Wall clock time and date at job start Tue Mar 31 2020 03:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47326 * 2 1 4 4 S 1.81404 * 109.46993 * 120.00292 * 2 1 3 5 5 O 1.42097 * 108.57684 * 305.50913 * 4 2 1 6 6 O 1.42109 * 108.57608 * 174.48386 * 4 2 1 7 7 C 1.81399 * 101.92211 * 59.99983 * 4 2 1 8 8 C 1.50700 * 109.47205 * 180.02562 * 7 4 2 9 9 O 1.21288 * 119.99508 * 359.97438 * 8 7 4 10 10 N 1.34775 * 120.00217 * 180.02562 * 8 7 4 11 11 C 1.46928 * 120.62932 * 359.97291 * 10 8 7 12 12 C 1.53187 * 108.77625 * 126.41524 * 11 10 8 13 13 C 1.53046 * 109.31363 * 54.63376 * 12 11 10 14 14 C 1.53046 * 109.53579 * 298.63645 * 13 12 11 15 15 H 1.08995 * 109.49499 * 301.40973 * 14 13 12 16 16 C 1.50700 * 109.49623 * 181.31259 * 14 13 12 17 17 H 1.07996 * 120.00534 * 240.00313 * 16 14 13 18 18 C 1.37878 * 119.99817 * 59.99951 * 16 14 13 19 19 N 1.31514 * 120.00036 * 0.02562 * 18 16 14 20 20 Si 1.86798 * 120.00058 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47137 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47414 * 120.00165 * 20 18 16 23 23 H 1.48506 * 109.47166 * 239.99986 * 20 18 16 24 24 C 1.46921 * 120.63131 * 179.97438 * 10 8 7 25 25 H 1.08998 * 109.46908 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46594 * 299.99851 * 1 2 3 27 27 H 1.08995 * 109.46882 * 59.99502 * 1 2 3 28 28 H 1.09008 * 109.46873 * 240.00103 * 2 1 3 29 29 H 1.08994 * 109.47016 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47107 * 300.00123 * 3 2 1 31 31 H 1.08994 * 109.46924 * 60.00098 * 3 2 1 32 32 H 1.09001 * 109.47504 * 59.99850 * 7 4 2 33 33 H 1.09003 * 109.47015 * 299.99751 * 7 4 2 34 34 H 1.09000 * 109.58351 * 246.20638 * 11 10 8 35 35 H 1.09002 * 109.58642 * 6.48295 * 11 10 8 36 36 H 1.09001 * 109.49833 * 294.68424 * 12 11 10 37 37 H 1.08996 * 109.49835 * 174.58430 * 12 11 10 38 38 H 1.08993 * 109.46296 * 178.61734 * 13 12 11 39 39 H 1.09000 * 109.45696 * 58.65290 * 13 12 11 40 40 H 0.97001 * 119.99878 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.58905 * 113.79723 * 24 10 8 42 42 H 1.09008 * 109.58585 * 353.36923 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 2.1347 -0.8552 1.4811 5 8 1.5480 -0.2495 2.6248 6 8 3.5497 -0.9573 1.3990 7 6 1.4229 -2.5109 1.2746 8 6 1.8270 -3.3800 2.4376 9 8 2.5267 -2.9272 3.3187 10 7 1.4117 -4.6608 2.4980 11 6 0.5642 -5.2237 1.4380 12 6 1.2187 -6.5047 0.9115 13 6 1.4790 -7.4575 2.0806 14 6 2.4382 -6.7981 3.0743 15 1 3.3710 -6.5486 2.5686 16 6 2.7193 -7.7494 4.2088 17 1 2.4692 -7.4708 5.2218 18 6 3.2957 -8.9756 3.9536 19 7 3.6008 -9.3148 2.7201 20 14 3.6435 -10.1551 5.3597 21 1 3.2108 -9.5401 6.6402 22 1 2.8975 -11.4202 5.1406 23 1 5.0994 -10.4425 5.4162 24 6 1.7979 -5.5206 3.6250 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8934 -0.5139 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.7894 -2.9509 0.3472 33 1 0.3360 -2.4371 1.2372 34 1 -0.4208 -5.4563 1.8427 35 1 0.4650 -4.5017 0.6274 36 1 2.1630 -6.2579 0.4262 37 1 0.5541 -6.9840 0.1928 38 1 1.9223 -8.3799 1.7056 39 1 0.5375 -7.6844 2.5807 40 1 4.0066 -10.1774 2.5405 41 1 0.9137 -5.7775 4.2084 42 1 2.5148 -4.9955 4.2563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597911033.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:41 Heat of formation + Delta-G solvation = -115.852359 kcal Electronic energy + Delta-G solvation = -23783.496731 eV Core-core repulsion = 20276.701751 eV Total energy + Delta-G solvation = -3506.794980 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 303.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.82806 -37.02044 -37.01106 -36.00131 -35.39046 -33.65977 -31.61433 -31.05292 -29.64214 -27.66018 -25.15921 -24.54311 -22.93249 -21.81166 -20.30642 -18.79088 -18.49561 -17.66363 -16.67773 -16.44169 -16.33588 -15.95898 -15.31515 -14.84407 -14.76608 -14.46857 -13.74561 -13.65578 -13.50614 -13.41074 -13.10997 -12.77545 -12.75233 -12.63327 -12.13795 -12.10653 -12.04043 -11.96905 -11.82830 -11.79736 -11.16887 -11.01431 -10.91285 -10.73039 -10.46099 -10.34303 -10.02395 -9.99608 -9.73186 -9.48375 -8.89429 -8.44454 -8.07597 -6.06053 -4.13077 -0.22575 2.62935 2.67965 3.13461 3.27309 3.35888 3.40584 3.70020 3.80740 4.17587 4.25102 4.38331 4.41254 4.66764 4.78245 4.92229 5.05848 5.13876 5.19179 5.21966 5.25746 5.34630 5.49143 5.61006 5.62467 5.64234 5.95810 6.22857 6.27237 6.37140 6.56694 6.66750 6.81123 7.06383 7.22645 7.64003 7.72253 7.88310 8.01145 8.22948 8.36853 8.90454 9.52237 10.99706 Molecular weight = 303.13amu Principal moments of inertia in cm(-1) A = 0.031665 B = 0.003468 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.047298 B = 8072.428265 C = 8450.290078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.586 4.586 3 C -0.142 4.142 4 S 2.451 3.549 5 O -0.919 6.919 6 O -0.919 6.919 7 C -0.658 4.658 8 C 0.535 3.465 9 O -0.540 6.540 10 N -0.589 5.589 11 C 0.104 3.896 12 C -0.137 4.137 13 C -0.114 4.114 14 C 0.038 3.962 15 H 0.031 0.969 16 C -0.514 4.514 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.114 3.886 25 H 0.069 0.931 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.137 0.863 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.157 0.843 33 H 0.156 0.844 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.098 0.902 39 H 0.037 0.963 40 H 0.260 0.740 41 H 0.061 0.939 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.527 15.548 -11.070 21.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.694 4.694 3 C -0.200 4.200 4 S 2.628 3.372 5 O -0.916 6.916 6 O -0.916 6.916 7 C -0.786 4.786 8 C 0.320 3.680 9 O -0.419 6.419 10 N -0.320 5.320 11 C -0.019 4.019 12 C -0.175 4.175 13 C -0.152 4.152 14 C 0.019 3.981 15 H 0.050 0.950 16 C -0.553 4.553 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.722 3.278 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.007 4.007 25 H 0.088 0.912 26 H 0.098 0.902 27 H 0.098 0.902 28 H 0.155 0.845 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.175 0.825 33 H 0.174 0.826 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.116 0.884 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.570 15.914 -10.021 20.667 hybrid contribution -0.427 -1.243 -0.329 1.355 sum -8.996 14.671 -10.350 20.082 Atomic orbital electron populations 1.21746 0.90051 1.03624 1.05042 1.30216 1.07000 1.10252 1.21963 1.21619 1.02239 0.91559 1.04590 1.07635 0.76077 0.76613 0.76913 1.93554 1.79293 1.73868 1.44877 1.93583 1.26446 1.85254 1.86358 1.30873 1.15428 1.23883 1.08366 1.19000 0.80748 0.82863 0.85358 1.90829 1.38342 1.72838 1.39874 1.48189 1.49414 1.09837 1.24603 1.21860 0.93911 0.96492 0.89606 1.22026 1.00020 0.95552 0.99869 1.21654 0.98902 1.00121 0.94493 1.19002 0.94321 0.89795 0.94973 0.95041 1.21095 1.40462 1.00504 0.93207 0.92289 1.24940 0.95200 0.98050 0.95651 1.69874 1.42499 1.21889 1.18507 0.86495 0.77992 0.80737 0.82546 1.19675 1.21052 1.20980 1.22158 0.99816 0.91982 0.86732 0.91200 0.90218 0.90220 0.84504 0.90706 0.90056 0.90704 0.82479 0.82591 0.91391 0.91016 0.92208 0.92198 0.88422 0.94423 0.92984 0.92097 0.89789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 8.94 37.16 0.33 -0.47 16 2 C -0.59 -4.23 3.31 -26.73 -0.09 -4.32 16 3 C -0.14 -1.01 9.20 37.16 0.34 -0.67 16 4 S 2.45 31.38 3.49 -107.50 -0.37 31.01 16 5 O -0.92 -14.78 17.76 -59.54 -1.06 -15.84 16 6 O -0.92 -15.65 17.95 -59.52 -1.07 -16.71 16 7 C -0.66 -7.50 4.18 36.01 0.15 -7.35 16 8 C 0.54 9.67 7.72 -10.99 -0.08 9.59 16 9 O -0.54 -12.09 15.04 2.54 0.04 -12.05 16 10 N -0.59 -10.68 2.97 -172.79 -0.51 -11.20 16 11 C 0.10 1.48 6.34 -3.71 -0.02 1.46 16 12 C -0.14 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C -0.11 -2.46 4.96 -26.68 -0.13 -2.59 16 14 C 0.04 0.93 2.25 -91.67 -0.21 0.72 16 15 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.51 -13.81 8.56 -34.44 -0.29 -14.10 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 19 N -0.89 -24.67 11.31 55.43 0.63 -24.04 16 20 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.11 2.44 5.65 -3.73 -0.02 2.42 16 25 H 0.07 0.25 6.56 -51.93 -0.34 -0.09 16 26 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 27 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.14 0.64 8.14 -51.92 -0.42 0.22 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.16 1.26 7.69 -51.92 -0.40 0.86 16 33 H 0.16 1.13 6.67 -51.92 -0.35 0.78 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.72 5.93 -51.93 -0.31 0.42 16 36 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.10 2.41 6.04 -51.93 -0.31 2.10 16 39 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.08 1.95 7.01 -51.92 -0.36 1.59 16 LS Contribution 345.45 15.07 5.21 5.21 Total: -1.00 -36.18 345.45 -9.13 -45.31 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -6.68 Total: -1.52 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -0.28 Total: -16.14 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 0.11 Total: -35.24 kcal Atomic # 8 Polarization: -42.52 SS G_CDS: -2.09 Total: -44.61 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 31.38 SS G_CDS: -0.37 Total: 31.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.18 -9.13 -45.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597911033.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.546 kcal (2) G-P(sol) polarization free energy of solvation -36.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds