Wall clock time and date at job start Tue Mar 31 2020 03:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99803 * 2 1 4 4 H 1.48504 * 109.46972 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47677 * 119.99954 * 3 2 1 6 6 H 1.48507 * 109.47045 * 240.00010 * 3 2 1 7 7 C 1.38809 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99949 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00354 * 359.97438 * 7 2 1 10 10 C 1.46497 * 120.00073 * 176.69763 * 9 7 2 11 11 C 1.53001 * 115.55249 * 294.98604 * 10 9 7 12 12 N 1.46500 * 109.47084 * 324.37055 * 11 10 9 13 13 C 1.34779 * 119.99719 * 174.42269 * 12 11 10 14 14 O 1.21280 * 120.00192 * 359.97438 * 13 12 11 15 15 C 1.50699 * 119.99932 * 179.97438 * 13 12 11 16 16 H 1.08997 * 108.58194 * 40.69814 * 15 13 12 17 17 C 1.53203 * 108.64457 * 282.70339 * 15 13 12 18 18 C 1.55353 * 106.34149 * 211.21806 * 17 15 13 19 19 S 1.83897 * 99.54656 * 37.17708 * 18 17 15 20 20 O 1.42093 * 111.46793 * 215.81835 * 19 18 17 21 21 O 1.42107 * 111.45932 * 75.76684 * 19 18 17 22 22 N 1.46445 * 108.64901 * 158.69595 * 15 13 12 23 23 C 1.52998 * 117.49630 * 149.32271 * 10 9 7 24 24 C 1.53004 * 117.49755 * 80.66278 * 10 9 7 25 25 H 0.96999 * 120.00064 * 0.02562 * 1 2 3 26 26 H 0.97001 * 119.99610 * 356.70305 * 9 7 2 27 27 H 1.09011 * 109.46335 * 84.36661 * 11 10 9 28 28 H 1.08998 * 109.47555 * 204.36358 * 11 10 9 29 29 H 0.97000 * 120.00210 * 354.42341 * 12 11 10 30 30 H 1.08999 * 110.09629 * 330.53070 * 17 15 13 31 31 H 1.08995 * 110.10427 * 92.14761 * 17 15 13 32 32 H 1.09003 * 111.49473 * 279.57425 * 18 17 15 33 33 H 1.09001 * 111.37452 * 154.73995 * 18 17 15 34 34 H 0.97000 * 126.08264 * 302.86283 * 22 15 13 35 35 H 1.08998 * 117.50233 * 359.97438 * 23 10 9 36 36 H 1.09005 * 117.49855 * 145.02326 * 23 10 9 37 37 H 1.09004 * 117.49310 * 214.97734 * 24 10 9 38 38 H 1.08997 * 117.49844 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2851 2.7464 -0.0006 5 1 3.1039 1.6966 1.2124 6 1 3.1039 1.6964 -1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3257 -2.3880 0.0016 10 6 2.0564 -3.6557 -0.0709 11 6 2.8272 -3.8998 -1.3699 12 7 2.0748 -3.3419 -2.4963 13 6 2.6140 -3.3393 -3.7315 14 8 3.7223 -3.7982 -3.9104 15 6 1.8399 -2.7660 -4.8904 16 1 1.3372 -1.8580 -4.5572 17 6 0.7785 -3.7833 -5.3216 18 6 0.5862 -3.5926 -6.8513 19 16 2.3253 -3.2425 -7.3361 20 8 2.3902 -2.2880 -8.3867 21 8 3.1110 -4.4265 -7.3444 22 7 2.7820 -2.4156 -5.9554 23 6 1.4336 -4.8705 0.6198 24 6 2.6666 -4.1944 1.2246 25 1 -0.4850 0.8400 -0.0004 26 1 0.3569 -2.3887 0.0503 27 1 3.8026 -3.4168 -1.3096 28 1 2.9609 -4.9714 -1.5172 29 1 1.1885 -2.9746 -2.3532 30 1 1.1223 -4.7957 -5.1096 31 1 -0.1596 -3.5890 -4.8018 32 1 -0.0650 -2.7461 -7.0695 33 1 0.2184 -4.5042 -7.3221 34 1 3.5369 -1.8119 -5.8745 35 1 0.4804 -4.7266 1.1285 36 1 1.5734 -5.8437 0.1491 37 1 3.6171 -4.7231 1.1514 38 1 2.5248 -3.6055 2.1307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670900660.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:47 Heat of formation + Delta-G solvation = -55.078631 kcal Electronic energy + Delta-G solvation = -23363.183806 eV Core-core repulsion = 19755.483830 eV Total energy + Delta-G solvation = -3607.699976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 303.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.84733 -37.77699 -37.15999 -36.30877 -35.92522 -33.72073 -33.19228 -31.94421 -29.79667 -28.14972 -25.61098 -24.00340 -22.73377 -21.90918 -20.10657 -19.70779 -19.24074 -17.94046 -17.34474 -17.20783 -16.71983 -15.97888 -15.75810 -15.14178 -14.84103 -14.61687 -14.34524 -13.86903 -13.77924 -13.56489 -13.29848 -13.13575 -12.86945 -12.21234 -12.19505 -12.08586 -12.06244 -11.94984 -11.50664 -11.07963 -11.00124 -10.97555 -10.74458 -10.42841 -10.36457 -10.14120 -9.85006 -9.42530 -9.19223 -8.95372 -8.51084 -7.21598 -5.95886 -3.27136 0.09761 2.38672 2.86025 3.33562 3.39025 3.40105 3.42805 3.48552 3.70647 4.07376 4.28973 4.33383 4.47771 4.67303 4.84458 5.02097 5.14667 5.21278 5.22889 5.27573 5.40885 5.46771 5.49494 5.65330 5.83714 6.06174 6.13712 6.31105 6.38571 6.53793 6.71123 6.90371 6.98894 7.60161 7.96163 8.21859 8.56768 9.33970 9.84906 10.21014 11.25347 Molecular weight = 303.11amu Principal moments of inertia in cm(-1) A = 0.015182 B = 0.004605 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1843.846379 B = 6079.297871 C = 7142.295313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.007 4.007 3 Si 0.906 3.094 4 H -0.291 1.291 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.688 5.688 10 C 0.127 3.873 11 C 0.152 3.848 12 N -0.695 5.695 13 C 0.497 3.503 14 O -0.536 6.536 15 C 0.096 3.904 16 H 0.113 0.887 17 C -0.117 4.117 18 C -0.590 4.590 19 S 2.572 3.428 20 O -0.961 6.961 21 O -0.945 6.945 22 N -1.075 6.075 23 C -0.185 4.185 24 C -0.192 4.192 25 H 0.257 0.743 26 H 0.388 0.612 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.410 0.590 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.439 0.561 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -8.581 -9.455 12.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.329 5.329 10 C 0.033 3.967 11 C 0.025 3.975 12 N -0.347 5.347 13 C 0.279 3.721 14 O -0.413 6.413 15 C -0.017 4.017 16 H 0.130 0.870 17 C -0.157 4.157 18 C -0.720 4.720 19 S 2.665 3.335 20 O -0.951 6.951 21 O -0.934 6.934 22 N -0.840 5.840 23 C -0.223 4.223 24 C -0.232 4.232 25 H 0.067 0.933 26 H 0.223 0.777 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.247 0.753 30 H 0.119 0.881 31 H 0.141 0.859 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.279 0.721 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.011 -8.979 -10.433 13.802 hybrid contribution -0.440 1.556 0.929 1.865 sum -1.452 -7.423 -9.505 12.147 Atomic orbital electron populations 1.69633 1.05009 1.26083 1.57202 1.24719 0.95496 0.97639 1.02501 0.86292 0.78597 0.83386 0.78047 1.21650 1.21184 1.21185 1.19092 0.91066 0.83335 1.43195 0.91167 1.41792 1.05418 0.98489 1.87152 1.20222 0.98374 0.87483 0.90629 1.21087 0.95111 0.96697 0.84604 1.45795 1.21468 1.60908 1.06490 1.20643 0.87244 0.79939 0.84243 1.90710 1.19688 1.46380 1.84505 1.21140 0.90346 1.00659 0.89552 0.86963 1.22333 1.00063 1.00253 0.93007 1.30732 1.23755 1.12656 1.04892 1.06400 0.78544 0.75126 0.73411 1.93612 1.86275 1.60843 1.54359 1.93679 1.64774 1.49028 1.85881 1.54627 1.40781 1.63447 1.25174 1.23195 0.98048 0.96028 1.05012 1.23370 0.95927 1.04134 0.99787 0.93279 0.77654 0.91514 0.92289 0.75309 0.88108 0.85926 0.83607 0.83864 0.72072 0.89074 0.89365 0.89892 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.20 13.06 55.49 0.72 -24.47 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.09 16 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.24 -5.84 9.81 -15.06 -0.15 -5.99 16 8 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 9 N -0.69 -14.77 4.49 -47.23 -0.21 -14.99 16 10 C 0.13 2.23 2.46 -131.82 -0.32 1.90 16 11 C 0.15 2.56 5.69 -4.04 -0.02 2.54 16 12 N -0.69 -11.09 5.40 -60.29 -0.33 -11.42 16 13 C 0.50 7.92 6.82 -10.99 -0.07 7.85 16 14 O -0.54 -10.50 16.52 5.56 0.09 -10.40 16 15 C 0.10 1.14 3.55 -69.01 -0.25 0.89 16 16 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.12 -0.99 6.04 -25.38 -0.15 -1.14 16 18 C -0.59 -4.05 7.65 38.41 0.29 -3.76 16 19 S 2.57 29.44 6.47 -107.50 -0.70 28.75 16 20 O -0.96 -13.59 18.14 -57.37 -1.04 -14.63 16 21 O -0.94 -14.59 18.14 -57.37 -1.04 -15.63 16 22 N -1.07 -13.19 6.14 -5.82 -0.04 -13.23 16 23 C -0.19 -2.73 10.11 -26.69 -0.27 -3.00 16 24 C -0.19 -3.11 10.18 -26.69 -0.27 -3.38 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.39 8.84 8.03 -40.82 -0.33 8.51 16 27 H 0.07 1.26 8.13 -51.92 -0.42 0.84 16 28 H 0.06 0.91 7.91 -51.93 -0.41 0.50 16 29 H 0.41 6.41 7.79 -40.82 -0.32 6.09 16 30 H 0.10 0.88 7.82 -51.93 -0.41 0.47 16 31 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.15 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.14 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.44 5.24 8.96 -40.36 -0.36 4.88 16 35 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 37 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 LS Contribution 336.86 15.07 5.08 5.08 Total: -1.00 -34.73 336.86 -8.96 -43.69 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -5.17 Total: 15.53 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -1.31 Total: -4.37 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: 0.15 Total: -64.10 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -1.99 Total: -40.67 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 29.44 SS G_CDS: -0.70 Total: 28.75 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.73 -8.96 -43.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670900660.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.385 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds