Wall clock time and date at job start Tue Mar 31 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48498 * 109.47183 * 269.99458 * 3 2 1 5 5 H 1.48495 * 109.47453 * 29.99819 * 3 2 1 6 6 H 1.48500 * 109.47056 * 149.99620 * 3 2 1 7 7 C 1.39934 * 119.99722 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99902 * 163.04363 * 7 2 1 9 9 C 1.41434 * 120.00474 * 343.04780 * 7 2 1 10 10 C 1.40786 * 120.17935 * 156.96242 * 9 7 2 11 11 C 1.37715 * 120.03860 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41060 * 359.78888 * 11 10 9 13 13 C 1.39874 * 120.35740 * 0.47316 * 12 11 10 14 14 C 1.47891 * 120.02400 * 179.78704 * 13 12 11 15 15 O 1.21544 * 120.00125 * 146.38871 * 14 13 12 16 16 N 1.34775 * 119.99625 * 326.38177 * 14 13 12 17 17 C 1.46930 * 120.63356 * 354.35067 * 16 14 13 18 18 C 1.52758 * 109.00932 * 233.58106 * 17 16 14 19 19 C 1.53036 * 109.38554 * 305.58890 * 18 17 16 20 20 C 1.53042 * 109.53841 * 61.23902 * 19 18 17 21 21 H 1.09003 * 109.52440 * 58.60371 * 20 19 18 22 22 C 1.50703 * 109.49742 * 178.68146 * 20 19 18 23 23 O 1.20826 * 119.99769 * 359.83963 * 22 20 19 24 24 O 1.34226 * 119.99773 * 179.83616 * 22 20 19 25 25 C 1.46929 * 120.63037 * 174.63097 * 16 14 13 26 26 C 1.39035 * 119.95123 * 359.50450 * 13 12 11 27 27 H 0.97000 * 119.99525 * 0.02562 * 1 2 3 28 28 H 1.07993 * 119.97945 * 0.02972 * 10 9 7 29 29 H 1.07997 * 119.79412 * 180.02562 * 11 10 9 30 30 H 1.08005 * 119.81600 * 180.22889 * 12 11 10 31 31 H 1.08998 * 109.58498 * 353.41775 * 17 16 14 32 32 H 1.08999 * 109.58524 * 113.84275 * 17 16 14 33 33 H 1.09003 * 109.56505 * 185.55024 * 18 17 16 34 34 H 1.08999 * 109.38491 * 65.51962 * 18 17 16 35 35 H 1.09000 * 109.45970 * 301.21607 * 19 18 17 36 36 H 1.09000 * 109.45913 * 181.25961 * 19 18 17 37 37 H 0.96700 * 116.99511 * 179.97438 * 24 22 20 38 38 H 1.09002 * 109.58863 * 246.15779 * 25 16 14 39 39 H 1.09004 * 109.58451 * 6.58337 * 25 16 14 40 40 H 1.08004 * 120.19865 * 180.27847 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4899 2.0464 -1.4000 5 1 1.4398 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0527 -1.2324 -0.2722 9 6 1.3468 -2.4100 0.3582 10 6 1.8447 -3.6514 -0.0814 11 6 1.1984 -4.8162 0.2681 12 6 0.0609 -4.7770 1.0551 13 6 -0.4514 -3.5527 1.4967 14 6 -1.6703 -3.5192 2.3336 15 8 -1.7960 -2.6663 3.1903 16 7 -2.6418 -4.4344 2.1461 17 6 -2.5624 -5.3938 1.0361 18 6 -3.8514 -5.3181 0.2199 19 6 -5.0519 -5.5258 1.1460 20 6 -5.0812 -4.4187 2.2021 21 1 -5.1409 -3.4477 1.7105 22 6 -6.2818 -4.6056 3.0936 23 8 -7.0386 -5.5278 2.9023 24 8 -6.5104 -3.7475 4.1002 25 6 -3.8034 -4.4877 3.0442 26 6 0.1894 -2.3676 1.1531 27 1 -0.4849 0.8401 -0.0004 28 1 2.7339 -3.6902 -0.6930 29 1 1.5840 -5.7663 -0.0710 30 1 -0.4362 -5.6967 1.3266 31 1 -1.7132 -5.1462 0.3992 32 1 -2.4428 -6.4021 1.4324 33 1 -3.8444 -6.0935 -0.5462 34 1 -3.9226 -4.3392 -0.2541 35 1 -4.9677 -6.4949 1.6379 36 1 -5.9713 -5.4944 0.5613 37 1 -7.2932 -3.9081 4.6447 38 1 -3.7871 -5.4207 3.6077 39 1 -3.7727 -3.6425 3.7318 40 1 -0.2002 -1.4203 1.4956 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058242599.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:29:17 Heat of formation + Delta-G solvation = -106.553415 kcal Electronic energy + Delta-G solvation = -24685.912954 eV Core-core repulsion = 21044.077255 eV Total energy + Delta-G solvation = -3641.835698 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.130 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.78851 -39.65774 -37.45895 -36.77365 -36.21311 -33.92680 -32.82293 -31.57617 -30.00531 -29.48750 -25.68003 -25.53807 -24.70196 -22.39277 -21.75719 -20.99180 -20.14194 -18.85915 -18.20879 -17.66954 -16.66874 -16.22141 -15.90745 -15.69617 -14.97703 -14.88213 -14.61512 -14.23865 -13.98347 -13.67509 -13.33614 -13.20049 -12.91712 -12.71141 -12.45028 -12.38101 -11.78939 -11.72748 -11.56035 -11.24051 -11.11746 -11.10022 -10.99294 -10.73339 -10.67590 -10.53037 -10.39756 -10.10892 -9.72020 -9.24025 -9.04685 -8.40450 -7.64251 -7.53971 -6.85394 -4.46263 1.99237 2.22729 2.76661 2.80965 3.04789 3.07203 3.12986 3.37957 3.68490 3.87673 4.46289 4.52856 4.68771 4.80879 5.02515 5.15046 5.26132 5.36681 5.48854 5.55565 5.62459 5.72609 5.81965 5.90207 5.96546 6.08076 6.12693 6.24850 6.29430 6.32896 6.65110 6.80436 6.93385 7.00572 7.17026 7.33703 7.61353 7.71491 7.72896 7.83965 7.94693 8.12370 8.45645 8.74643 8.77965 8.81237 10.08113 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.003904 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.821816 B = 7170.303818 C = 8017.240261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.074 3.926 3 Si 0.911 3.089 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.100 3.900 10 C -0.213 4.213 11 C -0.097 4.097 12 C -0.228 4.228 13 C -0.122 4.122 14 C 0.572 3.428 15 O -0.545 6.545 16 N -0.614 5.614 17 C 0.087 3.913 18 C -0.136 4.136 19 C -0.102 4.102 20 C -0.097 4.097 21 H 0.115 0.885 22 C 0.489 3.511 23 O -0.517 6.517 24 O -0.511 6.511 25 C 0.125 3.875 26 C -0.099 4.099 27 H 0.284 0.716 28 H 0.095 0.905 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.408 0.592 38 H 0.066 0.934 39 H 0.104 0.896 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.148 -7.608 1.840 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.099 0.901 9 C 0.098 3.902 10 C -0.233 4.233 11 C -0.115 4.115 12 C -0.248 4.248 13 C -0.126 4.126 14 C 0.365 3.635 15 O -0.422 6.422 16 N -0.348 5.348 17 C -0.035 4.035 18 C -0.175 4.175 19 C -0.140 4.140 20 C -0.117 4.117 21 H 0.133 0.867 22 C 0.331 3.669 23 O -0.405 6.405 24 O -0.322 6.322 25 C 0.002 3.998 26 C -0.119 4.119 27 H 0.095 0.905 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.142 0.858 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.267 0.733 38 H 0.085 0.915 39 H 0.122 0.878 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.264 -7.153 2.002 11.875 hybrid contribution -0.411 0.563 0.266 0.746 sum -9.676 -6.591 2.267 11.925 Atomic orbital electron populations 1.69770 1.07662 1.29697 1.34079 1.25961 0.94782 1.01621 0.92133 0.86264 0.80658 0.80372 0.79238 1.19409 1.19933 1.18330 1.19616 0.97915 0.90971 1.39975 0.90066 1.17580 0.91188 0.92435 0.89042 1.21094 1.02971 0.92742 1.06462 1.20453 0.95622 0.96716 0.98696 1.20580 1.00971 0.95129 1.08077 1.19386 0.95624 0.95480 1.02060 1.18987 0.82907 0.78833 0.82817 1.90689 1.79914 1.36202 1.35427 1.47921 1.21249 1.35108 1.30526 1.22371 0.99952 0.92123 0.89040 1.21921 0.94136 1.03346 0.98053 1.21449 0.99353 0.97225 0.95960 1.21511 0.90941 1.03619 0.95629 0.86709 1.23407 0.86207 0.78473 0.78788 1.90704 1.47858 1.31771 1.70159 1.84607 1.50259 1.54712 1.42660 1.21312 0.82767 1.03676 0.92083 1.21621 0.96603 0.96257 0.97443 0.90503 0.88646 0.88827 0.88017 0.85799 0.91881 0.90002 0.90949 0.90902 0.90889 0.73313 0.91542 0.87773 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.09 10.80 55.55 0.60 -19.49 16 2 C 0.07 1.81 5.17 -17.34 -0.09 1.72 16 3 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 4 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 7 C -0.46 -11.68 9.06 -37.73 -0.34 -12.02 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 9 C 0.10 2.57 5.59 -106.87 -0.60 1.97 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.25 16 11 C -0.10 -1.96 10.01 -39.72 -0.40 -2.36 16 12 C -0.23 -4.57 7.37 -38.92 -0.29 -4.86 16 13 C -0.12 -2.79 5.34 -105.04 -0.56 -3.35 16 14 C 0.57 12.25 7.40 -12.31 -0.09 12.16 16 15 O -0.54 -13.28 16.19 5.33 0.09 -13.19 16 16 N -0.61 -10.17 2.98 -174.12 -0.52 -10.68 16 17 C 0.09 1.20 4.71 -3.93 -0.02 1.18 16 18 C -0.14 -1.57 6.06 -26.84 -0.16 -1.73 16 19 C -0.10 -1.14 4.46 -26.69 -0.12 -1.25 16 20 C -0.10 -1.18 2.78 -91.65 -0.25 -1.44 16 21 H 0.12 1.44 8.14 -51.93 -0.42 1.02 16 22 C 0.49 5.78 7.63 36.01 0.27 6.06 16 23 O -0.52 -7.16 16.74 -18.75 -0.31 -7.47 16 24 O -0.51 -5.05 13.35 -39.25 -0.52 -5.58 16 25 C 0.13 1.76 5.66 -3.71 -0.02 1.74 16 26 C -0.10 -2.56 8.26 -38.44 -0.32 -2.88 16 27 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 28 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 29 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 30 H 0.10 1.74 5.82 -52.48 -0.31 1.43 16 31 H 0.12 1.94 4.34 -51.93 -0.23 1.71 16 32 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.80 8.13 -51.93 -0.42 0.37 16 36 H 0.07 0.78 8.07 -51.93 -0.42 0.36 16 37 H 0.41 2.11 9.10 45.56 0.41 2.53 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 1.64 7.00 -51.93 -0.36 1.28 16 40 H 0.13 3.72 5.92 -52.48 -0.31 3.41 16 LS Contribution 331.55 15.07 5.00 5.00 Total: -1.00 -30.58 331.55 -8.20 -38.78 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -4.13 Total: 9.62 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -3.36 Total: -10.30 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.08 Total: -30.18 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.75 Total: -26.24 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.58 -8.20 -38.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058242599.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.772 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds