Wall clock time and date at job start Tue Mar 31 2020 04:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30667 * 1 3 3 Si 1.86806 * 120.00116 * 2 1 4 4 H 1.48502 * 109.46731 * 89.99937 * 3 2 1 5 5 H 1.48498 * 109.47039 * 209.99850 * 3 2 1 6 6 H 1.48495 * 109.46915 * 330.00268 * 3 2 1 7 7 C 1.40053 * 119.99974 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99678 * 180.02562 * 7 2 1 9 9 C 1.46368 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.21696 * 119.99738 * 354.69947 * 9 7 2 11 11 N 1.34777 * 120.00389 * 174.70009 * 9 7 2 12 12 C 1.46964 * 120.59037 * 4.99339 * 11 9 7 13 13 C 1.53810 * 108.39906 * 124.75939 * 12 11 9 14 14 N 1.46968 * 108.57738 * 49.63688 * 13 12 11 15 15 C 1.34779 * 120.59219 * 124.67235 * 14 13 12 16 16 O 1.21778 * 119.99916 * 184.92325 * 15 14 13 17 17 C 1.41517 * 120.00087 * 4.91471 * 15 14 13 18 18 C 1.35614 * 119.99689 * 146.17991 * 17 15 14 19 19 C 1.41678 * 120.00097 * 352.60539 * 18 17 15 20 20 C 1.38279 * 126.25621 * 146.54021 * 19 18 17 21 21 C 1.39782 * 107.08046 * 179.97438 * 20 19 18 22 22 C 1.35510 * 107.90583 * 0.02562 * 21 20 19 23 23 N 1.35753 * 108.90964 * 359.77133 * 22 21 20 24 24 H 0.96999 * 125.69260 * 180.23396 * 23 22 21 25 25 C 1.46956 * 118.81116 * 304.64620 * 14 13 12 26 26 C 1.46955 * 120.59628 * 185.27348 * 11 9 7 27 27 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.60827 * 244.54488 * 12 11 9 29 29 H 1.09003 * 109.61017 * 5.05351 * 12 11 9 30 30 H 1.09000 * 109.73903 * 289.84586 * 13 12 11 31 31 H 1.08997 * 109.53225 * 169.30259 * 13 12 11 32 32 H 1.08002 * 119.99914 * 326.18494 * 17 15 14 33 33 H 1.08005 * 120.00044 * 172.61393 * 18 17 15 34 34 H 1.08009 * 126.46048 * 359.97438 * 20 19 18 35 35 H 1.07998 * 126.05231 * 179.97438 * 21 20 19 36 36 H 1.07999 * 125.54401 * 179.97438 * 22 21 20 37 37 H 1.09004 * 109.61059 * 295.48046 * 25 14 13 38 38 H 1.09003 * 109.61256 * 174.97554 * 25 14 13 39 39 H 1.09006 * 109.61417 * 354.94571 * 26 11 9 40 40 H 1.09000 * 109.61225 * 115.45924 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 1.4001 5 1 3.5383 1.4401 -0.7000 6 1 1.4382 2.6527 -0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2128 -0.0001 9 6 1.2751 -2.4805 -0.0017 10 8 0.0620 -2.4828 0.0952 11 7 1.9447 -3.6452 -0.1100 12 6 3.4141 -3.6651 -0.1178 13 6 3.8928 -4.6086 0.9986 14 7 3.1665 -5.8808 0.8800 15 6 3.8361 -7.0454 0.7717 16 8 3.2268 -8.0829 0.5841 17 6 5.2474 -7.0625 0.8758 18 6 5.8728 -8.1256 1.4396 19 6 5.1127 -9.1452 2.0642 20 6 5.4246 -10.4918 2.1005 21 6 4.4076 -11.1296 2.8166 22 6 3.5117 -10.1868 3.1973 23 7 3.9311 -8.9756 2.7503 24 1 3.4737 -8.1316 2.8895 25 6 1.6971 -5.8602 0.8822 26 6 1.2184 -4.9172 -0.2286 27 1 -0.4850 0.8401 -0.0004 28 1 3.7699 -4.0259 -1.0829 29 1 3.7946 -2.6597 0.0626 30 1 3.6897 -4.1607 1.9714 31 1 4.9627 -4.7868 0.8913 32 1 5.8263 -6.2290 0.5064 33 1 6.9502 -8.1950 1.4125 34 1 6.2906 -10.9623 1.6586 35 1 4.3461 -12.1869 3.0284 36 1 2.6123 -10.3690 3.7667 37 1 1.3377 -5.5015 1.8468 38 1 1.3168 -6.8651 0.6982 39 1 0.1484 -4.7390 -0.1213 40 1 1.4215 -5.3652 -1.2013 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492827310.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:16:14 Heat of formation + Delta-G solvation = 22.224924 kcal Electronic energy + Delta-G solvation = -24579.039110 eV Core-core repulsion = 20975.080410 eV Total energy + Delta-G solvation = -3603.958700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 303.137 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.31296 -39.91139 -38.03217 -35.91131 -33.97952 -33.08878 -32.54000 -31.12776 -30.95664 -28.52244 -27.36354 -26.11894 -24.05525 -23.08421 -21.81477 -20.58378 -20.39369 -19.65427 -18.79102 -17.77183 -16.71874 -16.21660 -15.81158 -15.41677 -15.28942 -14.61806 -14.31198 -14.19175 -14.10708 -13.99875 -13.88663 -13.48891 -12.89170 -12.83219 -12.67165 -12.28701 -12.14771 -11.90367 -11.71345 -11.44838 -11.22639 -11.07540 -11.01956 -10.81048 -10.32310 -10.16770 -10.12481 -9.67763 -8.99006 -8.91210 -8.65666 -7.71765 -7.69350 -7.31471 -6.30704 -4.76908 0.75981 2.45517 2.92992 3.06205 3.11600 3.14531 3.16545 3.21964 3.44201 3.98952 4.39087 4.45363 4.68697 4.82362 5.10793 5.17202 5.25548 5.32985 5.35916 5.44204 5.48844 5.51356 5.57047 5.79056 5.87956 5.89254 5.94755 6.01983 6.21609 6.23907 6.26678 6.30925 6.45932 6.67788 6.91656 7.07302 7.33774 7.42898 7.49449 7.52476 7.98376 8.19636 8.23051 8.90748 9.28414 10.45176 10.63636 Molecular weight = 303.14amu Principal moments of inertia in cm(-1) A = 0.033309 B = 0.003134 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.407736 B = 8933.492532 C = 9402.160710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.271 1.271 5 H -0.264 1.264 6 H -0.279 1.279 7 C -0.545 4.545 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.575 6.575 11 N -0.643 5.643 12 C 0.108 3.892 13 C 0.089 3.911 14 N -0.603 5.603 15 C 0.536 3.464 16 O -0.542 6.542 17 C -0.233 4.233 18 C 0.006 3.994 19 C 0.020 3.980 20 C -0.161 4.161 21 C -0.211 4.211 22 C 0.011 3.989 23 N -0.522 5.522 24 H 0.412 0.588 25 C 0.097 3.903 26 C 0.108 3.892 27 H 0.270 0.730 28 H 0.048 0.952 29 H 0.106 0.894 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.140 0.860 33 H 0.144 0.856 34 H 0.137 0.863 35 H 0.134 0.866 36 H 0.161 0.839 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.836 -13.553 5.161 19.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.188 1.188 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.365 3.635 10 O -0.458 6.458 11 N -0.382 5.382 12 C -0.017 4.017 13 C -0.035 4.035 14 N -0.336 5.336 15 C 0.328 3.672 16 O -0.423 6.423 17 C -0.255 4.255 18 C -0.014 4.014 19 C -0.091 4.091 20 C -0.186 4.186 21 C -0.235 4.235 22 C -0.125 4.125 23 N -0.114 5.114 24 H 0.250 0.750 25 C -0.027 4.027 26 C -0.017 4.017 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.105 0.895 32 H 0.157 0.843 33 H 0.162 0.838 34 H 0.155 0.845 35 H 0.152 0.848 36 H 0.178 0.822 37 H 0.086 0.914 38 H 0.109 0.891 39 H 0.114 0.886 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.539 -13.799 5.131 18.705 hybrid contribution 0.314 1.308 -0.093 1.348 sum 11.853 -12.491 5.038 17.942 Atomic orbital electron populations 1.70003 1.07120 1.27493 1.34840 1.25737 0.94632 1.00377 0.92530 0.86372 0.80167 0.81368 0.78893 1.19674 1.18826 1.20403 1.20938 0.93495 0.89162 1.54542 0.90881 1.18301 0.86957 0.82125 0.76142 1.90603 1.14389 1.85900 1.54878 1.48187 1.04396 1.05922 1.79650 1.21900 0.83369 1.00435 0.96011 1.22442 0.96130 0.84017 1.00920 1.48215 1.07400 1.06556 1.71398 1.17327 0.88550 0.83488 0.77871 1.90901 1.70112 1.31629 1.49610 1.22161 0.94851 1.01220 1.07239 1.20705 0.99218 0.89491 0.91993 1.18109 0.90124 0.95344 1.05557 1.21264 1.01316 0.91625 1.04352 1.20721 0.97356 0.98847 1.06604 1.21904 1.01157 0.84381 1.05082 1.42163 1.18659 1.09293 1.41305 0.75025 1.22084 0.79058 1.01300 1.00213 1.21483 0.99180 0.85096 0.95919 0.91949 0.93403 0.87577 0.90800 0.89505 0.84286 0.83820 0.84526 0.84797 0.82166 0.91394 0.89060 0.88628 0.93508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.24 11.84 55.55 0.66 -21.58 16 2 C 0.09 2.33 5.50 -17.37 -0.10 2.24 16 3 Si 0.91 19.15 29.56 -169.99 -5.02 14.12 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -14.44 8.87 -35.63 -0.32 -14.76 16 8 H 0.07 1.72 5.66 -52.49 -0.30 1.43 16 9 C 0.56 15.18 7.61 -12.99 -0.10 15.09 16 10 O -0.58 -18.01 14.45 5.19 0.08 -17.94 16 11 N -0.64 -13.85 2.94 -173.88 -0.51 -14.36 16 12 C 0.11 1.82 6.51 -3.37 -0.02 1.80 16 13 C 0.09 1.19 6.48 -3.37 -0.02 1.16 16 14 N -0.60 -8.78 2.95 -175.66 -0.52 -9.30 16 15 C 0.54 7.69 5.67 -15.01 -0.09 7.60 16 16 O -0.54 -9.38 13.26 5.12 0.07 -9.32 16 17 C -0.23 -2.59 8.81 -39.27 -0.35 -2.94 16 18 C 0.01 0.06 9.93 -39.21 -0.39 -0.32 16 19 C 0.02 0.25 5.45 -83.91 -0.46 -0.21 16 20 C -0.16 -1.87 10.86 -38.99 -0.42 -2.30 16 21 C -0.21 -2.39 10.81 -39.98 -0.43 -2.82 16 22 C 0.01 0.12 11.90 -16.79 -0.20 -0.08 16 23 N -0.52 -6.45 4.37 -10.56 -0.05 -6.50 16 24 H 0.41 5.04 7.33 -40.82 -0.30 4.74 16 25 C 0.10 1.57 6.60 -3.60 -0.02 1.54 16 26 C 0.11 2.09 6.60 -3.60 -0.02 2.07 16 27 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.11 1.81 5.34 -51.93 -0.28 1.53 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.09 0.86 5.56 -51.93 -0.29 0.57 16 32 H 0.14 1.20 6.42 -52.49 -0.34 0.86 16 33 H 0.14 0.97 8.06 -52.48 -0.42 0.54 16 34 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 37 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.09 1.45 6.99 -51.93 -0.36 1.09 16 39 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 329.67 15.07 4.97 4.97 Total: -1.00 -35.47 329.67 -8.01 -43.48 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -4.74 Total: 8.36 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -2.94 Total: 8.07 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.42 Total: -51.74 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: 0.14 Total: -27.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.47 -8.01 -43.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492827310.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.700 kcal (2) G-P(sol) polarization free energy of solvation -35.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds