 0.341 3.659 8 O -0.432 6.432 9 N -0.325 5.325 10 C -0.046 4.046 11 C 0.032 3.968 12 H 0.126 0.874 13 C -0.192 4.192 14 C -0.005 4.005 15 H 0.136 0.864 16 C 0.047 3.953 17 N -0.321 5.321 18 C -0.363 4.363 19 H 0.100 0.900 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.088 0.912 29 H 0.252 0.748 30 H 0.176 0.824 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.104 0.896 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -12.991 -6.917 -8.739 17.117 hybrid contribution 0.103 -0.816 1.784 1.964 sum -12.889 -7.732 -6.956 16.562 Atomic orbital electron populations 1.21519 0.78919 1.04276 1.01969 1.55629 1.16014 1.25015 1.92119 1.04089 0.73561 0.73078 0.75711 1.93573 1.79019 1.72147 1.48401 1.93603 1.32131 1.81014 1.86360 1.31027 1.12153 1.07929 1.28252 1.18586 0.81391 0.83657 0.82296 1.90818 1.40566 1.72646 1.39158 1.49161 1.46171 1.21250 1.15942 1.23443 0.92893 1.01912 0.86386 1.23143 0.90317 0.90828 0.92507 0.87438 1.24477 0.97309 0.99100 0.98299 1.24906 0.95504 0.81901 0.98150 0.86373 1.21953 0.90077 1.00992 0.82287 1.45253 0.98510 1.83254 1.05107 1.19084 0.91440 1.42569 0.83251 0.90014 1.24840 0.95692 1.01646 0.97954 1.69914 1.00046 1.55165 1.31286 0.86031 0.78319 0.77562 0.83677 1.20448 1.21724 1.21637 0.89912 0.92298 0.91219 0.74772 0.82360 0.82881 0.90773 0.92475 0.91224 0.89591 0.92096 0.93183 0.93453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.03 59.85 0.66 1.12 16 2 N -1.13 -9.47 6.08 -16.63 -0.10 -9.57 16 3 S 2.65 35.85 4.60 -107.50 -0.49 35.35 16 4 O -0.94 -15.60 17.73 -57.55 -1.02 -16.62 16 5 O -0.94 -16.53 18.08 -57.55 -1.04 -17.57 16 6 C -0.67 -8.17 5.79 36.01 0.21 -7.96 16 7 C 0.56 9.99 7.92 -10.98 -0.09 9.90 16 8 O -0.55 -11.88 16.24 5.56 0.09 -11.79 16 9 N -0.59 -10.60 2.98 -155.39 -0.46 -11.06 16 10 C 0.08 1.24 5.98 -1.68 -0.01 1.23 16 11 C 0.14 2.46 5.47 -62.56 -0.34 2.11 16 12 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 13 C -0.15 -2.44 6.94 -21.24 -0.15 -2.59 16 14 C 0.10 1.85 5.27 -61.31 -0.32 1.52 16 15 H 0.12 2.18 8.08 -51.93 -0.42 1.76 16 16 C 0.17 4.03 4.81 -1.67 -0.01 4.02 16 17 N -0.60 -13.82 3.02 -156.35 -0.47 -14.30 16 18 C -0.24 -6.06 10.37 -15.06 -0.16 -6.22 16 19 H 0.08 2.00 7.83 -52.48 -0.41 1.59 16 20 C 0.00 -0.11 5.49 -17.43 -0.10 -0.21 16 21 N -0.92 -26.29 10.56 55.49 0.59 -25.70 16 22 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.24 7.73 -51.93 -0.40 -0.16 16 28 H 0.07 0.44 8.04 -51.93 -0.42 0.03 16 29 H 0.42 2.79 8.92 -34.47 -0.31 2.48 16 30 H 0.16 1.62 8.14 -51.93 -0.42 1.19 16 31 H 0.15 1.27 7.77 -51.93 -0.40 0.86 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.06 1.57 7.46 -51.93 -0.39 1.18 16 37 H 0.05 1.36 7.68 -51.93 -0.40 0.96 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 328.06 15.07 4.94 4.94 Total: -1.00 -36.96 328.06 -8.54 -45.49 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -5.24 Total: 1.69 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.30 Total: 2.94 kcal Atomic # 7 Polarization: -60.19 SS G_CDS: -0.45 Total: -60.64 kcal Atomic # 8 Polarization: -44.00 SS G_CDS: -1.97 Total: -45.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: 35.85 SS G_CDS: -0.49 Total: 35.35 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -36.96 -8.54 -45.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001494683559.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.861 kcal (2) G-P(sol) polarization free energy of solvation -36.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds