Wall clock time and date at job start Tue Mar 31 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43209 * 179.97438 * 2 1 4 4 C 1.39626 * 120.14996 * 296.66589 * 3 2 1 5 5 C 1.37947 * 119.84448 * 179.72123 * 4 3 2 6 6 C 1.38362 * 120.14934 * 0.26455 * 5 4 3 7 7 C 1.50707 * 119.84684 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47125 * 340.00422 * 7 6 5 9 9 N 1.46896 * 109.47459 * 220.00140 * 7 6 5 10 10 C 1.46897 * 111.00212 * 155.00484 * 9 7 6 11 11 C 1.50699 * 109.47352 * 180.02562 * 10 9 7 12 12 O 1.21292 * 119.99673 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00191 * 179.97438 * 11 10 9 14 14 C 1.37098 * 120.00107 * 179.97438 * 13 11 10 15 15 H 1.08002 * 119.99863 * 0.02562 * 14 13 11 16 16 C 1.38947 * 120.00293 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99815 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 120.00317 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47093 * 59.99848 * 18 16 14 20 20 H 1.48508 * 109.47260 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47192 * 299.99854 * 18 16 14 22 22 C 1.50704 * 109.46873 * 99.99882 * 7 6 5 23 23 O 1.20826 * 119.99651 * 119.99914 * 22 7 6 24 24 O 1.34231 * 120.00120 * 300.00496 * 22 7 6 25 25 C 1.38361 * 120.31099 * 0.02562 * 6 5 4 26 26 C 1.37949 * 120.14316 * 0.02562 * 25 6 5 27 27 H 1.08002 * 120.08162 * 0.02562 * 4 3 2 28 28 H 1.07999 * 119.92426 * 180.27702 * 5 4 3 29 29 H 1.00896 * 110.99970 * 31.04035 * 9 7 6 30 30 H 1.09003 * 109.46602 * 299.99892 * 10 9 7 31 31 H 1.08993 * 109.47282 * 59.99796 * 10 9 7 32 32 H 0.97001 * 120.00056 * 0.02562 * 13 11 10 33 33 H 0.97002 * 120.00116 * 180.02562 * 17 16 14 34 34 H 0.96700 * 116.99842 * 180.02562 * 24 22 7 35 35 H 1.07993 * 119.93080 * 179.97438 * 25 6 5 36 36 H 1.08002 * 120.07174 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2695 -0.5409 1.0789 5 6 4.6490 -0.5422 1.0698 6 6 5.3373 -0.0035 -0.0028 7 6 6.8443 -0.0080 -0.0055 8 1 7.2091 -0.1305 1.0143 9 7 7.3369 1.2633 -0.5524 10 6 8.6860 1.5631 -0.0546 11 6 9.1565 2.8717 -0.6353 12 8 8.4387 3.4931 -1.3901 13 7 10.3748 3.3514 -0.3160 14 6 10.8030 4.5416 -0.8448 15 1 10.1639 5.0950 -1.5168 16 6 12.0593 5.0360 -0.5160 17 7 12.8372 4.3624 0.3013 18 14 12.6424 6.6580 -1.2359 19 1 11.7127 7.7425 -0.8299 20 1 14.0061 6.9614 -0.7321 21 1 12.6720 6.5601 -2.7173 22 6 7.3417 -1.1476 -0.8571 23 8 8.0353 -0.9236 -1.8207 24 8 7.0142 -2.4114 -0.5450 25 6 4.6485 0.5401 -1.0726 26 6 3.2690 0.5489 -1.0759 27 1 2.7335 -0.9622 1.9165 28 1 5.1929 -0.9648 1.9016 29 1 6.6991 2.0172 -0.3454 30 1 8.6642 1.6355 1.0328 31 1 9.3683 0.7669 -0.3521 32 1 10.9490 2.8542 0.2873 33 1 13.7140 4.7076 0.5311 34 1 7.3571 -3.1086 -1.1206 35 1 5.1919 0.9593 -1.9064 36 1 2.7325 0.9733 -1.9117 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608188525.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:45:03 Heat of formation + Delta-G solvation = -60.388847 kcal Electronic energy + Delta-G solvation = -23129.903343 eV Core-core repulsion = 19386.529147 eV Total energy + Delta-G solvation = -3743.374196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.105 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73300 -39.53906 -38.29462 -36.95044 -36.25401 -35.40519 -33.90979 -32.04743 -31.45994 -31.19575 -28.41100 -25.97414 -24.08435 -23.63479 -23.04051 -20.90992 -19.38224 -19.24584 -18.23831 -17.94150 -16.98840 -16.70719 -16.12678 -15.48536 -15.07622 -14.97779 -14.74268 -14.43507 -14.41011 -14.26275 -13.84684 -13.73572 -13.53224 -13.33020 -12.96815 -12.89786 -12.52898 -12.24389 -11.83451 -11.72654 -11.52934 -11.45250 -11.32202 -11.02551 -10.64664 -10.44905 -10.22633 -9.51455 -9.38236 -9.18569 -8.62391 -8.28126 -7.98352 -6.42953 -3.83837 0.31745 0.98784 2.18256 2.34625 2.55385 2.84762 3.19755 3.25680 3.30028 3.49851 3.52978 3.87050 3.97354 4.19766 4.25940 4.49727 4.53705 4.85251 4.97198 5.08310 5.16373 5.21426 5.24036 5.34990 5.60905 5.65881 5.77336 5.88420 5.93673 6.09273 6.20190 6.40366 6.46290 6.83400 7.15123 7.35092 7.54116 7.91385 8.03796 8.58705 9.16032 9.51675 10.02495 10.74663 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.002921 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.157371 B = 9582.730041 C =10424.534176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.257 3.743 3 C -0.026 4.026 4 C -0.073 4.073 5 C -0.096 4.096 6 C -0.065 4.065 7 C 0.138 3.862 8 H 0.094 0.906 9 N -0.644 5.644 10 C 0.049 3.951 11 C 0.444 3.556 12 O -0.581 6.581 13 N -0.562 5.562 14 C -0.299 4.299 15 H 0.103 0.897 16 C 0.023 3.977 17 N -0.902 5.902 18 Si 0.931 3.069 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.273 1.273 22 C 0.478 3.522 23 O -0.477 6.477 24 O -0.521 6.521 25 C -0.092 4.092 26 C -0.069 4.069 27 H 0.135 0.865 28 H 0.138 0.862 29 H 0.367 0.633 30 H 0.050 0.950 31 H 0.090 0.910 32 H 0.392 0.608 33 H 0.272 0.728 34 H 0.409 0.591 35 H 0.150 0.850 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.092 -13.847 4.439 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.059 4.059 3 C -0.029 4.029 4 C -0.093 4.093 5 C -0.114 4.114 6 C -0.066 4.066 7 C 0.027 3.973 8 H 0.112 0.888 9 N -0.281 5.281 10 C -0.083 4.083 11 C 0.229 3.771 12 O -0.465 6.465 13 N -0.198 5.198 14 C -0.429 4.429 15 H 0.121 0.879 16 C -0.179 4.179 17 N -0.543 5.543 18 Si 0.758 3.242 19 H -0.199 1.199 20 H -0.210 1.210 21 H -0.199 1.199 22 C 0.316 3.684 23 O -0.361 6.361 24 O -0.333 6.333 25 C -0.111 4.111 26 C -0.090 4.090 27 H 0.153 0.847 28 H 0.156 0.844 29 H 0.190 0.810 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.226 0.774 33 H 0.082 0.918 34 H 0.268 0.732 35 H 0.168 0.832 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.856 -13.249 3.387 20.192 hybrid contribution 1.339 0.222 0.553 1.466 sum -13.517 -13.027 3.940 19.182 Atomic orbital electron populations 1.81260 1.12117 1.08512 1.07598 1.25737 0.92685 0.93697 0.93752 1.16080 0.84255 1.04942 0.97664 1.21107 0.93971 0.97409 0.96839 1.20965 0.93563 0.98720 0.98189 1.19749 0.93112 0.98560 0.95182 1.19832 0.91196 0.89689 0.96626 0.88830 1.59600 1.04066 1.02172 1.62249 1.21806 0.90523 0.98927 0.97081 1.19584 0.83814 0.87259 0.86408 1.90529 1.55837 1.60796 1.39380 1.41823 1.14105 1.21205 1.42668 1.19653 1.00108 0.97416 1.25717 0.87901 1.25264 0.95970 0.99766 0.96898 1.69603 1.10532 1.39354 1.34798 0.85910 0.77576 0.81393 0.79300 1.19900 1.20989 1.19850 1.23229 0.77835 0.83062 0.84266 1.90786 1.34030 1.84459 1.26780 1.84498 1.72756 1.17354 1.58663 1.21224 0.93455 0.97635 0.98741 1.21227 0.94118 0.96753 0.96893 0.84687 0.84389 0.80961 0.93205 0.89167 0.77446 0.91796 0.73240 0.83221 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.04 18.54 41.83 0.78 -4.27 16 2 C 0.26 2.48 15.33 -22.47 -0.34 2.13 16 3 C -0.03 -0.21 5.73 -106.93 -0.61 -0.82 16 4 C -0.07 -0.47 9.76 -39.17 -0.38 -0.86 16 5 C -0.10 -0.65 9.65 -39.64 -0.38 -1.03 16 6 C -0.06 -0.57 4.65 -104.53 -0.49 -1.06 16 7 C 0.14 1.47 2.72 -70.01 -0.19 1.28 16 8 H 0.09 0.79 7.65 -51.93 -0.40 0.39 16 9 N -0.64 -9.34 4.84 -110.46 -0.53 -9.88 16 10 C 0.05 0.81 5.86 -4.98 -0.03 0.78 16 11 C 0.44 10.15 7.82 -10.99 -0.09 10.07 16 12 O -0.58 -15.27 15.78 5.55 0.09 -15.18 16 13 N -0.56 -13.95 5.29 -10.97 -0.06 -14.01 16 14 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 15 H 0.10 2.96 7.16 -52.49 -0.38 2.59 16 16 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 17 N -0.90 -24.23 13.05 55.50 0.72 -23.51 16 18 Si 0.93 20.86 29.55 -169.99 -5.02 15.84 16 19 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 22 C 0.48 5.66 7.49 36.01 0.27 5.93 16 23 O -0.48 -7.75 16.68 -18.75 -0.31 -8.06 16 24 O -0.52 -4.34 13.34 -39.26 -0.52 -4.86 16 25 C -0.09 -0.85 8.98 -39.64 -0.36 -1.21 16 26 C -0.07 -0.56 9.76 -39.17 -0.38 -0.94 16 27 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 28 H 0.14 0.64 8.03 -52.49 -0.42 0.22 16 29 H 0.37 5.22 7.68 -39.29 -0.30 4.92 16 30 H 0.05 0.69 8.06 -51.93 -0.42 0.27 16 31 H 0.09 1.49 7.62 -51.93 -0.40 1.10 16 32 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 33 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 34 H 0.41 1.90 9.10 45.56 0.41 2.32 16 35 H 0.15 1.58 7.70 -52.49 -0.40 1.18 16 36 H 0.14 0.91 8.06 -52.49 -0.42 0.48 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -34.81 336.63 -5.62 -40.42 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -2.60 Total: 12.02 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -3.22 Total: 6.41 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.91 Total: -51.66 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.75 Total: -28.11 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.81 -5.62 -40.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608188525.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.965 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds