Wall clock time and date at job start Tue Mar 31 2020 03:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99725 * 2 1 4 4 H 1.48501 * 109.47068 * 94.66517 * 3 2 1 5 5 H 1.48502 * 109.46700 * 214.65997 * 3 2 1 6 6 H 1.48500 * 109.47330 * 334.66060 * 3 2 1 7 7 C 1.40047 * 119.99782 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99921 * 8.74211 * 7 2 1 9 9 C 1.46379 * 119.99657 * 188.75283 * 7 2 1 10 10 O 1.21690 * 120.00064 * 14.55131 * 9 7 2 11 11 N 1.34777 * 119.99727 * 194.55855 * 9 7 2 12 12 C 1.46960 * 120.59262 * 354.79607 * 11 9 7 13 13 C 1.53815 * 108.40011 * 124.75907 * 12 11 9 14 14 N 1.46962 * 108.57518 * 49.63444 * 13 12 11 15 15 S 1.65609 * 120.59154 * 124.67129 * 14 13 12 16 16 O 1.42094 * 104.27704 * 26.04874 * 15 14 13 17 17 O 1.42105 * 104.27647 * 153.90572 * 15 14 13 18 18 C 1.81394 * 104.44899 * 269.97609 * 15 14 13 19 19 C 1.53937 * 113.73727 * 281.73113 * 18 15 14 20 20 N 1.47965 * 86.18135 * 221.92313 * 19 18 15 21 21 C 1.47961 * 90.76377 * 24.68594 * 20 19 18 22 22 C 1.46966 * 118.81620 * 304.64948 * 14 13 12 23 23 C 1.46962 * 120.59158 * 175.07792 * 11 9 7 24 24 H 0.97005 * 120.00410 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.61057 * 244.54074 * 12 11 9 26 26 H 1.09003 * 109.61474 * 5.05728 * 12 11 9 27 27 H 1.09007 * 109.74152 * 289.85056 * 13 12 11 28 28 H 1.08997 * 109.53805 * 169.30482 * 13 12 11 29 29 H 1.08999 * 112.93947 * 53.43364 * 18 15 14 30 30 H 1.09007 * 113.75784 * 336.23566 * 19 18 15 31 31 H 1.08993 * 113.76291 * 107.60310 * 19 18 15 32 32 H 1.00906 * 110.99265 * 271.79441 * 20 19 18 33 33 H 1.08999 * 113.75932 * 221.00089 * 21 20 19 34 34 H 1.08995 * 113.76074 * 89.62766 * 21 20 19 35 35 H 1.09000 * 109.61092 * 295.48152 * 22 14 13 36 36 H 1.08997 * 109.75186 * 175.05350 * 22 14 13 37 37 H 1.08998 * 109.61403 * 354.94412 * 23 11 9 38 38 H 1.08999 * 109.61021 * 115.46148 * 23 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.5867 1.9895 1.3954 5 1 3.4855 1.4706 -0.7963 6 1 1.3923 2.6791 -0.5992 7 6 2.0069 -1.2129 0.0005 8 1 1.4763 -2.1428 -0.1412 9 6 3.4579 -1.2201 0.1935 10 8 4.0210 -0.2261 0.6125 11 7 4.1702 -2.3278 -0.0932 12 6 3.4935 -3.5701 -0.4911 13 6 4.0668 -4.0234 -1.8445 14 7 5.5339 -4.0121 -1.7588 15 16 6.4092 -5.3732 -2.1109 16 8 5.5788 -6.1025 -3.0040 17 8 7.6748 -4.8782 -2.5263 18 6 6.5545 -6.2409 -0.5246 19 6 7.6227 -5.6466 0.4111 20 7 7.9924 -7.0465 0.7160 21 6 7.4455 -7.4949 -0.5836 22 6 6.2104 -2.7713 -1.3554 23 6 5.6373 -2.3165 -0.0075 24 1 -0.4851 0.8401 -0.0004 25 1 3.6702 -4.3398 0.2603 26 1 2.4230 -3.3888 -0.5879 27 1 3.7410 -3.3409 -2.6295 28 1 3.7211 -5.0328 -2.0672 29 1 5.5915 -6.4092 -0.0427 30 1 8.4021 -5.0901 -0.1095 31 1 7.2091 -5.1062 1.2626 32 1 7.4439 -7.4065 1.4827 33 1 6.8902 -8.4311 -0.5269 34 1 8.1728 -7.4789 -1.3952 35 1 6.0373 -1.9997 -2.1056 36 1 7.2809 -2.9510 -1.2559 37 1 5.9831 -1.3071 0.2152 38 1 5.9632 -2.9990 0.7775 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580044969.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:39 Heat of formation + Delta-G solvation = -55.279806 kcal Electronic energy + Delta-G solvation = -24045.311014 eV Core-core repulsion = 20437.602314 eV Total energy + Delta-G solvation = -3607.708700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.74454 -38.97424 -37.29343 -36.66575 -36.07564 -33.12220 -32.93878 -31.17654 -28.11380 -27.38344 -26.62646 -25.93564 -23.52087 -21.95553 -21.18413 -19.72776 -18.74032 -17.89782 -17.26788 -17.05090 -16.53393 -16.09850 -15.88391 -14.99697 -14.61502 -14.55608 -14.31633 -14.11736 -13.90757 -13.59315 -13.30299 -13.13535 -12.74314 -12.57283 -12.40598 -12.25552 -12.23207 -12.04826 -11.83303 -11.68179 -11.25738 -11.19152 -11.00848 -10.87651 -10.62200 -10.46578 -9.64473 -9.30117 -9.10427 -8.90435 -8.02402 -7.63126 -6.70743 -4.93776 0.07079 2.40929 3.28853 3.33891 3.38975 3.43470 3.66060 3.72662 4.02942 4.13051 4.14522 4.34792 4.47333 4.62911 4.73507 4.93847 5.00972 5.09935 5.16351 5.27363 5.33775 5.39633 5.48336 5.50419 5.54635 5.71809 5.95418 5.98067 6.13396 6.13565 6.35537 6.59309 6.72984 6.94300 7.48312 7.75596 8.18824 8.60287 9.01472 9.91131 10.29690 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.027796 B = 0.004303 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.082910 B = 6505.188956 C = 6672.824686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.103 3.897 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.265 1.265 6 H -0.321 1.321 7 C -0.534 4.534 8 H 0.091 0.909 9 C 0.553 3.447 10 O -0.614 6.614 11 N -0.630 5.630 12 C 0.106 3.894 13 C 0.105 3.895 14 N -0.992 5.992 15 S 2.610 3.390 16 O -0.955 6.955 17 O -0.950 6.950 18 C -0.682 4.682 19 C 0.054 3.946 20 N -0.643 5.643 21 C 0.052 3.948 22 C 0.108 3.892 23 C 0.105 3.895 24 H 0.283 0.717 25 H 0.048 0.952 26 H 0.112 0.888 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.154 0.846 30 H 0.116 0.884 31 H 0.093 0.907 32 H 0.344 0.656 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.035 -13.619 -0.932 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.116 4.116 3 Si 0.799 3.201 4 H -0.204 1.204 5 H -0.190 1.190 6 H -0.252 1.252 7 C -0.570 4.570 8 H 0.109 0.891 9 C 0.363 3.637 10 O -0.506 6.506 11 N -0.364 5.364 12 C -0.020 4.020 13 C -0.021 4.021 14 N -0.831 5.831 15 S 2.703 3.297 16 O -0.945 6.945 17 O -0.941 6.941 18 C -0.792 4.792 19 C -0.077 4.077 20 N -0.271 5.271 21 C -0.080 4.080 22 C -0.018 4.018 23 C -0.021 4.021 24 H 0.093 0.907 25 H 0.066 0.934 26 H 0.130 0.870 27 H 0.100 0.900 28 H 0.110 0.890 29 H 0.172 0.828 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.159 0.841 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.096 0.904 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.297 -13.383 -1.603 18.245 hybrid contribution -1.183 0.540 0.739 1.496 sum 11.114 -12.843 -0.865 17.006 Atomic orbital electron populations 1.69550 1.07956 1.30132 1.37902 1.25756 0.94727 1.02052 0.89047 0.85236 0.77798 0.77437 0.79662 1.20439 1.18985 1.25222 1.20756 0.88979 0.95786 1.51460 0.89092 1.18358 0.88322 0.80207 0.76770 1.90217 1.72631 1.33777 1.53981 1.47586 1.04177 1.11869 1.72818 1.22001 0.99856 0.86707 0.93402 1.22051 0.77715 1.02746 0.99614 1.57551 1.16195 1.24630 1.84707 1.05151 0.73891 0.74027 0.76678 1.93580 1.67759 1.73017 1.60156 1.93591 1.42695 1.78140 1.79629 1.33672 1.08979 1.11548 1.24959 1.23367 0.93498 0.93117 0.97721 1.65038 1.54569 1.03790 1.03694 1.23284 0.94317 0.94714 0.95691 1.21906 0.96073 0.85947 0.97922 1.21623 0.83182 1.02686 0.94599 0.90694 0.93365 0.86998 0.89999 0.89031 0.82784 0.86615 0.88862 0.84065 0.88850 0.87618 0.90446 0.88980 0.88367 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.60 13.92 55.55 0.77 -21.82 16 2 C 0.10 2.80 5.52 -17.37 -0.10 2.71 16 3 Si 0.97 24.66 25.88 -169.99 -4.40 20.26 16 4 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 5 H -0.26 -7.05 6.64 56.52 0.38 -6.67 16 6 H -0.32 -7.80 7.11 56.52 0.40 -7.40 16 7 C -0.53 -14.15 9.35 -35.63 -0.33 -14.48 16 8 H 0.09 2.35 5.98 -52.49 -0.31 2.04 16 9 C 0.55 13.77 7.29 -12.98 -0.09 13.67 16 10 O -0.61 -16.83 11.83 5.20 0.06 -16.77 16 11 N -0.63 -12.22 2.94 -173.88 -0.51 -12.73 16 12 C 0.11 1.67 6.54 -3.37 -0.02 1.64 16 13 C 0.10 1.44 6.50 -3.37 -0.02 1.42 16 14 N -0.99 -12.96 3.20 -113.00 -0.36 -13.32 16 15 S 2.61 31.40 5.36 -107.50 -0.58 30.82 16 16 O -0.96 -14.08 16.70 -57.54 -0.96 -15.04 16 17 O -0.95 -13.53 16.01 -57.54 -0.92 -14.45 16 18 C -0.68 -5.81 4.68 -25.79 -0.12 -5.93 16 19 C 0.05 0.45 8.47 -2.76 -0.02 0.43 16 20 N -0.64 -5.34 8.56 -117.16 -1.00 -6.34 16 21 C 0.05 0.41 8.50 -2.76 -0.02 0.38 16 22 C 0.11 1.46 6.48 -3.60 -0.02 1.44 16 23 C 0.10 1.65 6.58 -3.60 -0.02 1.63 16 24 H 0.28 7.15 8.29 -40.82 -0.34 6.81 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.11 1.93 5.33 -51.93 -0.28 1.65 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 28 H 0.09 1.07 7.06 -51.93 -0.37 0.70 16 29 H 0.15 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.12 1.02 7.52 -51.92 -0.39 0.63 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.34 2.26 8.89 -39.29 -0.35 1.91 16 33 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.11 0.82 8.10 -51.93 -0.42 0.40 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.09 1.04 7.07 -51.93 -0.37 0.67 16 37 H 0.10 1.73 7.02 -51.93 -0.36 1.37 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -34.62 317.39 -8.86 -43.48 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -4.97 Total: -1.78 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: -0.78 Total: 2.92 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -1.10 Total: -54.22 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -1.82 Total: -46.26 kcal Atomic # 14 Polarization: 24.66 SS G_CDS: -4.40 Total: 20.26 kcal Atomic # 16 Polarization: 31.40 SS G_CDS: -0.58 Total: 30.82 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.62 -8.86 -43.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580044969.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.800 kcal (2) G-P(sol) polarization free energy of solvation -34.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds