Wall clock time and date at job start Tue Mar 31 2020 03:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47249 * 344.74043 * 3 2 1 5 5 C 1.37100 * 120.00034 * 263.95257 * 4 3 2 6 6 H 1.07994 * 119.99428 * 200.21905 * 5 4 3 7 7 C 1.38946 * 119.99853 * 20.21553 * 5 4 3 8 8 N 1.31408 * 120.00158 * 21.42785 * 7 5 4 9 9 Si 1.86801 * 119.99662 * 201.42618 * 7 5 4 10 10 H 1.48502 * 109.46923 * 90.00359 * 9 7 5 11 11 H 1.48505 * 109.46862 * 210.00246 * 9 7 5 12 12 H 1.48504 * 109.47181 * 330.00340 * 9 7 5 13 13 C 1.34780 * 119.99625 * 83.95103 * 4 3 2 14 14 O 1.21293 * 119.99655 * 180.02562 * 13 4 3 15 15 C 1.50695 * 120.00117 * 0.27625 * 13 4 3 16 16 N 1.46506 * 109.47241 * 179.72641 * 15 13 4 17 17 C 1.34515 * 126.74631 * 124.70562 * 16 15 13 18 18 N 1.30682 * 108.28650 * 179.89567 * 17 16 15 19 19 C 1.33958 * 109.78210 * 0.38221 * 18 17 16 20 20 C 1.48481 * 125.64957 * 179.72641 * 19 18 17 21 21 N 1.34038 * 126.67394 * 180.02562 * 20 19 18 22 22 N 1.28984 * 107.27104 * 179.97438 * 21 20 19 23 23 N 1.28732 * 108.93937 * 0.02562 * 22 21 20 24 24 H 0.97005 * 125.34364 * 179.97438 * 23 22 21 25 25 N 1.28870 * 109.31528 * 359.75731 * 23 22 21 26 26 N 1.31465 * 108.70586 * 359.76581 * 19 18 17 27 27 H 1.08999 * 109.47234 * 224.74008 * 3 2 1 28 28 H 1.09003 * 109.47142 * 104.74274 * 3 2 1 29 29 H 0.97003 * 120.00169 * 179.97438 * 8 7 5 30 30 H 1.09004 * 109.46883 * 299.72150 * 15 13 4 31 31 H 1.08998 * 109.47663 * 59.72783 * 15 13 4 32 32 H 1.08005 * 125.85606 * 0.03898 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0969 -1.3317 0.3635 5 6 3.4435 -1.6040 1.6617 6 1 4.0932 -2.4377 1.8835 7 6 2.9589 -0.8074 2.6919 8 7 1.8760 -0.0856 2.5105 9 14 3.8470 -0.7627 4.3347 10 1 4.8687 0.3149 4.3159 11 1 2.8680 -0.4978 5.4195 12 1 4.5102 -2.0696 4.5746 13 6 3.2060 -2.2896 -0.5783 14 8 3.6104 -3.3928 -0.2773 15 6 2.8309 -1.9883 -2.0064 16 7 3.0431 -3.1817 -2.8293 17 6 2.1352 -3.7908 -3.6129 18 7 2.7087 -4.8171 -4.1835 19 6 3.9842 -4.9041 -3.7835 20 6 4.9561 -5.9424 -4.2102 21 7 6.2349 -6.0491 -3.8232 22 7 6.7302 -7.0808 -4.4183 23 7 5.8195 -7.6159 -5.1542 24 1 5.9360 -8.4052 -5.7060 25 7 4.7276 -6.9411 -5.0393 26 7 4.2328 -3.9183 -2.9500 27 1 2.9710 0.7308 0.7234 28 1 2.9712 0.2623 -0.9939 29 1 1.5375 0.4703 3.2298 30 1 1.7815 -1.6970 -2.0527 31 1 3.4510 -1.1739 -2.3810 32 1 1.1090 -3.4830 -3.7491 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349715.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:02 Heat of formation + Delta-G solvation = 241.491942 kcal Electronic energy + Delta-G solvation = -23339.623437 eV Core-core repulsion = 19570.384933 eV Total energy + Delta-G solvation = -3769.238504 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.093 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.54038 -41.97999 -39.00397 -36.02014 -34.73461 -34.47353 -34.02710 -32.89930 -31.99421 -31.13933 -28.35745 -27.53403 -25.23247 -24.72721 -24.24044 -22.04250 -21.11625 -19.67737 -19.16202 -18.12499 -17.28809 -17.16554 -16.71576 -16.59142 -15.37522 -15.32398 -14.82436 -14.61791 -14.25330 -14.01868 -13.93386 -13.21335 -12.96985 -12.59149 -12.36301 -12.09701 -11.82155 -11.75069 -11.46660 -11.39979 -11.25414 -11.19487 -11.15605 -10.74294 -10.49520 -10.46428 -10.01533 -9.80550 -9.45031 -9.39477 -8.71001 -8.19229 -6.64339 -4.15305 0.88732 1.36736 1.91742 2.05928 2.38376 3.00981 3.16786 3.20193 3.23085 3.33899 3.36288 3.55427 3.75969 3.93317 4.01940 4.44333 4.63434 4.73884 4.80460 4.94285 5.04592 5.17515 5.32683 5.37119 5.46739 5.85325 6.10774 6.26315 6.28260 6.29407 6.76710 7.35693 7.70436 7.95826 8.11874 8.14709 8.53951 8.83564 9.00795 9.50592 10.41742 Molecular weight = 303.09amu Principal moments of inertia in cm(-1) A = 0.021359 B = 0.003593 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.608512 B = 7790.699454 C = 8866.026535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.239 3.761 3 C 0.217 3.783 4 N -0.435 5.435 5 C -0.314 4.314 6 H 0.110 0.890 7 C 0.036 3.964 8 N -0.874 5.874 9 Si 0.929 3.071 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.440 3.560 14 O -0.541 6.541 15 C 0.108 3.892 16 N -0.345 5.345 17 C 0.258 3.742 18 N -0.517 5.517 19 C 0.276 3.724 20 C 0.273 3.727 21 N -0.239 5.239 22 N -0.052 5.052 23 N -0.229 5.229 24 H 0.476 0.524 25 N -0.260 5.260 26 N -0.218 5.218 27 H 0.129 0.871 28 H 0.086 0.914 29 H 0.275 0.725 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.882 -3.398 -13.824 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.144 5.144 2 C -0.080 4.080 3 C 0.089 3.911 4 N -0.157 5.157 5 C -0.440 4.440 6 H 0.128 0.872 7 C -0.169 4.169 8 N -0.512 5.512 9 Si 0.756 3.244 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.192 1.192 13 C 0.226 3.774 14 O -0.420 6.420 15 C -0.018 4.018 16 N -0.136 5.136 17 C -0.038 4.038 18 N -0.245 5.245 19 C -0.007 4.007 20 C -0.010 4.010 21 N -0.114 5.114 22 N -0.047 5.047 23 N -0.075 5.075 24 H 0.331 0.669 25 N -0.114 5.114 26 N -0.049 5.049 27 H 0.147 0.853 28 H 0.104 0.896 29 H 0.086 0.914 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.383 -4.130 -13.364 14.390 hybrid contribution -0.136 0.134 0.839 0.861 sum 3.247 -3.996 -12.524 13.541 Atomic orbital electron populations 1.80935 1.13447 1.07979 1.12000 1.29280 0.95328 0.92994 0.90362 1.18779 0.81720 0.89236 1.01369 1.43587 1.56503 1.07249 1.08351 1.19735 1.27922 1.16420 0.79965 0.87233 1.25310 0.94695 0.96949 0.99954 1.69817 1.17844 1.28564 1.34978 0.85860 0.78985 0.79231 0.80373 1.19953 1.21040 1.19208 1.19862 0.85880 0.85721 0.85969 1.90677 1.48529 1.21866 1.80963 1.21902 1.04212 0.84102 0.91585 1.50095 1.07544 1.22615 1.33365 1.26058 0.97925 0.89626 0.90202 1.70413 1.05593 1.19946 1.28566 1.19562 0.89694 0.94175 0.97254 1.21327 0.90145 0.93715 0.95818 1.76269 1.06759 1.09875 1.18486 1.78986 1.17338 1.04481 1.03898 1.47798 1.04234 1.23831 1.31685 0.66916 1.75063 1.09876 1.06617 1.19887 1.78583 1.04025 1.05859 1.16457 0.85302 0.89598 0.91422 0.86173 0.86766 0.75760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -9.76 18.54 42.15 0.78 -8.98 16 2 C 0.24 4.57 12.84 -20.76 -0.27 4.31 16 3 C 0.22 3.67 4.91 -6.83 -0.03 3.63 16 4 N -0.44 -9.20 2.60 -117.93 -0.31 -9.51 16 5 C -0.31 -7.63 9.27 -14.93 -0.14 -7.77 16 6 H 0.11 2.89 7.43 -52.49 -0.39 2.50 16 7 C 0.04 0.83 4.84 -17.47 -0.08 0.74 16 8 N -0.87 -20.70 9.58 55.50 0.53 -20.17 16 9 Si 0.93 18.92 29.60 -169.99 -5.03 13.89 16 10 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 11 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 12 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 13 C 0.44 9.15 7.60 -10.99 -0.08 9.06 16 14 O -0.54 -13.87 15.41 5.55 0.09 -13.78 16 15 C 0.11 1.58 5.63 -5.19 -0.03 1.55 16 16 N -0.34 -5.60 3.41 -63.82 -0.22 -5.82 16 17 C 0.26 3.56 12.61 -90.70 -1.14 2.42 16 18 N -0.52 -8.45 11.21 -12.37 -0.14 -8.59 16 19 C 0.28 4.97 8.08 -156.64 -1.27 3.70 16 20 C 0.27 4.52 8.31 -156.31 -1.30 3.22 16 21 N -0.24 -3.97 12.54 32.16 0.40 -3.57 16 22 N -0.05 -0.67 13.47 60.35 0.81 0.15 16 23 N -0.23 -2.23 7.90 60.35 0.48 -1.76 16 24 H 0.48 1.92 8.96 -340.37 -3.05 -1.13 16 25 N -0.26 -3.52 12.40 32.17 0.40 -3.12 16 26 N -0.22 -4.20 11.85 32.11 0.38 -3.82 16 27 H 0.13 2.28 6.63 -51.93 -0.34 1.94 16 28 H 0.09 0.98 6.68 -51.93 -0.35 0.64 16 29 H 0.28 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.12 1.42 7.45 -51.93 -0.39 1.03 16 31 H 0.11 1.29 7.41 -51.93 -0.38 0.90 16 32 H 0.23 1.88 8.06 -52.48 -0.42 1.46 16 LS Contribution 304.85 15.07 4.59 4.59 Total: -1.00 -35.92 304.85 -6.04 -41.96 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -4.46 Total: -2.33 kcal Atomic # 6 Polarization: 25.21 SS G_CDS: -4.34 Total: 20.87 kcal Atomic # 7 Polarization: -68.32 SS G_CDS: 3.12 Total: -65.19 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: 0.09 Total: -13.78 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -35.92 -6.04 -41.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349715.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 283.451 kcal (2) G-P(sol) polarization free energy of solvation -35.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 247.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 241.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds