Wall clock time and date at job start Tue Mar 31 2020 03:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86795 * 120.00156 * 2 1 4 4 H 1.48497 * 109.47120 * 275.15926 * 3 2 1 5 5 H 1.48507 * 109.47182 * 35.15411 * 3 2 1 6 6 H 1.48497 * 109.47409 * 155.15419 * 3 2 1 7 7 C 1.39941 * 119.99715 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00388 * 340.86142 * 7 2 1 9 9 C 1.41441 * 119.99523 * 160.86323 * 7 2 1 10 10 C 1.40778 * 120.18138 * 334.47772 * 9 7 2 11 11 C 1.37710 * 120.04342 * 180.02562 * 10 9 7 12 12 C 1.38370 * 120.40873 * 0.02562 * 11 10 9 13 13 C 1.39879 * 120.36190 * 359.97030 * 12 11 10 14 14 C 1.47890 * 120.02721 * 180.02562 * 13 12 11 15 15 O 1.21544 * 120.00146 * 212.54146 * 14 13 12 16 16 N 1.34774 * 119.99779 * 32.53674 * 14 13 12 17 17 C 1.46923 * 120.63293 * 358.44367 * 16 14 13 18 18 C 1.53191 * 108.77928 * 126.40887 * 17 16 14 19 19 C 1.53045 * 109.31192 * 54.63093 * 18 17 16 20 20 C 1.53038 * 109.54050 * 298.63780 * 19 18 17 21 21 H 1.09002 * 109.52400 * 301.39708 * 20 19 18 22 22 C 1.50697 * 109.49800 * 181.31590 * 20 19 18 23 23 O 1.20828 * 120.00248 * 359.88785 * 22 20 19 24 24 O 1.34229 * 119.99961 * 180.16287 * 22 20 19 25 25 C 1.46929 * 120.62965 * 178.45528 * 16 14 13 26 26 C 1.39029 * 119.94585 * 0.28186 * 13 12 11 27 27 H 0.96998 * 120.00039 * 0.02562 * 1 2 3 28 28 H 1.07998 * 119.97864 * 0.02634 * 10 9 7 29 29 H 1.08001 * 119.79841 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.81885 * 180.02562 * 12 11 10 31 31 H 1.09003 * 109.58675 * 246.19652 * 17 16 14 32 32 H 1.09001 * 109.58595 * 6.61932 * 17 16 14 33 33 H 1.08999 * 109.50158 * 174.58658 * 18 17 16 34 34 H 1.09005 * 109.49850 * 294.68350 * 18 17 16 35 35 H 1.09003 * 109.45789 * 178.61775 * 19 18 17 36 36 H 1.09002 * 109.45589 * 58.66117 * 19 18 17 37 37 H 0.96700 * 117.00236 * 180.02562 * 24 22 20 38 38 H 1.08997 * 109.58476 * 113.80206 * 25 16 14 39 39 H 1.09006 * 109.70001 * 353.45386 * 25 16 14 40 40 H 1.08002 * 120.20012 * 179.69887 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3808 2.1093 -1.3944 5 1 1.4985 2.6188 0.8062 6 1 3.5901 1.4111 0.5883 7 6 2.0080 -1.2120 -0.0005 8 1 1.5127 -2.1216 0.3057 9 6 3.3637 -1.2456 -0.4021 10 6 3.8670 -0.2650 -1.2780 11 6 5.1873 -0.3008 -1.6675 12 6 6.0277 -1.2974 -1.2037 13 6 5.5456 -2.2801 -0.3328 14 6 6.4505 -3.3416 0.1589 15 8 6.0158 -4.4538 0.3856 16 7 7.7570 -3.0757 0.3554 17 6 8.3040 -1.7459 0.0534 18 6 9.0336 -1.2196 1.2933 19 6 10.0805 -2.2439 1.7374 20 6 9.3871 -3.5574 2.1062 21 1 8.6659 -3.3774 2.9034 22 6 10.4154 -4.5548 2.5740 23 8 11.5835 -4.2479 2.6072 24 8 10.0342 -5.7861 2.9486 25 6 8.6615 -4.1101 0.8755 26 6 4.2139 -2.2613 0.0660 27 1 -0.4850 0.8400 -0.0004 28 1 3.2171 0.5158 -1.6446 29 1 5.5691 0.4532 -2.3399 30 1 7.0617 -1.3161 -1.5150 31 1 9.0040 -1.8191 -0.7789 32 1 7.4919 -1.0675 -0.2081 33 1 9.5257 -0.2771 1.0533 34 1 8.3156 -1.0610 2.0981 35 1 10.6180 -1.8610 2.6050 36 1 10.7838 -2.4204 0.9236 37 1 10.7295 -6.3909 3.2415 38 1 9.3907 -4.3762 0.1102 39 1 8.0873 -4.9933 1.1558 40 1 3.8362 -3.0209 0.7344 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242598.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:13 Heat of formation + Delta-G solvation = -93.995362 kcal Electronic energy + Delta-G solvation = -24557.673998 eV Core-core repulsion = 20916.382858 eV Total energy + Delta-G solvation = -3641.291140 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.90945 -39.87438 -37.69188 -37.01320 -36.31502 -33.97299 -33.00868 -31.74218 -30.51342 -30.03699 -25.85636 -25.75031 -24.65481 -22.70025 -22.07573 -20.80496 -20.37701 -19.25981 -18.30726 -17.78177 -16.82684 -16.29404 -16.22649 -16.02017 -15.34855 -14.90786 -14.77010 -14.31641 -14.16583 -13.77680 -13.58060 -13.42646 -12.96711 -12.86939 -12.64024 -12.60433 -12.11548 -11.90028 -11.75654 -11.56844 -11.18452 -11.15736 -11.10700 -10.86772 -10.77430 -10.74805 -10.30641 -9.94220 -9.74533 -9.40478 -9.17061 -8.58245 -7.91008 -7.78280 -7.09949 -4.61905 1.89443 1.94065 2.44849 2.70525 2.99326 3.12554 3.18744 3.21575 3.44453 3.85132 4.32518 4.36255 4.56266 4.70234 4.89176 5.01269 5.09705 5.21657 5.26745 5.37858 5.49614 5.60626 5.68706 5.79207 5.80758 5.87698 5.96761 6.01904 6.14659 6.23859 6.30475 6.57253 6.61619 6.66390 6.91329 7.16080 7.33048 7.44497 7.59506 7.62853 7.69174 7.90248 8.19996 8.46679 8.55275 8.63665 9.91509 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.025778 B = 0.003551 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1085.923882 B = 7884.023111 C = 8260.665211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.081 3.919 3 Si 0.917 3.083 4 H -0.269 1.269 5 H -0.291 1.291 6 H -0.243 1.243 7 C -0.436 4.436 8 H 0.094 0.906 9 C 0.085 3.915 10 C -0.230 4.230 11 C -0.077 4.077 12 C -0.243 4.243 13 C -0.098 4.098 14 C 0.569 3.431 15 O -0.543 6.543 16 N -0.610 5.610 17 C 0.065 3.935 18 C -0.135 4.135 19 C -0.104 4.104 20 C -0.096 4.096 21 H 0.115 0.885 22 C 0.489 3.511 23 O -0.515 6.515 24 O -0.512 6.512 25 C 0.124 3.876 26 C -0.145 4.145 27 H 0.288 0.712 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.117 0.883 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.409 0.591 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.033 -1.198 2.763 17.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.139 4.139 3 Si 0.744 3.256 4 H -0.196 1.196 5 H -0.219 1.219 6 H -0.166 1.166 7 C -0.463 4.463 8 H 0.112 0.888 9 C 0.082 3.918 10 C -0.250 4.250 11 C -0.095 4.095 12 C -0.262 4.262 13 C -0.101 4.101 14 C 0.360 3.640 15 O -0.421 6.421 16 N -0.344 5.344 17 C -0.057 4.057 18 C -0.173 4.173 19 C -0.141 4.141 20 C -0.116 4.116 21 H 0.133 0.867 22 C 0.331 3.669 23 O -0.403 6.403 24 O -0.323 6.323 25 C 0.001 3.999 26 C -0.166 4.166 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.135 0.865 31 H 0.084 0.916 32 H 0.158 0.842 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.268 0.732 38 H 0.086 0.914 39 H 0.123 0.877 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 16.498 -1.372 2.779 16.786 hybrid contribution 0.795 0.332 0.234 0.893 sum 17.293 -1.040 3.013 17.584 Atomic orbital electron populations 1.69695 1.08208 1.30628 1.33470 1.26252 0.94800 1.02039 0.90815 0.86245 0.81251 0.79381 0.78727 1.19583 1.21859 1.16571 1.19596 0.93312 0.96407 1.37015 0.88816 1.17657 0.92931 0.91025 0.90162 1.21123 0.95941 1.03383 1.04528 1.20523 0.93679 0.97220 0.98107 1.20753 0.99016 0.99338 1.07111 1.19314 0.94089 0.95460 1.01208 1.18919 0.80804 0.88234 0.76007 1.90710 1.75550 1.23819 1.52003 1.47913 1.08171 1.12574 1.65763 1.23003 1.00907 0.85227 0.96555 1.21984 0.98011 0.98343 0.99009 1.21465 0.97704 0.92468 1.02482 1.21495 0.96138 0.93282 1.00733 0.86740 1.23374 0.89031 0.81447 0.73086 1.90713 1.20190 1.78661 1.50783 1.84596 1.45687 1.24621 1.77387 1.21328 0.93069 0.92436 0.93077 1.21109 0.90933 1.01339 1.03175 0.90141 0.88005 0.88211 0.86502 0.91632 0.84180 0.89979 0.90950 0.90833 0.90858 0.73204 0.91412 0.87696 0.87107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.42 13.93 55.55 0.77 -19.65 16 2 C 0.08 2.04 5.41 -17.34 -0.09 1.95 16 3 Si 0.92 19.60 24.43 -169.99 -4.15 15.45 16 4 H -0.27 -5.55 6.65 56.52 0.38 -5.18 16 5 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.24 -5.22 6.79 56.52 0.38 -4.83 16 7 C -0.44 -11.38 9.58 -37.73 -0.36 -11.74 16 8 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 9 C 0.09 2.08 5.21 -106.87 -0.56 1.52 16 10 C -0.23 -5.17 7.16 -38.82 -0.28 -5.45 16 11 C -0.08 -1.49 10.01 -39.73 -0.40 -1.89 16 12 C -0.24 -4.45 7.45 -38.92 -0.29 -4.74 16 13 C -0.10 -2.00 5.52 -105.04 -0.58 -2.58 16 14 C 0.57 10.89 7.45 -12.31 -0.09 10.79 16 15 O -0.54 -11.97 16.17 5.33 0.09 -11.88 16 16 N -0.61 -8.99 2.97 -173.87 -0.52 -9.51 16 17 C 0.06 0.78 4.88 -3.71 -0.02 0.76 16 18 C -0.14 -1.35 6.08 -26.61 -0.16 -1.52 16 19 C -0.10 -1.02 4.46 -26.69 -0.12 -1.14 16 20 C -0.10 -1.04 2.78 -91.66 -0.25 -1.29 16 21 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 22 C 0.49 5.24 7.63 36.00 0.27 5.51 16 23 O -0.52 -6.67 16.74 -18.75 -0.31 -6.98 16 24 O -0.51 -4.51 13.35 -39.26 -0.52 -5.03 16 25 C 0.12 1.56 5.64 -3.71 -0.02 1.54 16 26 C -0.15 -3.37 9.34 -38.44 -0.36 -3.73 16 27 H 0.29 6.63 8.30 -40.82 -0.34 6.29 16 28 H 0.10 2.28 4.19 -52.49 -0.22 2.06 16 29 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 30 H 0.12 1.75 5.29 -52.49 -0.28 1.48 16 31 H 0.07 0.68 8.13 -51.93 -0.42 0.26 16 32 H 0.14 1.89 3.55 -53.47 -0.19 1.70 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 36 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.41 1.74 9.10 45.56 0.41 2.16 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.10 1.48 7.02 -51.93 -0.36 1.12 16 40 H 0.11 2.61 7.95 -52.49 -0.42 2.20 16 LS Contribution 325.14 15.07 4.90 4.90 Total: -1.00 -30.27 325.14 -7.09 -37.36 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -4.03 Total: 7.34 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -3.31 Total: -12.00 kcal Atomic # 7 Polarization: -29.41 SS G_CDS: 0.26 Total: -29.16 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.75 Total: -23.89 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -4.15 Total: 15.45 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.27 -7.09 -37.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242598.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.635 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds